RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CCL15-CCL14A0A0B4J2E2 113 aa18.28■□□□□ 0.52
CLN3-213ENST00000565047 MS4A1P11836 297 aa18.28■□□□□ 0.52
CLN3-213ENST00000565047 PPATQ06203 517 aa18.28■□□□□ 0.52
CLN3-213ENST00000565047 CCL15Q16663 113 aa18.28■□□□□ 0.52
CLN3-213ENST00000565047 FAM43AQ8N2R8 423 aa18.28■□□□□ 0.52
CLN3-213ENST00000565047 CCDC8Q9H0W5 538 aaPredicted RBP18.28■□□□□ 0.52
CLN3-213ENST00000565047 SNRKQ9NRH2 765 aa18.28■□□□□ 0.52
CLN3-213ENST00000565047 COG6Q9Y2V7 657 aa18.28■□□□□ 0.52
CLN3-213ENST00000565047 MAP4K4O95819 1239 aaPredicted RBP18.27■□□□□ 0.52
CLN3-213ENST00000565047 OS9Q13438 667 aaPredicted RBP18.27■□□□□ 0.52
CLN3-213ENST00000565047 MOGSQ13724 837 aa18.27■□□□□ 0.52
CLN3-213ENST00000565047 CCDC158Q5M9N0 1113 aa18.27■□□□□ 0.52
CLN3-213ENST00000565047 OTUD7BQ6GQQ9 843 aa18.27■□□□□ 0.52
CLN3-213ENST00000565047 HPS5Q9UPZ3 1129 aa18.27■□□□□ 0.52
CLN3-213ENST00000565047 KCNH4Q9UQ05 1017 aa18.27■□□□□ 0.52
CLN3-213ENST00000565047 EXOC6BQ9Y2D4 811 aa18.27■□□□□ 0.52
CLN3-213ENST00000565047 BTBD19C9JJ37 291 aa18.26■□□□□ 0.51
CLN3-213ENST00000565047 LDHCP07864 332 aa18.26■□□□□ 0.51
CLN3-213ENST00000565047 ZAP70P43403 619 aa18.26■□□□□ 0.51
CLN3-213ENST00000565047 GSTO1P78417 241 aa18.26■□□□□ 0.51
CLN3-213ENST00000565047 TTC39AQ5SRH9 613 aa18.26■□□□□ 0.51
CLN3-213ENST00000565047 C20orf194Q5TEA3 1177 aa18.26■□□□□ 0.51
CLN3-213ENST00000565047 ADGRA1Q86SQ6 560 aa18.26■□□□□ 0.51
CLN3-213ENST00000565047 RPAP2Q8IXW5 612 aaPredicted RBP18.26■□□□□ 0.51
CLN3-213ENST00000565047 PIH1D3Q9NQM4 214 aaKnown RBP18.26■□□□□ 0.51
CLN3-213ENST00000565047 RAI14Q9P0K7 980 aa18.26■□□□□ 0.51
CLN3-213ENST00000565047 DDX19BQ9UMR2 479 aa18.26■□□□□ 0.51
CLN3-213ENST00000565047 IGSF3O75054 1194 aa18.25■□□□□ 0.51
CLN3-213ENST00000565047 CETPP11597 493 aa18.25■□□□□ 0.51
CLN3-213ENST00000565047 PPP4CP60510 307 aa18.25■□□□□ 0.51
CLN3-213ENST00000565047 SNAPC2Q13487 334 aa18.25■□□□□ 0.51
CLN3-213ENST00000565047 ZCCHC17Q9NP64 241 aaKnown RBP18.25■□□□□ 0.51
CLN3-213ENST00000565047 LRP2BPQ9P2M1 347 aa18.25■□□□□ 0.51
CLN3-213ENST00000565047 COL2A1P02458 1487 aaPredicted RBP18.25■□□□□ 0.51
CLN3-213ENST00000565047 DOCK2Q92608 1830 aa18.24■□□□□ 0.51
CLN3-213ENST00000565047 TBC1D12O60347 775 aa18.24■□□□□ 0.51
CLN3-213ENST00000565047 PICALMQ13492 652 aa18.24■□□□□ 0.51
CLN3-213ENST00000565047 OTOP1Q7RTM1 612 aa18.24■□□□□ 0.51
CLN3-213ENST00000565047 RHPN1Q8TCX5 695 aa18.24■□□□□ 0.51
CLN3-213ENST00000565047 PDE3AQ14432 1141 aa18.23■□□□□ 0.51
CLN3-213ENST00000565047 FBXO46Q6PJ61 603 aaPredicted RBP18.23■□□□□ 0.51
CLN3-213ENST00000565047 ERC1Q8IUD2 1116 aa18.23■□□□□ 0.51
CLN3-213ENST00000565047 SH3RF3Q8TEJ3 882 aaPredicted RBP18.23■□□□□ 0.51
CLN3-213ENST00000565047 OSBPL5Q9H0X9 879 aaPredicted RBP18.23■□□□□ 0.51
CLN3-213ENST00000565047 CENPFP49454 3210 aa18.23■□□□□ 0.51
CLN3-213ENST00000565047 MYO5AQ9Y4I1 1855 aaKnown RBP18.22■□□□□ 0.51
CLN3-213ENST00000565047 SP3Q02447 781 aa18.22■□□□□ 0.51
CLN3-213ENST00000565047 SCYL3Q8IZE3 742 aa18.22■□□□□ 0.51
CLN3-213ENST00000565047 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.22■□□□□ 0.51
CLN3-213ENST00000565047 CD99L2Q8TCZ2 262 aa18.22■□□□□ 0.51
CLN3-213ENST00000565047 MAST2Q6P0Q8 1798 aa18.22■□□□□ 0.51
CLN3-213ENST00000565047 AK9Q5TCS8 1911 aa18.21■□□□□ 0.51
CLN3-213ENST00000565047 CXCL11O14625 94 aa18.21■□□□□ 0.51
CLN3-213ENST00000565047 TLR2O60603 784 aa18.21■□□□□ 0.51
CLN3-213ENST00000565047 PTPRAP18433 802 aa18.21■□□□□ 0.51
CLN3-213ENST00000565047 RRP1BQ14684 758 aaKnown RBP18.21■□□□□ 0.51
CLN3-213ENST00000565047 TAF1CQ15572 869 aaPredicted RBP18.21■□□□□ 0.51
CLN3-213ENST00000565047 NAA16Q6N069 864 aaPredicted RBP18.21■□□□□ 0.51
CLN3-213ENST00000565047 AACSQ86V21 672 aa18.21■□□□□ 0.51
CLN3-213ENST00000565047 ZSCAN29Q8IWY8 852 aaPredicted RBP18.21■□□□□ 0.51
CLN3-213ENST00000565047 ERO1AQ96HE7 468 aa18.21■□□□□ 0.51
CLN3-213ENST00000565047 ANTXR1Q9H6X2 564 aa18.21■□□□□ 0.51
CLN3-213ENST00000565047 ZFYVE28Q9HCC9 887 aa18.21■□□□□ 0.51
CLN3-213ENST00000565047 AFG3L2Q9Y4W6 797 aa18.21■□□□□ 0.51
CLN3-213ENST00000565047 NDUFB9Q9Y6M9 179 aa18.21■□□□□ 0.51
CLN3-213ENST00000565047 ADGRA2Q96PE1 1338 aa18.21■□□□□ 0.51
CLN3-213ENST00000565047 CTNND1O60716 968 aaKnown RBP18.2■□□□□ 0.5
CLN3-213ENST00000565047 HSP90AB4PQ58FF6 505 aa18.2■□□□□ 0.5
CLN3-213ENST00000565047 GPAT2Q6NUI2 795 aa18.2■□□□□ 0.5
CLN3-213ENST00000565047 ANKRD23Q86SG2 305 aa18.2■□□□□ 0.5
CLN3-213ENST00000565047 METTL16Q86W50 562 aaKnown RBP18.2■□□□□ 0.5
CLN3-213ENST00000565047 IL1RAPL2Q9NP60 686 aa18.2■□□□□ 0.5
CLN3-213ENST00000565047 AATFQ9NY61 560 aaKnown RBP eCLIP18.2■□□□□ 0.5
CLN3-213ENST00000565047 BRCA2P51587 3418 aa18.2■□□□□ 0.5
CLN3-213ENST00000565047 PHIPQ8WWQ0 1821 aa18.19■□□□□ 0.5
CLN3-213ENST00000565047 C17orf99Q6UX52 265 aa18.19■□□□□ 0.5
CLN3-213ENST00000565047 TEX11Q8IYF3 940 aa18.19■□□□□ 0.5
CLN3-213ENST00000565047 TRIM17Q9Y577 477 aa18.19■□□□□ 0.5
CLN3-213ENST00000565047 ZHX2Q9Y6X8 837 aa18.19■□□□□ 0.5
CLN3-213ENST00000565047 SIPA1L1O43166 1804 aa18.19■□□□□ 0.5
CLN3-213ENST00000565047 A0A0G2JLL6 359 aaPredicted RBP18.18■□□□□ 0.5
CLN3-213ENST00000565047 FAM196BA6NMK8 535 aa18.18■□□□□ 0.5
CLN3-213ENST00000565047 PRRT2Q7Z6L0 340 aaPredicted RBP18.18■□□□□ 0.5
CLN3-213ENST00000565047 KIF1BPQ96EK5 621 aa18.18■□□□□ 0.5
CLN3-213ENST00000565047 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.18■□□□□ 0.5
CLN3-213ENST00000565047 PTPN22Q9Y2R2 807 aa18.18■□□□□ 0.5
CLN3-213ENST00000565047 RAB11FIP3O75154 756 aa18.17■□□□□ 0.5
CLN3-213ENST00000565047 BAG3O95817 575 aa18.17■□□□□ 0.5
CLN3-213ENST00000565047 SOX10P56693 466 aa18.17■□□□□ 0.5
CLN3-213ENST00000565047 CDK5RAP2Q96SN8 1893 aa18.17■□□□□ 0.5
CLN3-213ENST00000565047 FLT1P17948 1338 aa18.17■□□□□ 0.5
CLN3-213ENST00000565047 TNRC18O15417 2968 aaPredicted RBP18.17■□□□□ 0.5
CLN3-213ENST00000565047 FOCADQ5VW36 1801 aa18.16■□□□□ 0.5
CLN3-213ENST00000565047 DOCK1Q14185 1865 aa18.16■□□□□ 0.5
CLN3-213ENST00000565047 PDHXO00330 501 aa18.16■□□□□ 0.5
CLN3-213ENST00000565047 HMMRO75330 724 aa18.16■□□□□ 0.5
CLN3-213ENST00000565047 PLCG2P16885 1265 aa18.16■□□□□ 0.5
CLN3-213ENST00000565047 CTGFP29279 349 aa18.16■□□□□ 0.5
CLN3-213ENST00000565047 DYNLL1P63167 89 aaKnown RBP18.16■□□□□ 0.5
CLN3-213ENST00000565047 MLLT1Q03111 559 aaPredicted RBP18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms