RNA–Protein interactions for RNA: ENST00000558894.5

SMAD3-209, Transcript of SMAD family member 3, humanhuman

TSL 5

Gene SMAD3, Length 797 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-209ENST00000558894 NSUN4Q96CB9 384 aaKnown RBP6.88□□□□□ -1.31
SMAD3-209ENST00000558894 WRNIP1Q96S55 665 aa6.88□□□□□ -1.31
SMAD3-209ENST00000558894 ZNF341Q9BYN7 854 aa6.88□□□□□ -1.31
SMAD3-209ENST00000558894 DDX4Q9NQI0 724 aaKnown RBP6.88□□□□□ -1.31
SMAD3-209ENST00000558894 USP40Q9NVE5 1235 aa6.88□□□□□ -1.31
SMAD3-209ENST00000558894 GNL3LQ9NVN8 582 aaKnown RBP6.88□□□□□ -1.31
SMAD3-209ENST00000558894 KCNH4Q9UQ05 1017 aa6.88□□□□□ -1.31
SMAD3-209ENST00000558894 HDAC5Q9UQL6 1122 aa6.88□□□□□ -1.31
SMAD3-209ENST00000558894 PTPN22Q9Y2R2 807 aa6.88□□□□□ -1.31
SMAD3-209ENST00000558894 DOCK3Q8IZD9 2030 aa6.88□□□□□ -1.31
SMAD3-209ENST00000558894 MROH7-TTC4A0A0A0MT08 1334 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 ENTPD3O75355 529 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 MCAMP43121 646 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 RGS3P49796 1198 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 HNRNPUQ00839 825 aaKnown RBP eCLIP6.87□□□□□ -1.312e-6■■■□□ 17.7
SMAD3-209ENST00000558894 SP3Q02447 781 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 DIEXFQ68CQ4 756 aaKnown RBP6.87□□□□□ -1.31
SMAD3-209ENST00000558894 GPAT2Q6NUI2 795 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 SPATA5Q8NB90 893 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 ARHGAP39Q9C0H5 1083 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 C1orf115Q9H7X2 142 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 GPR108Q9NPR9 543 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 TMOD2Q9NZR1 351 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 AKAP2Q9Y2D5 859 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 NOP58Q9Y2X3 529 aaKnown RBP6.87□□□□□ -1.31
SMAD3-209ENST00000558894 TRIM17Q9Y577 477 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 CSADQ9Y600 493 aa6.87□□□□□ -1.31
SMAD3-209ENST00000558894 COL6A3P12111 3177 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 MYH7P12883 1935 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 ZBED9Q6R2W3 1325 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 POTEFA5A3E0 1075 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 TLR2O60603 784 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 CETPP11597 493 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 BTDP43251 543 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 RRP1BQ14684 758 aaKnown RBP6.86□□□□□ -1.31
SMAD3-209ENST00000558894 MVPQ14764 893 aaKnown RBP6.86□□□□□ -1.31
SMAD3-209ENST00000558894 TAF1CQ15572 869 aaPredicted RBP6.86□□□□□ -1.31
SMAD3-209ENST00000558894 DCAF15Q66K64 600 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 OTUD7BQ6GQQ9 843 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 C17orf99Q6UX52 265 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 ADGRA1Q86SQ6 560 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 ZGPATQ8N5A5 531 aaKnown RBP6.86□□□□□ -1.31
SMAD3-209ENST00000558894 ARMC5Q96C12 935 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 HOOK2Q96ED9 719 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 ERO1AQ96HE7 468 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 ZNF512BQ96KM6 892 aaPredicted RBP6.86□□□□□ -1.31
SMAD3-209ENST00000558894 NEUROD6Q96NK8 337 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 DBNDD2Q9BQY9 259 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 ZCCHC17Q9NP64 241 aaKnown RBP6.86□□□□□ -1.31
SMAD3-209ENST00000558894 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.86□□□□□ -1.31
SMAD3-209ENST00000558894 ABCF2Q9UG63 623 aa6.86□□□□□ -1.31
SMAD3-209ENST00000558894 TBC1D12O60347 775 aa6.85□□□□□ -1.31
SMAD3-209ENST00000558894 CYP2E1P05181 493 aaPredicted RBP6.85□□□□□ -1.31
SMAD3-209ENST00000558894 PTPRAP18433 802 aa6.85□□□□□ -1.31
SMAD3-209ENST00000558894 JAG1P78504 1218 aa6.85□□□□□ -1.31
SMAD3-209ENST00000558894 LACTBP83111 547 aaPredicted RBP6.85□□□□□ -1.31
SMAD3-209ENST00000558894 SNAPC2Q13487 334 aa6.85□□□□□ -1.31
SMAD3-209ENST00000558894 TNNI3KQ59H18 835 aa6.85□□□□□ -1.31
SMAD3-209ENST00000558894 ANKRD23Q86SG2 305 aa6.85□□□□□ -1.31
SMAD3-209ENST00000558894 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.85□□□□□ -1.31
SMAD3-209ENST00000558894 EAF2Q96CJ1 260 aaPredicted RBP6.85□□□□□ -1.31
SMAD3-209ENST00000558894 ZFYVE28Q9HCC9 887 aa6.85□□□□□ -1.31
SMAD3-209ENST00000558894 TLR7Q9NYK1 1049 aaKnown RBP6.85□□□□□ -1.31
SMAD3-209ENST00000558894 DBNLQ9UJU6 430 aaKnown RBP6.85□□□□□ -1.31
SMAD3-209ENST00000558894 AFG3L2Q9Y4W6 797 aa6.85□□□□□ -1.31
SMAD3-209ENST00000558894 FPGT-TNNI3KV9GXZ4 949 aa6.85□□□□□ -1.31
SMAD3-209ENST00000558894 NAV1Q8NEY1 1877 aa6.85□□□□□ -1.31
SMAD3-209ENST00000558894 KIAA0100Q14667 2235 aaKnown RBP6.84□□□□□ -1.31
SMAD3-209ENST00000558894 MYH8P13535 1937 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 ALPK3Q96L96 1907 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 A0A0G2JLL6 359 aaPredicted RBP6.84□□□□□ -1.31
SMAD3-209ENST00000558894 FAM196BA6NMK8 535 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 PDHXO00330 501 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 CXCL11O14625 94 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 BCRP11274 1271 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 PPP4CP60510 307 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 G3BP1Q13283 466 aaKnown RBP eCLIP6.84□□□□□ -1.31
SMAD3-209ENST00000558894 PICALMQ13492 652 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 SPTY2D1Q68D10 685 aaPredicted RBP6.84□□□□□ -1.31
SMAD3-209ENST00000558894 CEP85Q6P2H3 762 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 ERICH6Q7L0X2 663 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 PRRT2Q7Z6L0 340 aaPredicted RBP6.84□□□□□ -1.31
SMAD3-209ENST00000558894 METTL16Q86W50 562 aaKnown RBP6.84□□□□□ -1.31
SMAD3-209ENST00000558894 DZIP1Q86YF9 867 aaKnown RBP6.84□□□□□ -1.31
SMAD3-209ENST00000558894 SIRT2Q8IXJ6 389 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 SCYL3Q8IZE3 742 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 PANK1Q8TE04 598 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 SH3RF3Q8TEJ3 882 aaPredicted RBP6.84□□□□□ -1.31
SMAD3-209ENST00000558894 ZNF333Q96JL9 665 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 OSBPL5Q9H0X9 879 aaPredicted RBP6.84□□□□□ -1.31
SMAD3-209ENST00000558894 EFCC1Q9HA90 598 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 PIH1D3Q9NQM4 214 aaKnown RBP6.84□□□□□ -1.31
SMAD3-209ENST00000558894 SNRKQ9NRH2 765 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 PTCH2Q9Y6C5 1203 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 PARP14Q460N5 1801 aa6.84□□□□□ -1.31
SMAD3-209ENST00000558894 RLFQ13129 1914 aa6.84□□□□□ -1.32
SMAD3-209ENST00000558894 CTNND1O60716 968 aaKnown RBP6.83□□□□□ -1.32
SMAD3-209ENST00000558894 SURF6O75683 361 aaKnown RBP6.83□□□□□ -1.32
SMAD3-209ENST00000558894 MAP4K4O95819 1239 aaPredicted RBP6.83□□□□□ -1.32
SMAD3-209ENST00000558894 UQCRFS1P1P0C7P4 283 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms