RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 SCYL3Q8IZE3 742 aa13.94□□□□□ -0.18
VPS53-207ENST00000570510 SYMPKQ92797 1274 aaKnown RBP13.94□□□□□ -0.18
VPS53-207ENST00000570510 PUS3Q9BZE2 481 aaKnown RBP13.94□□□□□ -0.18
VPS53-207ENST00000570510 F6X3S4 739 aa13.93□□□□□ -0.18
VPS53-207ENST00000570510 IFIT1P09914 478 aaKnown RBP13.93□□□□□ -0.18
VPS53-207ENST00000570510 WDR66Q8TBY9 1149 aa13.93□□□□□ -0.18
VPS53-207ENST00000570510 GUCD1Q96NT3 240 aa13.93□□□□□ -0.18
VPS53-207ENST00000570510 USP40Q9NVE5 1235 aa13.93□□□□□ -0.18
VPS53-207ENST00000570510 POTEB2H3BUK9 544 aa13.92□□□□□ -0.18
VPS53-207ENST00000570510 FAM110CQ1W6H9 321 aa13.92□□□□□ -0.18
VPS53-207ENST00000570510 BEND3Q5T5X7 828 aa13.92□□□□□ -0.18
VPS53-207ENST00000570510 CDC42EP5Q6NZY7 148 aa13.92□□□□□ -0.18
VPS53-207ENST00000570510 PRKAG2Q9UGJ0 569 aa13.92□□□□□ -0.18
VPS53-207ENST00000570510 AGTPBP1Q9UPW5 1226 aa13.92□□□□□ -0.18
VPS53-207ENST00000570510 AFG3L2Q9Y4W6 797 aa13.92□□□□□ -0.18
VPS53-207ENST00000570510 MGAMO43451 1857 aa13.92□□□□□ -0.18
VPS53-207ENST00000570510 AK9Q5TCS8 1911 aa13.92□□□□□ -0.18
VPS53-207ENST00000570510 GCLCP48506 637 aaPredicted RBP13.91□□□□□ -0.18
VPS53-207ENST00000570510 NFIAQ12857 509 aa13.91□□□□□ -0.18
VPS53-207ENST00000570510 DDX10Q13206 875 aaKnown RBP13.91□□□□□ -0.18
VPS53-207ENST00000570510 PABPC4Q13310 644 aaKnown RBP eCLIP13.91□□□□□ -0.18
VPS53-207ENST00000570510 SLC4A10Q6U841 1118 aa13.91□□□□□ -0.18
VPS53-207ENST00000570510 MAFAQ8NHW3 353 aaPredicted RBP13.91□□□□□ -0.18
VPS53-207ENST00000570510 OGDHLQ9ULD0 1010 aa13.91□□□□□ -0.18
VPS53-207ENST00000570510 DAGLAQ9Y4D2 1042 aa13.91□□□□□ -0.18
VPS53-207ENST00000570510 PDE8BO95263 885 aa13.9□□□□□ -0.18
VPS53-207ENST00000570510 TRIM32Q13049 653 aa13.9□□□□□ -0.18
VPS53-207ENST00000570510 DIXDC1Q155Q3 683 aa13.9□□□□□ -0.18
VPS53-207ENST00000570510 CCAR1Q8IX12 1150 aaKnown RBP13.9□□□□□ -0.18
VPS53-207ENST00000570510 A0A1B0GUL6 1792 aa13.89□□□□□ -0.19
VPS53-207ENST00000570510 CTNND1O60716 968 aaKnown RBP13.89□□□□□ -0.19
VPS53-207ENST00000570510 LDHBP07195 334 aaKnown RBP13.89□□□□□ -0.19
VPS53-207ENST00000570510 PRKAR2AP13861 404 aaKnown RBP13.89□□□□□ -0.19
VPS53-207ENST00000570510 CYP2B6P20813 491 aa13.89□□□□□ -0.19
VPS53-207ENST00000570510 COL9A1P20849 921 aa13.89□□□□□ -0.19
VPS53-207ENST00000570510 CDX2Q99626 313 aaPredicted RBP13.89□□□□□ -0.19
VPS53-207ENST00000570510 SPINK5Q9NQ38 1064 aaPredicted RBP13.89□□□□□ -0.19
VPS53-207ENST00000570510 VCANP13611 3396 aa13.88□□□□□ -0.19
VPS53-207ENST00000570510 ZNF316A6NFI3 1004 aaPredicted RBP13.88□□□□□ -0.19
VPS53-207ENST00000570510 PHF20L1A8MW92 1017 aa13.88□□□□□ -0.19
VPS53-207ENST00000570510 PDE3AQ14432 1141 aa13.88□□□□□ -0.19
VPS53-207ENST00000570510 PUM3Q15397 648 aaKnown RBP13.88□□□□□ -0.19
VPS53-207ENST00000570510 LRRC24Q50LG9 513 aa13.88□□□□□ -0.19
VPS53-207ENST00000570510 TREML2Q5T2D2 321 aa13.88□□□□□ -0.19
VPS53-207ENST00000570510 SRCIN1Q9C0H9 1055 aa13.88□□□□□ -0.19
VPS53-207ENST00000570510 FAM198AQ9UFP1 575 aa13.88□□□□□ -0.19
VPS53-207ENST00000570510 ALPK3Q96L96 1907 aa13.88□□□□□ -0.19
VPS53-207ENST00000570510 PFASO15067 1338 aa13.88□□□□□ -0.19
VPS53-207ENST00000570510 ALDH1L1O75891 902 aa13.87□□□□□ -0.19
VPS53-207ENST00000570510 SLC5A1P13866 664 aa13.87□□□□□ -0.19
VPS53-207ENST00000570510 RGS3P49796 1198 aa13.87□□□□□ -0.19
VPS53-207ENST00000570510 LRRC26Q2I0M4 334 aa13.87□□□□□ -0.19
VPS53-207ENST00000570510 ZFPM1Q8IX07 1006 aa13.87□□□□□ -0.19
VPS53-207ENST00000570510 TRMT44Q8IYL2 757 aaKnown RBP13.87□□□□□ -0.19
VPS53-207ENST00000570510 PROCA1Q8NCQ7 364 aaPredicted RBP13.87□□□□□ -0.19
VPS53-207ENST00000570510 NUDT12Q9BQG2 462 aa13.87□□□□□ -0.19
VPS53-207ENST00000570510 CWC22Q9HCG8 908 aaKnown RBP13.87□□□□□ -0.19
VPS53-207ENST00000570510 GNL3LQ9NVN8 582 aaKnown RBP13.87□□□□□ -0.19
VPS53-207ENST00000570510 GJD2Q9UKL4 321 aa13.87□□□□□ -0.19
VPS53-207ENST00000570510 ENTPD3O75355 529 aa13.86□□□□□ -0.19
VPS53-207ENST00000570510 FOSL2P15408 326 aa13.86□□□□□ -0.19
VPS53-207ENST00000570510 ZKSCAN1P17029 563 aaPredicted RBP13.86□□□□□ -0.19
VPS53-207ENST00000570510 TRIB2Q92519 343 aa13.86□□□□□ -0.19
VPS53-207ENST00000570510 SUCLG2Q96I99 432 aa13.86□□□□□ -0.19
VPS53-207ENST00000570510 SENP6Q9GZR1 1112 aaPredicted RBP13.86□□□□□ -0.19
VPS53-207ENST00000570510 DDX60LQ5H9U9 1706 aaKnown RBP13.85□□□□□ -0.19
VPS53-207ENST00000570510 PRDX5P30044 214 aa13.85□□□□□ -0.19
VPS53-207ENST00000570510 IRX3P78415 501 aaPredicted RBP13.85□□□□□ -0.19
VPS53-207ENST00000570510 SPP2Q13103 211 aa13.85□□□□□ -0.19
VPS53-207ENST00000570510 PICALMQ13492 652 aa13.85□□□□□ -0.19
VPS53-207ENST00000570510 SOCS4Q8WXH5 440 aa13.85□□□□□ -0.19
VPS53-207ENST00000570510 SEMA6BQ9H3T3 888 aa13.85□□□□□ -0.19
VPS53-207ENST00000570510 PRKRIP1Q9H875 184 aaPredicted RBP13.85□□□□□ -0.19
VPS53-207ENST00000570510 KIF16BQ96L93 1317 aa13.85□□□□□ -0.19
VPS53-207ENST00000570510 HMGCS2P54868 508 aa13.84□□□□□ -0.19
VPS53-207ENST00000570510 CCDC84Q86UT8 332 aaPredicted RBP13.84□□□□□ -0.19
VPS53-207ENST00000570510 WWC1Q8IX03 1113 aa13.84□□□□□ -0.19
VPS53-207ENST00000570510 SLF2Q8IX21 1173 aa13.84□□□□□ -0.19
VPS53-207ENST00000570510 ZNF280CQ8ND82 737 aa13.84□□□□□ -0.19
VPS53-207ENST00000570510 MYLIPQ8WY64 445 aa13.84□□□□□ -0.19
VPS53-207ENST00000570510 ASCC2Q9H1I8 757 aaPredicted RBP13.84□□□□□ -0.19
VPS53-207ENST00000570510 BICC1Q9H694 974 aaKnown RBP13.84□□□□□ -0.19
VPS53-207ENST00000570510 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.84□□□□□ -0.19
VPS53-207ENST00000570510 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.84□□□□□ -0.19
VPS53-207ENST00000570510 VAMP4O75379 141 aa13.83□□□□□ -0.2
VPS53-207ENST00000570510 COL6A1P12109 1028 aa13.83□□□□□ -0.2
VPS53-207ENST00000570510 XRCC5P13010 732 aaKnown RBP13.83□□□□□ -0.2
VPS53-207ENST00000570510 ATN1P54259 1190 aaPredicted RBP13.83□□□□□ -0.2
VPS53-207ENST00000570510 CACNB2Q08289 660 aaPredicted RBP13.83□□□□□ -0.2
VPS53-207ENST00000570510 MAP3K21Q5TCX8 1036 aa13.83□□□□□ -0.2
VPS53-207ENST00000570510 DZIP1Q86YF9 867 aaKnown RBP13.83□□□□□ -0.2
VPS53-207ENST00000570510 VGLL2Q8N8G2 317 aa13.83□□□□□ -0.2
VPS53-207ENST00000570510 GPRC5AQ8NFJ5 357 aa13.83□□□□□ -0.2
VPS53-207ENST00000570510 LPIN2Q92539 896 aa13.83□□□□□ -0.2
VPS53-207ENST00000570510 IDI2Q9BXS1 227 aa13.83□□□□□ -0.2
VPS53-207ENST00000570510 TBC1D2Q9BYX2 928 aa13.83□□□□□ -0.2
VPS53-207ENST00000570510 DDTLA6NHG4 134 aaPredicted RBP13.82□□□□□ -0.2
VPS53-207ENST00000570510 TNFRSF10AO00220 468 aa13.82□□□□□ -0.2
VPS53-207ENST00000570510 NBPF7P0C2Y1 421 aaPredicted RBP13.82□□□□□ -0.2
VPS53-207ENST00000570510 MAPK4P31152 587 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms