RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 WDR18Q9BV38 432 aa7.36□□□□□ -1.23
VPS35-205ENST00000563984 CEP44Q9C0F1 390 aa7.36□□□□□ -1.23
VPS35-205ENST00000563984 C12orf49Q9H741 205 aa7.36□□□□□ -1.23
VPS35-205ENST00000563984 FAM8A1Q9UBU6 413 aa7.36□□□□□ -1.23
VPS35-205ENST00000563984 LEMD3Q9Y2U8 911 aa7.36□□□□□ -1.23
VPS35-205ENST00000563984 ACTL7BQ9Y614 415 aa7.36□□□□□ -1.23
VPS35-205ENST00000563984 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.35□□□□□ -1.23
VPS35-205ENST00000563984 FAM95CA0A1B0GW59 222 aa7.35□□□□□ -1.23
VPS35-205ENST00000563984 PAPLNO95428 1278 aa7.35□□□□□ -1.23
VPS35-205ENST00000563984 SLFN14P0C7P3 912 aa7.35□□□□□ -1.23
VPS35-205ENST00000563984 RAB6AP20340 208 aa7.35□□□□□ -1.23
VPS35-205ENST00000563984 NME2P22392 152 aa7.35□□□□□ -1.23
VPS35-205ENST00000563984 ARNTP27540 789 aa7.35□□□□□ -1.23
VPS35-205ENST00000563984 ZNF326Q5BKZ1 582 aaKnown RBP7.35□□□□□ -1.23
VPS35-205ENST00000563984 PAOXQ6QHF9 649 aa7.35□□□□□ -1.23
VPS35-205ENST00000563984 DYMQ7RTS9 669 aa7.35□□□□□ -1.23
VPS35-205ENST00000563984 NECAB3Q96P71 396 aaPredicted RBP7.35□□□□□ -1.23
VPS35-205ENST00000563984 EMILIN2Q9BXX0 1053 aa7.35□□□□□ -1.23
VPS35-205ENST00000563984 GSX1Q9H4S2 264 aaPredicted RBP7.35□□□□□ -1.23
VPS35-205ENST00000563984 CCDC86Q9H6F5 360 aaKnown RBP7.35□□□□□ -1.23
VPS35-205ENST00000563984 ATG3Q9NT62 314 aa7.35□□□□□ -1.23
VPS35-205ENST00000563984 ADMP35318 185 aa7.34□□□□□ -1.23
VPS35-205ENST00000563984 EAPPQ56P03 285 aaPredicted RBP7.34□□□□□ -1.23
VPS35-205ENST00000563984 PDZD3Q86UT5 571 aa7.34□□□□□ -1.23
VPS35-205ENST00000563984 GIMAP7Q8NHV1 300 aa7.34□□□□□ -1.23
VPS35-205ENST00000563984 OSBPL1AQ9BXW6 950 aa7.34□□□□□ -1.23
VPS35-205ENST00000563984 ZC3H12CQ9C0D7 883 aaKnown RBP7.34□□□□□ -1.23
VPS35-205ENST00000563984 AP4E1Q9UPM8 1137 aa7.34□□□□□ -1.23
VPS35-205ENST00000563984 SAMM50Q9Y512 469 aa7.34□□□□□ -1.23
VPS35-205ENST00000563984 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.34□□□□□ -1.23
VPS35-205ENST00000563984 ZNF865P0CJ78 1059 aaPredicted RBP7.33□□□□□ -1.24
VPS35-205ENST00000563984 LIG1P18858 919 aa7.33□□□□□ -1.24
VPS35-205ENST00000563984 GNA15P30679 374 aa7.33□□□□□ -1.24
VPS35-205ENST00000563984 MAP7Q14244 749 aa7.33□□□□□ -1.24
VPS35-205ENST00000563984 KIF4BQ2VIQ3 1234 aa7.33□□□□□ -1.24
VPS35-205ENST00000563984 DNAJC14Q6Y2X3 702 aaPredicted RBP7.33□□□□□ -1.24
VPS35-205ENST00000563984 SULF2Q8IWU5 870 aa7.33□□□□□ -1.24
VPS35-205ENST00000563984 TBC1D32Q96NH3 1257 aa7.33□□□□□ -1.24
VPS35-205ENST00000563984 ZNF862O60290 1169 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 USP17L7P0C7H9 530 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 ERCC3P19447 782 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 EIF4BP23588 611 aaKnown RBP7.32□□□□□ -1.24
VPS35-205ENST00000563984 ASPAP45381 313 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 ZNF252P-AS1Q0IIN9 211 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 TPTE2Q6XPS3 522 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 KCNB2Q92953 911 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 WDR89Q96FK6 387 aaPredicted RBP7.32□□□□□ -1.24
VPS35-205ENST00000563984 ATXN3LQ9H3M9 355 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 ACSS3Q9H6R3 686 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 LGR6Q9HBX8 967 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 FAM105AQ9NUU6 356 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 CRIM1Q9NZV1 1036 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 CARMIL2Q6F5E8 1435 aa7.32□□□□□ -1.24
VPS35-205ENST00000563984 FAM170BA6NMN3 283 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 ENC1O14682 589 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 TMPRSS2O15393 492 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 NFICP08651 508 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 ID3Q02535 119 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 CPSF6Q16630 551 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS35-205ENST00000563984 NPAS4Q8IUM7 802 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 STK35Q8TDR2 534 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 KRTAP9-3Q9BYQ3 159 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 GZF1Q9H116 711 aaPredicted RBP7.31□□□□□ -1.24
VPS35-205ENST00000563984 SEMA6CQ9H3T2 930 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 PAK6Q9NQU5 681 aaPredicted RBP7.31□□□□□ -1.24
VPS35-205ENST00000563984 PRKAG2Q9UGJ0 569 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 PPP1R9AQ9ULJ8 1098 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 AK5Q9Y6K8 562 aa7.31□□□□□ -1.24
VPS35-205ENST00000563984 BMP6P22004 513 aa7.3□□□□□ -1.24
VPS35-205ENST00000563984 LRRC14Q15048 493 aa7.3□□□□□ -1.24
VPS35-205ENST00000563984 CCDC27Q2M243 656 aa7.3□□□□□ -1.24
VPS35-205ENST00000563984 SCARA3Q6AZY7 606 aa7.3□□□□□ -1.24
VPS35-205ENST00000563984 DUSP9Q99956 384 aaKnown RBP7.3□□□□□ -1.24
VPS35-205ENST00000563984 CBX8Q9HC52 389 aa7.3□□□□□ -1.24
VPS35-205ENST00000563984 CACNA2D2Q9NY47 1150 aa7.3□□□□□ -1.24
VPS35-205ENST00000563984 CCDC9Q9Y3X0 531 aaKnown RBP7.3□□□□□ -1.24
VPS35-205ENST00000563984 PCDHGC5Q9Y5F6 944 aa7.3□□□□□ -1.24
VPS35-205ENST00000563984 MAP1SQ66K74 1059 aaPredicted RBP7.29□□□□□ -1.24
VPS35-205ENST00000563984 SV2BQ7L1I2 683 aa7.29□□□□□ -1.24
VPS35-205ENST00000563984 ZAR1Q86SH2 424 aa7.29□□□□□ -1.24
VPS35-205ENST00000563984 DHX37Q8IY37 1157 aaKnown RBP7.29□□□□□ -1.24
VPS35-205ENST00000563984 FANCD2OSQ96PS1 177 aa7.29□□□□□ -1.24
VPS35-205ENST00000563984 METTL22Q9BUU2 404 aaPredicted RBP7.29□□□□□ -1.24
VPS35-205ENST00000563984 BSDC1Q9NW68 430 aaPredicted RBP7.29□□□□□ -1.24
VPS35-205ENST00000563984 BCCIPQ9P287 314 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS35-205ENST00000563984 CYP8B1Q9UNU6 501 aa7.29□□□□□ -1.24
VPS35-205ENST00000563984 DYNC1LI2O43237 492 aaPredicted RBP7.28□□□□□ -1.24
VPS35-205ENST00000563984 FBXO24O75426 580 aa7.28□□□□□ -1.24
VPS35-205ENST00000563984 FARP2O94887 1054 aaPredicted RBP7.28□□□□□ -1.24
VPS35-205ENST00000563984 TRIM37O94972 964 aa7.28□□□□□ -1.24
VPS35-205ENST00000563984 AGBL5Q8NDL9 886 aa7.28□□□□□ -1.24
VPS35-205ENST00000563984 GPBAR1Q8TDU6 330 aa7.28□□□□□ -1.24
VPS35-205ENST00000563984 PIDD1Q9HB75 910 aa7.28□□□□□ -1.24
VPS35-205ENST00000563984 DISC1Q9NRI5 854 aa7.28□□□□□ -1.24
VPS35-205ENST00000563984 DAGLAQ9Y4D2 1042 aa7.28□□□□□ -1.24
VPS35-205ENST00000563984 CYP26A1O43174 497 aa7.27□□□□□ -1.25
VPS35-205ENST00000563984 PAGE1O75459 146 aa7.27□□□□□ -1.25
VPS35-205ENST00000563984 KRTAP19-4Q3LI73 84 aa7.27□□□□□ -1.25
VPS35-205ENST00000563984 LLGL2Q6P1M3 1020 aa7.27□□□□□ -1.25
VPS35-205ENST00000563984 SEZ6L2Q6UXD5 910 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms