RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 CCDC171Q6TFL3 1326 aa10.15□□□□□ -0.78
SF3B3-212ENST00000568539 POTECB2RU33 542 aa10.15□□□□□ -0.78
SF3B3-212ENST00000568539 WNT10BO00744 389 aa10.15□□□□□ -0.78
SF3B3-212ENST00000568539 GPAA1O43292 621 aa10.15□□□□□ -0.78
SF3B3-212ENST00000568539 KIF4BQ2VIQ3 1234 aa10.15□□□□□ -0.78
SF3B3-212ENST00000568539 TBC1D10BQ4KMP7 808 aaPredicted RBP10.15□□□□□ -0.78
SF3B3-212ENST00000568539 RBM26Q5T8P6 1007 aaKnown RBP10.15□□□□□ -0.78
SF3B3-212ENST00000568539 CDC42EP5Q6NZY7 148 aa10.15□□□□□ -0.78
SF3B3-212ENST00000568539 SH3RF3Q8TEJ3 882 aaPredicted RBP10.15□□□□□ -0.78
SF3B3-212ENST00000568539 TDRD3Q9H7E2 651 aaKnown RBP10.15□□□□□ -0.78
SF3B3-212ENST00000568539 ADARB2Q9NS39 739 aaKnown RBP10.15□□□□□ -0.78
SF3B3-212ENST00000568539 HACL1Q9UJ83 578 aa10.15□□□□□ -0.78
SF3B3-212ENST00000568539 MYH13Q9UKX3 1938 aa10.14□□□□□ -0.79
SF3B3-212ENST00000568539 IQCA1LA6NCM1 817 aa10.14□□□□□ -0.79
SF3B3-212ENST00000568539 FOXP2O15409 715 aa10.14□□□□□ -0.79
SF3B3-212ENST00000568539 PLCG2P16885 1265 aa10.14□□□□□ -0.79
SF3B3-212ENST00000568539 HIRAP54198 1017 aaPredicted RBP10.14□□□□□ -0.79
SF3B3-212ENST00000568539 MFAP1P55081 439 aaKnown RBP10.14□□□□□ -0.79
SF3B3-212ENST00000568539 NBPF9Q3BBW0 867 aa10.14□□□□□ -0.79
SF3B3-212ENST00000568539 POTEHQ6S545 545 aa10.14□□□□□ -0.79
SF3B3-212ENST00000568539 IFNL1Q8IU54 200 aa10.14□□□□□ -0.79
SF3B3-212ENST00000568539 TRPM4Q8TD43 1214 aa10.14□□□□□ -0.79
SF3B3-212ENST00000568539 TAF1DQ9H5J8 278 aaPredicted RBP10.14□□□□□ -0.79
SF3B3-212ENST00000568539 USP40Q9NVE5 1235 aa10.14□□□□□ -0.79
SF3B3-212ENST00000568539 PRKAB2O43741 272 aa10.13□□□□□ -0.79
SF3B3-212ENST00000568539 MYO1BO43795 1136 aa10.13□□□□□ -0.79
SF3B3-212ENST00000568539 WDHD1O75717 1129 aaPredicted RBP10.13□□□□□ -0.79
SF3B3-212ENST00000568539 PRKCSHP14314 528 aaPredicted RBP10.13□□□□□ -0.79
SF3B3-212ENST00000568539 GNAT2P19087 354 aa10.13□□□□□ -0.79
SF3B3-212ENST00000568539 EPHX2P34913 555 aa10.13□□□□□ -0.79
SF3B3-212ENST00000568539 VPS53Q5VIR6 699 aa10.13□□□□□ -0.79
SF3B3-212ENST00000568539 USP50Q70EL3 339 aaPredicted RBP10.13□□□□□ -0.79
SF3B3-212ENST00000568539 TEX11Q8IYF3 940 aa10.13□□□□□ -0.79
SF3B3-212ENST00000568539 IDI2Q9BXS1 227 aa10.13□□□□□ -0.79
SF3B3-212ENST00000568539 MFRPQ9BY79 579 aa10.13□□□□□ -0.79
SF3B3-212ENST00000568539 CRNKL1Q9BZJ0 848 aaKnown RBP10.13□□□□□ -0.79
SF3B3-212ENST00000568539 ZNF70Q9UC06 446 aaPredicted RBP10.13□□□□□ -0.79
SF3B3-212ENST00000568539 SLC4A4Q9Y6R1 1079 aa10.13□□□□□ -0.79
SF3B3-212ENST00000568539 ASTN2O75129 1339 aaPredicted RBP10.12□□□□□ -0.79
SF3B3-212ENST00000568539 ADAMTSL1Q8N6G6 1762 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 CLRN2A0PK11 232 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 GSG1L2A8MUP6 293 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 PATL2C9JE40 543 aaKnown RBP10.12□□□□□ -0.79
SF3B3-212ENST00000568539 MAP3K13O43283 966 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 HSPD1P10809 573 aaKnown RBP10.12□□□□□ -0.79
SF3B3-212ENST00000568539 VEGFAP15692 232 aaPredicted RBP10.12□□□□□ -0.79
SF3B3-212ENST00000568539 CACNB3P54284 484 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 PTH1RQ03431 593 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 NFIAQ12857 509 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 SDR42E1Q8WUS8 393 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 KLRG1Q96E93 195 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 DSCC1Q9BVC3 393 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 LSG1Q9H089 658 aaKnown RBP10.12□□□□□ -0.79
SF3B3-212ENST00000568539 RRAGCQ9HB90 399 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 EPB41L4AQ9HCS5 686 aaPredicted RBP10.12□□□□□ -0.79
SF3B3-212ENST00000568539 NMRK2Q9NPI5 230 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 DDX4Q9NQI0 724 aaKnown RBP10.12□□□□□ -0.79
SF3B3-212ENST00000568539 ATP8A2Q9NTI2 1148 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 FAM198AQ9UFP1 575 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 MKRN1Q9UHC7 482 aaKnown RBP10.12□□□□□ -0.79
SF3B3-212ENST00000568539 CCDC88AQ3V6T2 1871 aa10.12□□□□□ -0.79
SF3B3-212ENST00000568539 RPAP1Q9BWH6 1393 aaPredicted RBP10.12□□□□□ -0.79
SF3B3-212ENST00000568539 FLT1P17948 1338 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 ENTPD3O75355 529 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 REC8O95072 547 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 SEC24BO95487 1268 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 USP5P45974 858 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 ANGEL2Q5VTE6 544 aaKnown RBP10.11□□□□□ -0.79
SF3B3-212ENST00000568539 FKBP1CQ5VVH2 108 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 GIMAP6Q6P9H5 292 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 KIAA1211Q6ZU35 1233 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 PNMA8AQ86V59 439 aaPredicted RBP10.11□□□□□ -0.79
SF3B3-212ENST00000568539 MAPKAPK5Q8IW41 473 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 TGFBRAP1Q8WUH2 860 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 MAP4K1Q92918 833 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 BACH2Q9BYV9 841 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 DCP1AQ9NPI6 582 aaPredicted RBP10.11□□□□□ -0.79
SF3B3-212ENST00000568539 ANO2Q9NQ90 1003 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 GGA3Q9NZ52 723 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 TMOD2Q9NZR1 351 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 PGAP2Q9UHJ9 254 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 CNTNAP1P78357 1384 aa10.11□□□□□ -0.79
SF3B3-212ENST00000568539 TCP10L2B9ZVM9 353 aa10.1□□□□□ -0.79
SF3B3-212ENST00000568539 EIF5BO60841 1220 aaKnown RBP10.1□□□□□ -0.79
SF3B3-212ENST00000568539 APPP05067 770 aa10.1□□□□□ -0.79
SF3B3-212ENST00000568539 PICALMQ13492 652 aa10.1□□□□□ -0.79
SF3B3-212ENST00000568539 ALX1Q15699 326 aa10.1□□□□□ -0.79
SF3B3-212ENST00000568539 FAM83AQ86UY5 434 aa10.1□□□□□ -0.79
SF3B3-212ENST00000568539 IFNL3Q8IZI9 196 aa10.1□□□□□ -0.79
SF3B3-212ENST00000568539 JMYQ8N9B5 988 aa10.1□□□□□ -0.79
SF3B3-212ENST00000568539 ZC3H15Q8WU90 426 aaKnown RBP10.1□□□□□ -0.79
SF3B3-212ENST00000568539 NACAP1Q9BZK3 213 aa10.1□□□□□ -0.79
SF3B3-212ENST00000568539 OSBPL5Q9H0X9 879 aaPredicted RBP10.1□□□□□ -0.79
SF3B3-212ENST00000568539 VEZTQ9HBM0 779 aa10.1□□□□□ -0.79
SF3B3-212ENST00000568539 ZMYM6O95789 1325 aa10.09□□□□□ -0.79
SF3B3-212ENST00000568539 PITPNM2Q9BZ72 1349 aa10.09□□□□□ -0.79
SF3B3-212ENST00000568539 MYO5AQ9Y4I1 1855 aaKnown RBP10.09□□□□□ -0.79
SF3B3-212ENST00000568539 EPB41L2O43491 1005 aaKnown RBP10.09□□□□□ -0.79
SF3B3-212ENST00000568539 FGAP02671 866 aa10.09□□□□□ -0.79
SF3B3-212ENST00000568539 TDO2P48775 406 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms