RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 DDX4Q9NQI0 724 aaKnown RBP24.83■■□□□ 1.57
CLK3-225ENST00000569063 RAB11FIP3O75154 756 aa24.82■■□□□ 1.56
CLK3-225ENST00000569063 OTUD7BQ6GQQ9 843 aa24.82■■□□□ 1.56
CLK3-225ENST00000569063 NAA16Q6N069 864 aaPredicted RBP24.82■■□□□ 1.56
CLK3-225ENST00000569063 SH3BP5LQ7L8J4 393 aa24.82■■□□□ 1.56
CLK3-225ENST00000569063 CLASRPQ8N2M8 674 aaKnown RBP24.82■■□□□ 1.56
CLK3-225ENST00000569063 OTUD5Q96G74 571 aa24.82■■□□□ 1.56
CLK3-225ENST00000569063 PTPN18Q99952 460 aa24.82■■□□□ 1.56
CLK3-225ENST00000569063 MCOLN1Q9GZU1 580 aa24.82■■□□□ 1.56
CLK3-225ENST00000569063 ATRNL1Q5VV63 1379 aa24.81■■□□□ 1.56
CLK3-225ENST00000569063 GPR25O00155 361 aa24.81■■□□□ 1.56
CLK3-225ENST00000569063 INPP5BP32019 993 aa24.81■■□□□ 1.56
CLK3-225ENST00000569063 GTF2A2P52657 109 aa24.81■■□□□ 1.56
CLK3-225ENST00000569063 MAP3K10Q02779 954 aa24.81■■□□□ 1.56
CLK3-225ENST00000569063 DGKZQ13574 1117 aa24.81■■□□□ 1.56
CLK3-225ENST00000569063 PIH1D3Q9NQM4 214 aaKnown RBP24.81■■□□□ 1.56
CLK3-225ENST00000569063 DDTLA6NHG4 134 aaPredicted RBP24.8■■□□□ 1.56
CLK3-225ENST00000569063 PICALMQ13492 652 aa24.8■■□□□ 1.56
CLK3-225ENST00000569063 ZSCAN29Q8IWY8 852 aaPredicted RBP24.8■■□□□ 1.56
CLK3-225ENST00000569063 ZNF296Q8WUU4 475 aaPredicted RBP24.8■■□□□ 1.56
CLK3-225ENST00000569063 R3HDMLQ9H3Y0 253 aa24.8■■□□□ 1.56
CLK3-225ENST00000569063 AK9Q5TCS8 1911 aa24.79■■□□□ 1.56
CLK3-225ENST00000569063 APBB1O00213 710 aa24.79■■□□□ 1.56
CLK3-225ENST00000569063 PPATQ06203 517 aa24.79■■□□□ 1.56
CLK3-225ENST00000569063 NOL9Q5SY16 702 aaKnown RBP24.79■■□□□ 1.56
CLK3-225ENST00000569063 NOL10Q9BSC4 688 aaKnown RBP24.79■■□□□ 1.56
CLK3-225ENST00000569063 MAST2Q6P0Q8 1798 aa24.79■■□□□ 1.56
CLK3-225ENST00000569063 PHF20L1A8MW92 1017 aa24.78■■□□□ 1.56
CLK3-225ENST00000569063 BAG3O95817 575 aa24.78■■□□□ 1.56
CLK3-225ENST00000569063 PPP4CP60510 307 aa24.78■■□□□ 1.56
CLK3-225ENST00000569063 PPIL2Q13356 520 aa24.78■■□□□ 1.56
CLK3-225ENST00000569063 BRI3BPQ8WY22 251 aa24.78■■□□□ 1.56
CLK3-225ENST00000569063 CCL15-CCL14A0A0B4J2E2 113 aa24.77■■□□□ 1.56
CLK3-225ENST00000569063 IRF6O14896 467 aa24.77■■□□□ 1.56
CLK3-225ENST00000569063 PLCG2P16885 1265 aa24.77■■□□□ 1.56
CLK3-225ENST00000569063 CCL15Q16663 113 aa24.77■■□□□ 1.56
CLK3-225ENST00000569063 CTU1Q7Z7A3 348 aaKnown RBP24.77■■□□□ 1.56
CLK3-225ENST00000569063 ADGRA1Q86SQ6 560 aa24.77■■□□□ 1.56
CLK3-225ENST00000569063 SH3RF3Q8TEJ3 882 aaPredicted RBP24.77■■□□□ 1.56
CLK3-225ENST00000569063 COL2A1P02458 1487 aaPredicted RBP24.77■■□□□ 1.56
CLK3-225ENST00000569063 IFIT2P09913 472 aaKnown RBP24.76■■□□□ 1.55
CLK3-225ENST00000569063 TEX11Q8IYF3 940 aa24.76■■□□□ 1.55
CLK3-225ENST00000569063 OSBPL5Q9H0X9 879 aaPredicted RBP24.76■■□□□ 1.55
CLK3-225ENST00000569063 AATFQ9NY61 560 aaKnown RBP eCLIP24.76■■□□□ 1.55
CLK3-225ENST00000569063 DOCK2Q92608 1830 aa24.76■■□□□ 1.55
CLK3-225ENST00000569063 TBC1D12O60347 775 aa24.75■■□□□ 1.55
CLK3-225ENST00000569063 FKTNO75072 461 aa24.75■■□□□ 1.55
CLK3-225ENST00000569063 CETPP11597 493 aa24.75■■□□□ 1.55
CLK3-225ENST00000569063 SNAPC2Q13487 334 aa24.75■■□□□ 1.55
CLK3-225ENST00000569063 TMED8Q6PL24 325 aaPredicted RBP24.75■■□□□ 1.55
CLK3-225ENST00000569063 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.75■■□□□ 1.55
CLK3-225ENST00000569063 ANTXR1Q9H6X2 564 aa24.75■■□□□ 1.55
CLK3-225ENST00000569063 NDUFB9Q9Y6M9 179 aa24.75■■□□□ 1.55
CLK3-225ENST00000569063 IDH1O75874 414 aaKnown RBP24.74■■□□□ 1.55
CLK3-225ENST00000569063 CRHR2Q13324 411 aa24.74■■□□□ 1.55
CLK3-225ENST00000569063 MYO5AQ9Y4I1 1855 aaKnown RBP24.73■■□□□ 1.55
CLK3-225ENST00000569063 SCYL3Q8IZE3 742 aa24.73■■□□□ 1.55
CLK3-225ENST00000569063 YTHDC1Q96MU7 727 aaKnown RBP24.73■■□□□ 1.55
CLK3-225ENST00000569063 KCNH4Q9UQ05 1017 aa24.73■■□□□ 1.55
CLK3-225ENST00000569063 CYP7A1P22680 504 aa24.72■■□□□ 1.55
CLK3-225ENST00000569063 RRP1P56182 461 aaKnown RBP24.72■■□□□ 1.55
CLK3-225ENST00000569063 MAP3K12Q12852 859 aa24.72■■□□□ 1.55
CLK3-225ENST00000569063 TTF1Q15361 905 aaPredicted RBP24.72■■□□□ 1.55
CLK3-225ENST00000569063 FAM43AQ8N2R8 423 aa24.72■■□□□ 1.55
CLK3-225ENST00000569063 ZCCHC17Q9NP64 241 aaKnown RBP24.72■■□□□ 1.55
CLK3-225ENST00000569063 CTNND1O60716 968 aaKnown RBP24.71■■□□□ 1.55
CLK3-225ENST00000569063 SLURP2P0DP57 97 aa24.71■■□□□ 1.55
CLK3-225ENST00000569063 PKN2Q16513 984 aaKnown RBP24.71■■□□□ 1.55
CLK3-225ENST00000569063 CERS3Q8IU89 383 aa24.71■■□□□ 1.55
CLK3-225ENST00000569063 MAGEB6Q8N7X4 407 aa24.71■■□□□ 1.55
CLK3-225ENST00000569063 LRRCC1Q9C099 1032 aa24.71■■□□□ 1.55
CLK3-225ENST00000569063 DHX36Q9H2U1 1008 aaKnown RBP24.71■■□□□ 1.55
CLK3-225ENST00000569063 TGFBRAP1Q8WUH2 860 aa24.7■■□□□ 1.54
CLK3-225ENST00000569063 PICK1Q9NRD5 415 aa24.7■■□□□ 1.54
CLK3-225ENST00000569063 CCDC85CA6NKD9 419 aa24.69■■□□□ 1.54
CLK3-225ENST00000569063 BTBD19C9JJ37 291 aa24.69■■□□□ 1.54
CLK3-225ENST00000569063 PTPRAP18433 802 aa24.69■■□□□ 1.54
CLK3-225ENST00000569063 DCTPP1Q9H773 170 aa24.69■■□□□ 1.54
CLK3-225ENST00000569063 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.69■■□□□ 1.54
CLK3-225ENST00000569063 ZFYVE28Q9HCC9 887 aa24.69■■□□□ 1.54
CLK3-225ENST00000569063 PI4KBQ9UBF8 816 aa24.69■■□□□ 1.54
CLK3-225ENST00000569063 FLT1P17948 1338 aa24.68■■□□□ 1.54
CLK3-225ENST00000569063 CXCL11O14625 94 aa24.68■■□□□ 1.54
CLK3-225ENST00000569063 ATP5JP18859 108 aa24.68■■□□□ 1.54
CLK3-225ENST00000569063 DYNLL1P63167 89 aaKnown RBP24.68■■□□□ 1.54
CLK3-225ENST00000569063 TAF1CQ15572 869 aaPredicted RBP24.68■■□□□ 1.54
CLK3-225ENST00000569063 BCL11AQ9H165 835 aa24.68■■□□□ 1.54
CLK3-225ENST00000569063 HERC5Q9UII4 1024 aaKnown RBP24.68■■□□□ 1.54
CLK3-225ENST00000569063 MAPKAPK5Q8IW41 473 aa24.67■■□□□ 1.54
CLK3-225ENST00000569063 MIGA1Q8NAN2 632 aa24.67■■□□□ 1.54
CLK3-225ENST00000569063 ZHX2Q9Y6X8 837 aa24.67■■□□□ 1.54
CLK3-225ENST00000569063 FAM196BA6NMK8 535 aa24.66■■□□□ 1.54
CLK3-225ENST00000569063 SP3Q02447 781 aa24.66■■□□□ 1.54
CLK3-225ENST00000569063 MOGSQ13724 837 aa24.66■■□□□ 1.54
CLK3-225ENST00000569063 ANKRD23Q86SG2 305 aa24.66■■□□□ 1.54
CLK3-225ENST00000569063 METTL16Q86W50 562 aaKnown RBP24.66■■□□□ 1.54
CLK3-225ENST00000569063 DNAJC2Q99543 621 aaKnown RBP24.66■■□□□ 1.54
CLK3-225ENST00000569063 AFG3L2Q9Y4W6 797 aa24.66■■□□□ 1.54
CLK3-225ENST00000569063 FOCADQ5VW36 1801 aa24.65■■□□□ 1.54
CLK3-225ENST00000569063 GOLIM4O00461 696 aa24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms