RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ENTPD3O75355 529 aa26.23■■□□□ 1.79
SNX1-210ENST00000560260 TNNI2P48788 182 aa26.23■■□□□ 1.79
SNX1-210ENST00000560260 BMP2KLQ5H9B9 411 aa26.23■■□□□ 1.79
SNX1-210ENST00000560260 NBPF12Q5TAG4 269 aaPredicted RBP26.23■■□□□ 1.79
SNX1-210ENST00000560260 CCDC129Q6ZRS4 1044 aa26.23■■□□□ 1.79
SNX1-210ENST00000560260 AIDAQ96BJ3 306 aa26.23■■□□□ 1.79
SNX1-210ENST00000560260 SIPA1L1O43166 1804 aa26.23■■□□□ 1.79
SNX1-210ENST00000560260 GPAA1O43292 621 aa26.22■■□□□ 1.79
SNX1-210ENST00000560260 NPM3O75607 178 aaKnown RBP26.22■■□□□ 1.79
SNX1-210ENST00000560260 TICAM2Q86XR7 235 aa26.22■■□□□ 1.79
SNX1-210ENST00000560260 CERS3Q8IU89 383 aa26.22■■□□□ 1.79
SNX1-210ENST00000560260 SDR42E1Q8WUS8 393 aa26.22■■□□□ 1.79
SNX1-210ENST00000560260 STRBPQ96SI9 672 aaKnown RBP26.22■■□□□ 1.79
SNX1-210ENST00000560260 OSBPL5Q9H0X9 879 aaPredicted RBP26.22■■□□□ 1.79
SNX1-210ENST00000560260 ZNF408Q9H9D4 720 aa26.21■■□□□ 1.79
SNX1-210ENST00000560260 COL2A1P02458 1487 aaPredicted RBP26.21■■□□□ 1.79
SNX1-210ENST00000560260 DDTLA6NHG4 134 aaPredicted RBP26.2■■□□□ 1.79
SNX1-210ENST00000560260 C1QTNF8P60827 252 aa26.2■■□□□ 1.79
SNX1-210ENST00000560260 CST9Q5W186 159 aa26.2■■□□□ 1.79
SNX1-210ENST00000560260 CRNKL1Q9BZJ0 848 aaKnown RBP26.2■■□□□ 1.79
SNX1-210ENST00000560260 IL25Q9H293 177 aa26.2■■□□□ 1.79
SNX1-210ENST00000560260 MKRN1Q9UHC7 482 aaKnown RBP26.2■■□□□ 1.79
SNX1-210ENST00000560260 ATRNL1Q5VV63 1379 aa26.2■■□□□ 1.78
SNX1-210ENST00000560260 CELF2O95319 508 aaKnown RBP26.19■■□□□ 1.78
SNX1-210ENST00000560260 ZNF589Q86UQ0 364 aaPredicted RBP26.19■■□□□ 1.78
SNX1-210ENST00000560260 HELLSQ9NRZ9 838 aa26.19■■□□□ 1.78
SNX1-210ENST00000560260 FZD1Q9UP38 647 aa26.19■■□□□ 1.78
SNX1-210ENST00000560260 MYH1P12882 1939 aa26.19■■□□□ 1.78
SNX1-210ENST00000560260 SLURP2P0DP57 97 aa26.18■■□□□ 1.78
SNX1-210ENST00000560260 USP5P45974 858 aa26.18■■□□□ 1.78
SNX1-210ENST00000560260 DIAPH3Q9NSV4 1193 aa26.18■■□□□ 1.78
SNX1-210ENST00000560260 SAP30BPQ9UHR5 308 aaKnown RBP26.18■■□□□ 1.78
SNX1-210ENST00000560260 PAPPA2Q9BXP8 1791 aa26.18■■□□□ 1.78
SNX1-210ENST00000560260 BAZ2AQ9UIF9 1905 aaKnown RBP26.18■■□□□ 1.78
SNX1-210ENST00000560260 FOXP2O15409 715 aa26.17■■□□□ 1.78
SNX1-210ENST00000560260 CHMLP26374 656 aa26.17■■□□□ 1.78
SNX1-210ENST00000560260 CWC27Q6UX04 472 aaKnown RBP26.17■■□□□ 1.78
SNX1-210ENST00000560260 EPB41L4AQ9HCS5 686 aaPredicted RBP26.17■■□□□ 1.78
SNX1-210ENST00000560260 DCP1AQ9NPI6 582 aaPredicted RBP26.17■■□□□ 1.78
SNX1-210ENST00000560260 SLC4A4Q9Y6R1 1079 aa26.17■■□□□ 1.78
SNX1-210ENST00000560260 HIP1O00291 1037 aa26.15■■□□□ 1.78
SNX1-210ENST00000560260 EVX2Q03828 476 aa26.15■■□□□ 1.78
SNX1-210ENST00000560260 SLC4A8Q2Y0W8 1093 aa26.15■■□□□ 1.78
SNX1-210ENST00000560260 MCMDC2Q4G0Z9 681 aa26.15■■□□□ 1.78
SNX1-210ENST00000560260 MOB2Q70IA6 237 aa26.15■■□□□ 1.78
SNX1-210ENST00000560260 OTOFQ9HC10 1997 aa26.15■■□□□ 1.78
SNX1-210ENST00000560260 GSG1L2A8MUP6 293 aa26.14■■□□□ 1.78
SNX1-210ENST00000560260 VPS53Q5VIR6 699 aa26.14■■□□□ 1.78
SNX1-210ENST00000560260 CSRNP1Q96S65 589 aa26.14■■□□□ 1.78
SNX1-210ENST00000560260 PALD1Q9ULE6 856 aa26.14■■□□□ 1.78
SNX1-210ENST00000560260 APLP1P51693 650 aa26.14■■□□□ 1.77
SNX1-210ENST00000560260 PRKG1Q13976 671 aa26.14■■□□□ 1.77
SNX1-210ENST00000560260 ZSCAN29Q8IWY8 852 aaPredicted RBP26.14■■□□□ 1.77
SNX1-210ENST00000560260 ATP8A2Q9NTI2 1148 aa26.14■■□□□ 1.77
SNX1-210ENST00000560260 CCDC171Q6TFL3 1326 aa26.13■■□□□ 1.77
SNX1-210ENST00000560260 CYP2D6P10635 497 aa26.13■■□□□ 1.77
SNX1-210ENST00000560260 SUPT20HL1Q3ZLR7 823 aa26.13■■□□□ 1.77
SNX1-210ENST00000560260 GBA2Q9HCG7 927 aaPredicted RBP26.13■■□□□ 1.77
SNX1-210ENST00000560260 SMIM22K7EJ46 135 aa26.12■■□□□ 1.77
SNX1-210ENST00000560260 MIGA2Q7L4E1 593 aa26.12■■□□□ 1.77
SNX1-210ENST00000560260 LAMB1P07942 1786 aa26.11■■□□□ 1.77
SNX1-210ENST00000560260 TMEM88BA6NKF7 163 aa26.11■■□□□ 1.77
SNX1-210ENST00000560260 FAM196BA6NMK8 535 aa26.11■■□□□ 1.77
SNX1-210ENST00000560260 GNAT2P19087 354 aa26.11■■□□□ 1.77
SNX1-210ENST00000560260 NF2P35240 595 aa26.11■■□□□ 1.77
SNX1-210ENST00000560260 HTRA3P83110 453 aa26.11■■□□□ 1.77
SNX1-210ENST00000560260 MCM9Q9NXL9 1143 aa26.11■■□□□ 1.77
SNX1-210ENST00000560260 RAD50Q92878 1312 aa26.1■■□□□ 1.77
SNX1-210ENST00000560260 CYP2D7A0A087X1C5 515 aa26.1■■□□□ 1.77
SNX1-210ENST00000560260 USP2O75604 605 aaPredicted RBP26.1■■□□□ 1.77
SNX1-210ENST00000560260 PLCD1P51178 756 aa26.1■■□□□ 1.77
SNX1-210ENST00000560260 DHX36Q9H2U1 1008 aaKnown RBP26.1■■□□□ 1.77
SNX1-210ENST00000560260 DNAJC18Q9H819 358 aa26.1■■□□□ 1.77
SNX1-210ENST00000560260 PATL2C9JE40 543 aaKnown RBP26.09■■□□□ 1.77
SNX1-210ENST00000560260 ANGEL1Q9UNK9 670 aaKnown RBP26.09■■□□□ 1.77
SNX1-210ENST00000560260 UBE2Q2LH0YL09 131 aa26.08■■□□□ 1.77
SNX1-210ENST00000560260 SGSM2O43147 1006 aa26.08■■□□□ 1.77
SNX1-210ENST00000560260 HSPA6P17066 643 aa26.08■■□□□ 1.77
SNX1-210ENST00000560260 MAP3K10Q02779 954 aa26.08■■□□□ 1.77
SNX1-210ENST00000560260 TTLL12Q14166 644 aaPredicted RBP26.08■■□□□ 1.77
SNX1-210ENST00000560260 GIMAP6Q6P9H5 292 aa26.08■■□□□ 1.77
SNX1-210ENST00000560260 CTR9Q6PD62 1173 aa26.08■■□□□ 1.77
SNX1-210ENST00000560260 IFNL3Q8IZI9 196 aa26.08■■□□□ 1.77
SNX1-210ENST00000560260 CREBZFQ9NS37 354 aa26.08■■□□□ 1.77
SNX1-210ENST00000560260 TLL2Q9Y6L7 1015 aa26.08■■□□□ 1.77
SNX1-210ENST00000560260 USP17L12C9JPN9 530 aa26.07■■□□□ 1.76
SNX1-210ENST00000560260 USP17L21D6R901 530 aa26.07■■□□□ 1.76
SNX1-210ENST00000560260 CDC45O75419 566 aa26.07■■□□□ 1.76
SNX1-210ENST00000560260 HSPD1P10809 573 aaKnown RBP26.07■■□□□ 1.76
SNX1-210ENST00000560260 FKBP1BP68106 108 aa26.07■■□□□ 1.76
SNX1-210ENST00000560260 MAP3K11Q16584 847 aa26.07■■□□□ 1.76
SNX1-210ENST00000560260 METTL16Q86W50 562 aaKnown RBP26.07■■□□□ 1.76
SNX1-210ENST00000560260 C2orf69Q8N8R5 385 aa26.07■■□□□ 1.76
SNX1-210ENST00000560260 PI4KBQ9UBF8 816 aa26.07■■□□□ 1.76
SNX1-210ENST00000560260 PPP1R12BO60237 982 aaPredicted RBP26.06■■□□□ 1.76
SNX1-210ENST00000560260 APPP05067 770 aa26.06■■□□□ 1.76
SNX1-210ENST00000560260 POLR3DP05423 398 aaPredicted RBP26.06■■□□□ 1.76
SNX1-210ENST00000560260 DCAF15Q66K64 600 aa26.06■■□□□ 1.76
SNX1-210ENST00000560260 SAPCD2Q86UD0 394 aa26.06■■□□□ 1.76
SNX1-210ENST00000560260 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms