RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 HSPD1P10809 573 aaKnown RBP10.61□□□□□ -0.71
VPS39-207ENST00000563692 GYG1P46976 350 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 ZNF157P51786 506 aaPredicted RBP10.61□□□□□ -0.71
VPS39-207ENST00000563692 RBM5P52756 815 aaKnown RBP eCLIP10.61□□□□□ -0.71
VPS39-207ENST00000563692 LBX1P52954 281 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 RASGRF1Q13972 1273 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 TMED8Q6PL24 325 aaPredicted RBP10.61□□□□□ -0.71
VPS39-207ENST00000563692 BLOC1S2Q6QNY1 142 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 DLK2Q6UY11 383 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 CCDC129Q6ZRS4 1044 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 OSBP2Q969R2 916 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 UPF3BQ9BZI7 483 aaKnown RBP10.61□□□□□ -0.71
VPS39-207ENST00000563692 PIH1D3Q9NQM4 214 aaKnown RBP10.61□□□□□ -0.71
VPS39-207ENST00000563692 LRP2BPQ9P2M1 347 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 LIMCH1Q9UPQ0 1083 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 MAST3O60307 1309 aa10.6□□□□□ -0.71
VPS39-207ENST00000563692 IRS2Q9Y4H2 1338 aa10.6□□□□□ -0.71
VPS39-207ENST00000563692 NUCB2P80303 420 aa10.6□□□□□ -0.71
VPS39-207ENST00000563692 MFSD14BQ5SR56 506 aa10.6□□□□□ -0.71
VPS39-207ENST00000563692 PI16Q6UXB8 463 aa10.6□□□□□ -0.71
VPS39-207ENST00000563692 FBXO33Q7Z6M2 555 aa10.6□□□□□ -0.71
VPS39-207ENST00000563692 TDRD7Q8NHU6 1098 aaKnown RBP10.6□□□□□ -0.71
VPS39-207ENST00000563692 INTS4Q96HW7 963 aaKnown RBP10.6□□□□□ -0.71
VPS39-207ENST00000563692 TMX3Q96JJ7 454 aa10.6□□□□□ -0.71
VPS39-207ENST00000563692 FAM84BQ96KN1 310 aaPredicted RBP10.6□□□□□ -0.71
VPS39-207ENST00000563692 NEK1Q96PY6 1258 aa10.6□□□□□ -0.71
VPS39-207ENST00000563692 ALDH8A1Q9H2A2 487 aaPredicted RBP10.6□□□□□ -0.71
VPS39-207ENST00000563692 JAG2Q9Y219 1238 aa10.6□□□□□ -0.71
VPS39-207ENST00000563692 ZNF532Q9HCE3 1301 aa10.59□□□□□ -0.71
VPS39-207ENST00000563692 M0R2C6 588 aa10.59□□□□□ -0.71
VPS39-207ENST00000563692 HSPA8P11142 646 aaKnown RBP10.59□□□□□ -0.71
VPS39-207ENST00000563692 PDE6AP16499 860 aa10.59□□□□□ -0.71
VPS39-207ENST00000563692 GNAT2P19087 354 aa10.59□□□□□ -0.71
VPS39-207ENST00000563692 IMMTQ16891 758 aaKnown RBP10.59□□□□□ -0.71
VPS39-207ENST00000563692 CFAP100Q494V2 611 aa10.59□□□□□ -0.71
VPS39-207ENST00000563692 ARMC9Q7Z3E5 817 aa10.59□□□□□ -0.71
VPS39-207ENST00000563692 TBC1D22AQ8WUA7 517 aa10.59□□□□□ -0.71
VPS39-207ENST00000563692 PUS7LQ9H0K6 701 aaKnown RBP10.59□□□□□ -0.71
VPS39-207ENST00000563692 PDS5AQ29RF7 1337 aaKnown RBP10.58□□□□□ -0.71
VPS39-207ENST00000563692 FAM205AQ6ZU69 1335 aa10.58□□□□□ -0.71
VPS39-207ENST00000563692 PSME4Q14997 1843 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 PATL2C9JE40 543 aaKnown RBP10.58□□□□□ -0.72
VPS39-207ENST00000563692 ZNF213O14771 459 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 GPAA1O43292 621 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 CHGBP05060 677 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 APPP05067 770 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 CYP21A2P08686 494 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 RPS6KB1P23443 525 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 AK2P54819 239 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 CHAF1AQ13111 956 aaPredicted RBP10.58□□□□□ -0.72
VPS39-207ENST00000563692 CUL4AQ13619 759 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 NBR1Q14596 966 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 ADCK5Q3MIX3 580 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 SPTY2D1Q68D10 685 aaPredicted RBP10.58□□□□□ -0.72
VPS39-207ENST00000563692 ZGPATQ8N5A5 531 aaKnown RBP10.58□□□□□ -0.72
VPS39-207ENST00000563692 CERS5Q8N5B7 392 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 MAGEB6Q8N7X4 407 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 MTMR14Q8NCE2 650 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 CHMP4CQ96CF2 233 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 TTC14Q96N46 770 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 NACAP1Q9BZK3 213 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 VEZTQ9HBM0 779 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 SH2B1Q9NRF2 756 aaPredicted RBP10.58□□□□□ -0.72
VPS39-207ENST00000563692 FOXD4L1Q9NU39 408 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 RAI14Q9P0K7 980 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 ABCF2Q9UG63 623 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 TTF2Q9UNY4 1162 aaKnown RBP10.58□□□□□ -0.72
VPS39-207ENST00000563692 SCAF8Q9UPN6 1271 aaKnown RBP10.58□□□□□ -0.72
VPS39-207ENST00000563692 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.58□□□□□ -0.72
VPS39-207ENST00000563692 PPP2R3BQ9Y5P8 575 aa10.58□□□□□ -0.72
VPS39-207ENST00000563692 SPDYE2BA6NHP3 402 aa10.57□□□□□ -0.72
VPS39-207ENST00000563692 SLC10A3P09131 477 aa10.57□□□□□ -0.72
VPS39-207ENST00000563692 SPDYE6P0CI01 402 aa10.57□□□□□ -0.72
VPS39-207ENST00000563692 DDIT3P35638 169 aa10.57□□□□□ -0.72
VPS39-207ENST00000563692 FGD1P98174 961 aa10.57□□□□□ -0.72
VPS39-207ENST00000563692 TNFAIP1Q13829 316 aa10.57□□□□□ -0.72
VPS39-207ENST00000563692 NFKBIBQ15653 356 aa10.57□□□□□ -0.72
VPS39-207ENST00000563692 SLFNL1Q499Z3 407 aa10.57□□□□□ -0.72
VPS39-207ENST00000563692 PRAMEF18Q5VWM3 479 aa10.57□□□□□ -0.72
VPS39-207ENST00000563692 REM2Q8IYK8 340 aaPredicted RBP10.57□□□□□ -0.72
VPS39-207ENST00000563692 ZBED3Q96IU2 234 aaPredicted RBP10.57□□□□□ -0.72
VPS39-207ENST00000563692 DEFB129Q9H1M3 183 aa10.57□□□□□ -0.72
VPS39-207ENST00000563692 SERPINA10Q9UK55 444 aa10.57□□□□□ -0.72
VPS39-207ENST00000563692 IQSEC3Q9UPP2 1182 aaPredicted RBP10.57□□□□□ -0.72
VPS39-207ENST00000563692 RPAP1Q9BWH6 1393 aaPredicted RBP10.56□□□□□ -0.72
VPS39-207ENST00000563692 TCRBV5S4A2TA0A5A2 114 aa10.56□□□□□ -0.72
VPS39-207ENST00000563692 CLRN2A0PK11 232 aa10.56□□□□□ -0.72
VPS39-207ENST00000563692 UBE2Q2LH0YL09 131 aa10.56□□□□□ -0.72
VPS39-207ENST00000563692 PPP1R12BO60237 982 aaPredicted RBP10.56□□□□□ -0.72
VPS39-207ENST00000563692 CAPN15O75808 1086 aa10.56□□□□□ -0.72
VPS39-207ENST00000563692 FGAP02671 866 aa10.56□□□□□ -0.72
VPS39-207ENST00000563692 PDIA4P13667 645 aaKnown RBP10.56□□□□□ -0.72
VPS39-207ENST00000563692 CYP7A1P22680 504 aa10.56□□□□□ -0.72
VPS39-207ENST00000563692 KIF23Q02241 960 aaPredicted RBP10.56□□□□□ -0.72
VPS39-207ENST00000563692 TRDNQ13061 729 aa10.56□□□□□ -0.72
VPS39-207ENST00000563692 ALX1Q15699 326 aa10.56□□□□□ -0.72
VPS39-207ENST00000563692 SUPT20HL1Q3ZLR7 823 aa10.56□□□□□ -0.72
VPS39-207ENST00000563692 NOL8Q76FK4 1167 aaKnown RBP10.56□□□□□ -0.72
VPS39-207ENST00000563692 DHX32Q7L7V1 743 aaKnown RBP10.56□□□□□ -0.72
VPS39-207ENST00000563692 WDR66Q8TBY9 1149 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms