RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 KIF1BPQ96EK5 621 aa19.16■□□□□ 0.66
VPS39-203ENST00000561797 PIH1D3Q9NQM4 214 aaKnown RBP19.16■□□□□ 0.66
VPS39-203ENST00000561797 SNCAIPQ9Y6H5 919 aa19.16■□□□□ 0.66
VPS39-203ENST00000561797 RFX7Q2KHR2 1363 aa19.16■□□□□ 0.66
VPS39-203ENST00000561797 IGF2BP3O00425 579 aaKnown RBP eCLIP19.15■□□□□ 0.66
VPS39-203ENST00000561797 CLASRPQ8N2M8 674 aaKnown RBP19.15■□□□□ 0.66
VPS39-203ENST00000561797 ABHD8Q96I13 439 aa19.15■□□□□ 0.66
VPS39-203ENST00000561797 NOL10Q9BSC4 688 aaKnown RBP19.15■□□□□ 0.66
VPS39-203ENST00000561797 MCOLN1Q9GZU1 580 aa19.15■□□□□ 0.66
VPS39-203ENST00000561797 R3HDMLQ9H3Y0 253 aa19.15■□□□□ 0.66
VPS39-203ENST00000561797 NDUFB9Q9Y6M9 179 aa19.15■□□□□ 0.66
VPS39-203ENST00000561797 ATAD5Q96QE3 1844 aa19.15■□□□□ 0.66
VPS39-203ENST00000561797 DOCK1Q14185 1865 aa19.14■□□□□ 0.65
VPS39-203ENST00000561797 MYH1P12882 1939 aa19.14■□□□□ 0.65
VPS39-203ENST00000561797 DDTLA6NHG4 134 aaPredicted RBP19.14■□□□□ 0.65
VPS39-203ENST00000561797 ALDH1A1P00352 501 aa19.14■□□□□ 0.65
VPS39-203ENST00000561797 SH3BP5LQ7L8J4 393 aa19.14■□□□□ 0.65
VPS39-203ENST00000561797 SPDYE5A6NIY4 337 aa19.13■□□□□ 0.65
VPS39-203ENST00000561797 GPR25O00155 361 aa19.13■□□□□ 0.65
VPS39-203ENST00000561797 RAB11FIP3O75154 756 aa19.13■□□□□ 0.65
VPS39-203ENST00000561797 OTUD7BQ6GQQ9 843 aa19.13■□□□□ 0.65
VPS39-203ENST00000561797 ERO1BQ86YB8 467 aa19.13■□□□□ 0.65
VPS39-203ENST00000561797 TEX11Q8IYF3 940 aa19.13■□□□□ 0.65
VPS39-203ENST00000561797 ZNF296Q8WUU4 475 aaPredicted RBP19.13■□□□□ 0.65
VPS39-203ENST00000561797 MS4A4AQ96JQ5 239 aa19.13■□□□□ 0.65
VPS39-203ENST00000561797 PTPN18Q99952 460 aa19.13■□□□□ 0.65
VPS39-203ENST00000561797 AATFQ9NY61 560 aaKnown RBP eCLIP19.13■□□□□ 0.65
VPS39-203ENST00000561797 ZNF112Q9UJU3 913 aa19.13■□□□□ 0.65
VPS39-203ENST00000561797 CCL15-CCL14A0A0B4J2E2 113 aa19.12■□□□□ 0.65
VPS39-203ENST00000561797 TESPA1A2RU30 521 aaPredicted RBP19.12■□□□□ 0.65
VPS39-203ENST00000561797 IDH1O75874 414 aaKnown RBP19.12■□□□□ 0.65
VPS39-203ENST00000561797 IFIT2P09913 472 aaKnown RBP19.12■□□□□ 0.65
VPS39-203ENST00000561797 SLURP2P0DP57 97 aa19.12■□□□□ 0.65
VPS39-203ENST00000561797 GTF2A2P52657 109 aa19.12■□□□□ 0.65
VPS39-203ENST00000561797 CCL15Q16663 113 aa19.12■□□□□ 0.65
VPS39-203ENST00000561797 ADGRA1Q86SQ6 560 aa19.12■□□□□ 0.65
VPS39-203ENST00000561797 SH3RF3Q8TEJ3 882 aaPredicted RBP19.12■□□□□ 0.65
VPS39-203ENST00000561797 ANTXR1Q9H6X2 564 aa19.12■□□□□ 0.65
VPS39-203ENST00000561797 MYH7P12883 1935 aa19.12■□□□□ 0.65
VPS39-203ENST00000561797 PHIPQ8WWQ0 1821 aa19.11■□□□□ 0.65
VPS39-203ENST00000561797 BAG3O95817 575 aa19.11■□□□□ 0.65
VPS39-203ENST00000561797 MAP4K4O95819 1239 aaPredicted RBP19.11■□□□□ 0.65
VPS39-203ENST00000561797 BRI3BPQ8WY22 251 aa19.11■□□□□ 0.65
VPS39-203ENST00000561797 CFHR5Q9BXR6 569 aa19.11■□□□□ 0.65
VPS39-203ENST00000561797 ATRNL1Q5VV63 1379 aa19.1■□□□□ 0.65
VPS39-203ENST00000561797 SIPA1L1O43166 1804 aa19.1■□□□□ 0.65
VPS39-203ENST00000561797 IRF6O14896 467 aa19.1■□□□□ 0.65
VPS39-203ENST00000561797 CYP7A1P22680 504 aa19.1■□□□□ 0.65
VPS39-203ENST00000561797 PTPRFP10586 1907 aa19.1■□□□□ 0.65
VPS39-203ENST00000561797 CCDC85CA6NKD9 419 aa19.09■□□□□ 0.65
VPS39-203ENST00000561797 PHF20L1A8MW92 1017 aa19.09■□□□□ 0.65
VPS39-203ENST00000561797 FKTNO75072 461 aa19.09■□□□□ 0.65
VPS39-203ENST00000561797 NPM3O75607 178 aaKnown RBP19.09■□□□□ 0.65
VPS39-203ENST00000561797 RRP1P56182 461 aaKnown RBP19.09■□□□□ 0.65
VPS39-203ENST00000561797 PPATQ06203 517 aa19.09■□□□□ 0.65
VPS39-203ENST00000561797 PPIL2Q13356 520 aa19.09■□□□□ 0.65
VPS39-203ENST00000561797 CTU1Q7Z7A3 348 aaKnown RBP19.09■□□□□ 0.65
VPS39-203ENST00000561797 OSBPL5Q9H0X9 879 aaPredicted RBP19.09■□□□□ 0.65
VPS39-203ENST00000561797 FAM196BA6NMK8 535 aa19.08■□□□□ 0.64
VPS39-203ENST00000561797 SMARCA5O60264 1052 aaPredicted RBP19.08■□□□□ 0.64
VPS39-203ENST00000561797 CETPP11597 493 aa19.08■□□□□ 0.64
VPS39-203ENST00000561797 PLCG2P16885 1265 aa19.08■□□□□ 0.64
VPS39-203ENST00000561797 PPP4CP60510 307 aa19.08■□□□□ 0.64
VPS39-203ENST00000561797 DYNLL1P63167 89 aaKnown RBP19.08■□□□□ 0.64
VPS39-203ENST00000561797 CRHR2Q13324 411 aa19.08■□□□□ 0.64
VPS39-203ENST00000561797 SNAPC2Q13487 334 aa19.08■□□□□ 0.64
VPS39-203ENST00000561797 NOM1Q5C9Z4 860 aaKnown RBP19.08■□□□□ 0.64
VPS39-203ENST00000561797 NOL9Q5SY16 702 aaKnown RBP19.08■□□□□ 0.64
VPS39-203ENST00000561797 MAGEB6Q8N7X4 407 aa19.08■□□□□ 0.64
VPS39-203ENST00000561797 TGFBRAP1Q8WUH2 860 aa19.08■□□□□ 0.64
VPS39-203ENST00000561797 DNAJC2Q99543 621 aaKnown RBP19.08■□□□□ 0.64
VPS39-203ENST00000561797 IGSF3O75054 1194 aa19.07■□□□□ 0.64
VPS39-203ENST00000561797 MAP3K10Q02779 954 aa19.07■□□□□ 0.64
VPS39-203ENST00000561797 MAP3K12Q12852 859 aa19.07■□□□□ 0.64
VPS39-203ENST00000561797 TAF1CQ15572 869 aaPredicted RBP19.07■□□□□ 0.64
VPS39-203ENST00000561797 MAPKAPK5Q8IW41 473 aa19.07■□□□□ 0.64
VPS39-203ENST00000561797 FAM43AQ8N2R8 423 aa19.07■□□□□ 0.64
VPS39-203ENST00000561797 LRRCC1Q9C099 1032 aa19.07■□□□□ 0.64
VPS39-203ENST00000561797 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.07■□□□□ 0.64
VPS39-203ENST00000561797 COL2A1P02458 1487 aaPredicted RBP19.06■□□□□ 0.64
VPS39-203ENST00000561797 SCYL3Q8IZE3 742 aa19.06■□□□□ 0.64
VPS39-203ENST00000561797 MIGA1Q8NAN2 632 aa19.06■□□□□ 0.64
VPS39-203ENST00000561797 PICK1Q9NRD5 415 aa19.06■□□□□ 0.64
VPS39-203ENST00000561797 GOLIM4O00461 696 aa19.05■□□□□ 0.64
VPS39-203ENST00000561797 TTF1Q15361 905 aaPredicted RBP19.05■□□□□ 0.64
VPS39-203ENST00000561797 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.05■□□□□ 0.64
VPS39-203ENST00000561797 NAV1Q8NEY1 1877 aa19.05■□□□□ 0.64
VPS39-203ENST00000561797 BTBD19C9JJ37 291 aa19.04■□□□□ 0.64
VPS39-203ENST00000561797 TBC1D12O60347 775 aa19.04■□□□□ 0.64
VPS39-203ENST00000561797 CTNND1O60716 968 aaKnown RBP19.04■□□□□ 0.64
VPS39-203ENST00000561797 EDC3Q96F86 508 aaKnown RBP19.04■□□□□ 0.64
VPS39-203ENST00000561797 BOLA2Q9H3K6 86 aa19.04■□□□□ 0.64
VPS39-203ENST00000561797 ZFYVE28Q9HCC9 887 aa19.04■□□□□ 0.64
VPS39-203ENST00000561797 SAP30BPQ9UHR5 308 aaKnown RBP19.04■□□□□ 0.64
VPS39-203ENST00000561797 FLT1P17948 1338 aa19.03■□□□□ 0.64
VPS39-203ENST00000561797 ZSWIM8A7E2V4 1837 aa19.03■□□□□ 0.64
VPS39-203ENST00000561797 PTPRAP18433 802 aa19.03■□□□□ 0.64
VPS39-203ENST00000561797 CRBNQ96SW2 442 aa19.03■□□□□ 0.64
VPS39-203ENST00000561797 DCTPP1Q9H773 170 aa19.03■□□□□ 0.64
VPS39-203ENST00000561797 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms