RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 ZNF468Q5VIY5 522 aaPredicted RBP7.92□□□□□ -1.14
VPS39-209ENST00000568029 TREML4Q6UXN2 200 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 SLC16A10Q8TF71 515 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 POLR3GLQ9BT43 218 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 CHRDQ9H2X0 955 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 PRKRIP1Q9H875 184 aaPredicted RBP7.92□□□□□ -1.14
VPS39-209ENST00000568029 MBIPQ9NS73 344 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 TLR7Q9NYK1 1049 aaKnown RBP7.92□□□□□ -1.14
VPS39-209ENST00000568029 ZFATQ9P243 1243 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 NSFL1CQ9UNZ2 370 aaKnown RBP7.92□□□□□ -1.14
VPS39-209ENST00000568029 COL24A1Q17RW2 1714 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 ST20-MTHFSA0A0A6YYL1 179 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 GPR25O00155 361 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 RARAP10276 462 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 NFKB1P19838 968 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 MX2P20592 715 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 VAMP1P23763 118 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 TARSP26639 723 aaKnown RBP7.91□□□□□ -1.14
VPS39-209ENST00000568029 MAP2K3P46734 347 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 ZC3H6P61129 1189 aaKnown RBP7.91□□□□□ -1.14
VPS39-209ENST00000568029 PCSK7Q16549 785 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 NUTM2GQ5VZR2 741 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 NLGN2Q8NFZ4 835 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 FOXD3Q9UJU5 478 aaPredicted RBP7.91□□□□□ -1.14
VPS39-209ENST00000568029 OVOS2A0A0G2JMS6 1433 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 OVOS2A0A0J9YW53 1432 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 OVOS2Q6IE36 1432 aa7.91□□□□□ -1.14
VPS39-209ENST00000568029 TULP4Q9NRJ4 1543 aa7.9□□□□□ -1.14
VPS39-209ENST00000568029 COL5A2P05997 1499 aaPredicted RBP7.9□□□□□ -1.14
VPS39-209ENST00000568029 ANKARQ7Z5J8 1434 aa7.9□□□□□ -1.14
VPS39-209ENST00000568029 MMP20O60882 483 aa7.9□□□□□ -1.14
VPS39-209ENST00000568029 KIF4AO95239 1232 aa7.9□□□□□ -1.14
VPS39-209ENST00000568029 PSAPP07602 524 aa7.9□□□□□ -1.14
VPS39-209ENST00000568029 ARAFP10398 606 aa7.9□□□□□ -1.14
VPS39-209ENST00000568029 BMP4P12644 408 aa7.9□□□□□ -1.14
VPS39-209ENST00000568029 NRLP54845 237 aa7.9□□□□□ -1.14
VPS39-209ENST00000568029 NFX1Q12986 1120 aaKnown RBP7.9□□□□□ -1.14
VPS39-209ENST00000568029 GRIN2CQ14957 1233 aa7.9□□□□□ -1.14
VPS39-209ENST00000568029 C1orf127Q8N9H9 656 aa7.9□□□□□ -1.14
VPS39-209ENST00000568029 CNTN3Q9P232 1028 aa7.9□□□□□ -1.14
VPS39-209ENST00000568029 PCNTO95613 3336 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 GPRASP1Q5JY77 1395 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 MAP3K5Q99683 1374 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 C2CD2LO14523 706 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 GIPC1O14908 333 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 YBX3P16989 372 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS39-209ENST00000568029 CES1P23141 567 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 PLAURQ03405 335 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 GPR162Q16538 588 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 NPM2Q86SE8 214 aaKnown RBP7.89□□□□□ -1.15
VPS39-209ENST00000568029 GALNT12Q8IXK2 581 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 GPR161Q8N6U8 529 aaKnown RBP7.89□□□□□ -1.15
VPS39-209ENST00000568029 TRPM4Q8TD43 1214 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 ZNF526Q8TF50 670 aaPredicted RBP7.89□□□□□ -1.15
VPS39-209ENST00000568029 IRF7Q92985 503 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 TNFRSF25Q93038 417 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 BHMTQ93088 406 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 PRR12Q9ULL5 1215 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 NHSQ6T4R5 1651 aa7.89□□□□□ -1.15
VPS39-209ENST00000568029 PHF20L1A8MW92 1017 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 EDN3P14138 238 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 HSPA6P17066 643 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 GPLD1P80108 840 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 SLC15A2Q16348 729 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 ZNF827Q17R98 1081 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 COL13A1Q5TAT6 717 aaPredicted RBP7.88□□□□□ -1.15
VPS39-209ENST00000568029 DHX32Q7L7V1 743 aaKnown RBP7.88□□□□□ -1.15
VPS39-209ENST00000568029 KRT25Q7Z3Z0 450 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 TMC4Q7Z404 712 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 CCDC74AQ96AQ1 378 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 PRAM1Q96QH2 718 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 MTFR1LQ9H019 292 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 MRS2Q9HD23 443 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 SALL4Q9UJQ4 1053 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 ITSN1Q15811 1721 aa7.88□□□□□ -1.15
VPS39-209ENST00000568029 ADCY9O60503 1353 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 KTN1Q86UP2 1357 aaKnown RBP7.87□□□□□ -1.15
VPS39-209ENST00000568029 ADARB2-AS1A8MUL3 147 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 EREGO14944 169 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 PLSCR1O15162 318 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 ADH6P28332 368 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 GNA15P30679 374 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 TMF1P82094 1093 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 HNRNPUQ00839 825 aaKnown RBP eCLIP7.87□□□□□ -1.15
VPS39-209ENST00000568029 HYAL2Q12891 473 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 RALBP1Q15311 655 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 LCE2AQ5TA79 106 aaPredicted RBP7.87□□□□□ -1.15
VPS39-209ENST00000568029 SYT9Q86SS6 491 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 TCP11L2Q8N4U5 519 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 MDFIQ99750 246 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 ADGRB1O14514 1584 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 BTAF1O14981 1849 aa7.87□□□□□ -1.15
VPS39-209ENST00000568029 WDR90Q96KV7 1748 aa7.86□□□□□ -1.15
VPS39-209ENST00000568029 RPGRIP1LQ68CZ1 1315 aa7.86□□□□□ -1.15
VPS39-209ENST00000568029 RBM25P49756 843 aaKnown RBP7.86□□□□□ -1.15
VPS39-209ENST00000568029 DAB2P98082 770 aa7.86□□□□□ -1.15
VPS39-209ENST00000568029 SRSF11Q05519 484 aaKnown RBP7.86□□□□□ -1.15
VPS39-209ENST00000568029 TXNRD1Q16881 649 aa7.86□□□□□ -1.15
VPS39-209ENST00000568029 KIAA0319Q5VV43 1072 aa7.86□□□□□ -1.15
VPS39-209ENST00000568029 DUSP9Q99956 384 aaKnown RBP7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms