RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 DGKZQ13574 1117 aa22.52■■□□□ 1.2
CLN3-221ENST00000566057 HSP90AB4PQ58FF6 505 aa22.52■■□□□ 1.2
CLN3-221ENST00000566057 OTUD5Q96G74 571 aa22.52■■□□□ 1.2
CLN3-221ENST00000566057 CFHR5Q9BXR6 569 aa22.52■■□□□ 1.2
CLN3-221ENST00000566057 PIH1D3Q9NQM4 214 aaKnown RBP22.52■■□□□ 1.2
CLN3-221ENST00000566057 ZNF112Q9UJU3 913 aa22.52■■□□□ 1.2
CLN3-221ENST00000566057 TESPA1A2RU30 521 aaPredicted RBP22.51■■□□□ 1.19
CLN3-221ENST00000566057 SPDYE5A6NIY4 337 aa22.51■■□□□ 1.19
CLN3-221ENST00000566057 PICALMQ13492 652 aa22.51■■□□□ 1.19
CLN3-221ENST00000566057 ZNF296Q8WUU4 475 aaPredicted RBP22.51■■□□□ 1.19
CLN3-221ENST00000566057 ATRNL1Q5VV63 1379 aa22.5■■□□□ 1.19
CLN3-221ENST00000566057 DDTLA6NHG4 134 aaPredicted RBP22.5■■□□□ 1.19
CLN3-221ENST00000566057 GPR25O00155 361 aa22.5■■□□□ 1.19
CLN3-221ENST00000566057 ALDH1A1P00352 501 aa22.5■■□□□ 1.19
CLN3-221ENST00000566057 SLURP2P0DP57 97 aa22.5■■□□□ 1.19
CLN3-221ENST00000566057 NDUFB9Q9Y6M9 179 aa22.5■■□□□ 1.19
CLN3-221ENST00000566057 NAA16Q6N069 864 aaPredicted RBP22.49■■□□□ 1.19
CLN3-221ENST00000566057 ADGRA1Q86SQ6 560 aa22.49■■□□□ 1.19
CLN3-221ENST00000566057 ERO1BQ86YB8 467 aa22.49■■□□□ 1.19
CLN3-221ENST00000566057 ZSCAN29Q8IWY8 852 aaPredicted RBP22.49■■□□□ 1.19
CLN3-221ENST00000566057 KIF1BPQ96EK5 621 aa22.49■■□□□ 1.19
CLN3-221ENST00000566057 FOCADQ5VW36 1801 aa22.48■■□□□ 1.19
CLN3-221ENST00000566057 NOM1Q5C9Z4 860 aaKnown RBP22.48■■□□□ 1.19
CLN3-221ENST00000566057 BRI3BPQ8WY22 251 aa22.48■■□□□ 1.19
CLN3-221ENST00000566057 YTHDC1Q96MU7 727 aaKnown RBP22.48■■□□□ 1.19
CLN3-221ENST00000566057 PHF20L1A8MW92 1017 aa22.47■■□□□ 1.19
CLN3-221ENST00000566057 GTF2A2P52657 109 aa22.47■■□□□ 1.19
CLN3-221ENST00000566057 SH3RF3Q8TEJ3 882 aaPredicted RBP22.47■■□□□ 1.19
CLN3-221ENST00000566057 BCL11AQ9H165 835 aa22.47■■□□□ 1.19
CLN3-221ENST00000566057 CCL15-CCL14A0A0B4J2E2 113 aa22.46■■□□□ 1.19
CLN3-221ENST00000566057 IRF6O14896 467 aa22.46■■□□□ 1.19
CLN3-221ENST00000566057 RAB11FIP3O75154 756 aa22.46■■□□□ 1.19
CLN3-221ENST00000566057 NPM3O75607 178 aaKnown RBP22.46■■□□□ 1.19
CLN3-221ENST00000566057 MAP4K4O95819 1239 aaPredicted RBP22.46■■□□□ 1.19
CLN3-221ENST00000566057 MAP3K10Q02779 954 aa22.46■■□□□ 1.19
CLN3-221ENST00000566057 PPIL2Q13356 520 aa22.46■■□□□ 1.19
CLN3-221ENST00000566057 CCL15Q16663 113 aa22.46■■□□□ 1.19
CLN3-221ENST00000566057 OTUD7BQ6GQQ9 843 aa22.46■■□□□ 1.19
CLN3-221ENST00000566057 CLASRPQ8N2M8 674 aaKnown RBP22.46■■□□□ 1.19
CLN3-221ENST00000566057 ANTXR1Q9H6X2 564 aa22.46■■□□□ 1.19
CLN3-221ENST00000566057 AATFQ9NY61 560 aaKnown RBP eCLIP22.46■■□□□ 1.19
CLN3-221ENST00000566057 CRHR2Q13324 411 aa22.45■■□□□ 1.18
CLN3-221ENST00000566057 CTU1Q7Z7A3 348 aaKnown RBP22.45■■□□□ 1.18
CLN3-221ENST00000566057 TEX11Q8IYF3 940 aa22.45■■□□□ 1.18
CLN3-221ENST00000566057 FKTNO75072 461 aa22.44■■□□□ 1.18
CLN3-221ENST00000566057 IDH1O75874 414 aaKnown RBP22.44■■□□□ 1.18
CLN3-221ENST00000566057 PPP4CP60510 307 aa22.44■■□□□ 1.18
CLN3-221ENST00000566057 PPATQ06203 517 aa22.44■■□□□ 1.18
CLN3-221ENST00000566057 DOCK1Q14185 1865 aa22.44■■□□□ 1.18
CLN3-221ENST00000566057 NOL9Q5SY16 702 aaKnown RBP22.44■■□□□ 1.18
CLN3-221ENST00000566057 PHIPQ8WWQ0 1821 aa22.44■■□□□ 1.18
CLN3-221ENST00000566057 SIPA1L1O43166 1804 aa22.43■■□□□ 1.18
CLN3-221ENST00000566057 BAG3O95817 575 aa22.43■■□□□ 1.18
CLN3-221ENST00000566057 FAM43AQ8N2R8 423 aa22.43■■□□□ 1.18
CLN3-221ENST00000566057 NOL10Q9BSC4 688 aaKnown RBP22.43■■□□□ 1.18
CLN3-221ENST00000566057 OSBPL5Q9H0X9 879 aaPredicted RBP22.43■■□□□ 1.18
CLN3-221ENST00000566057 CCDC85CA6NKD9 419 aa22.42■■□□□ 1.18
CLN3-221ENST00000566057 IFIT2P09913 472 aaKnown RBP22.42■■□□□ 1.18
CLN3-221ENST00000566057 CETPP11597 493 aa22.42■■□□□ 1.18
CLN3-221ENST00000566057 CYP7A1P22680 504 aa22.42■■□□□ 1.18
CLN3-221ENST00000566057 DYNLL1P63167 89 aaKnown RBP22.42■■□□□ 1.18
CLN3-221ENST00000566057 SNAPC2Q13487 334 aa22.42■■□□□ 1.18
CLN3-221ENST00000566057 ATAD5Q96QE3 1844 aa22.42■■□□□ 1.18
CLN3-221ENST00000566057 COL2A1P02458 1487 aaPredicted RBP22.41■■□□□ 1.18
CLN3-221ENST00000566057 PTPRFP10586 1907 aa22.41■■□□□ 1.18
CLN3-221ENST00000566057 MYH1P12882 1939 aa22.41■■□□□ 1.18
CLN3-221ENST00000566057 FAM196BA6NMK8 535 aa22.41■■□□□ 1.18
CLN3-221ENST00000566057 IGSF3O75054 1194 aa22.41■■□□□ 1.18
CLN3-221ENST00000566057 MAGEB6Q8N7X4 407 aa22.41■■□□□ 1.18
CLN3-221ENST00000566057 BTBD19C9JJ37 291 aa22.4■■□□□ 1.18
CLN3-221ENST00000566057 TBC1D12O60347 775 aa22.4■■□□□ 1.18
CLN3-221ENST00000566057 PLCG2P16885 1265 aa22.4■■□□□ 1.18
CLN3-221ENST00000566057 RRP1P56182 461 aaKnown RBP22.4■■□□□ 1.18
CLN3-221ENST00000566057 SCYL3Q8IZE3 742 aa22.4■■□□□ 1.18
CLN3-221ENST00000566057 TGFBRAP1Q8WUH2 860 aa22.4■■□□□ 1.18
CLN3-221ENST00000566057 KCNH4Q9UQ05 1017 aa22.4■■□□□ 1.18
CLN3-221ENST00000566057 SMARCA5O60264 1052 aaPredicted RBP22.39■■□□□ 1.17
CLN3-221ENST00000566057 TAF1CQ15572 869 aaPredicted RBP22.39■■□□□ 1.17
CLN3-221ENST00000566057 MAPKAPK5Q8IW41 473 aa22.39■■□□□ 1.17
CLN3-221ENST00000566057 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.39■■□□□ 1.17
CLN3-221ENST00000566057 CTNND1O60716 968 aaKnown RBP22.38■■□□□ 1.17
CLN3-221ENST00000566057 PTPRAP18433 802 aa22.38■■□□□ 1.17
CLN3-221ENST00000566057 MAP3K12Q12852 859 aa22.38■■□□□ 1.17
CLN3-221ENST00000566057 MOGSQ13724 837 aa22.38■■□□□ 1.17
CLN3-221ENST00000566057 MIGA1Q8NAN2 632 aa22.38■■□□□ 1.17
CLN3-221ENST00000566057 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.38■■□□□ 1.17
CLN3-221ENST00000566057 LRRCC1Q9C099 1032 aa22.38■■□□□ 1.17
CLN3-221ENST00000566057 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.38■■□□□ 1.17
CLN3-221ENST00000566057 FLT1P17948 1338 aa22.37■■□□□ 1.17
CLN3-221ENST00000566057 EDC3Q96F86 508 aaKnown RBP22.37■■□□□ 1.17
CLN3-221ENST00000566057 DNAJC2Q99543 621 aaKnown RBP22.37■■□□□ 1.17
CLN3-221ENST00000566057 DCTPP1Q9H773 170 aa22.37■■□□□ 1.17
CLN3-221ENST00000566057 ZFYVE28Q9HCC9 887 aa22.37■■□□□ 1.17
CLN3-221ENST00000566057 PICK1Q9NRD5 415 aa22.37■■□□□ 1.17
CLN3-221ENST00000566057 PCDHB15Q9Y5E8 787 aa22.37■■□□□ 1.17
CLN3-221ENST00000566057 ZHX2Q9Y6X8 837 aa22.37■■□□□ 1.17
CLN3-221ENST00000566057 MYH7P12883 1935 aa22.36■■□□□ 1.17
CLN3-221ENST00000566057 GOLIM4O00461 696 aa22.36■■□□□ 1.17
CLN3-221ENST00000566057 CAP1Q01518 475 aa22.36■■□□□ 1.17
CLN3-221ENST00000566057 RRP1BQ14684 758 aaKnown RBP22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms