RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 RCAN1P53805 252 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 SIK1P57059 783 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 ZRSR1Q15695 479 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 SUSD4Q5VX71 490 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 INTS5Q6P9B9 1019 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 SARM1Q6SZW1 724 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 SYNE3Q6ZMZ3 975 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 LUZP1Q86V48 1076 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 SGMS1Q86VZ5 419 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 TBC1D10CQ8IV04 446 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 JMYQ8N9B5 988 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 STRBPQ96SI9 672 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 NAPBQ9H115 298 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 SPTLC3Q9NUV7 552 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 ECM29Q5VYK3 1845 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 A0A1B0GUL6 1792 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 CAMTA2O94983 1202 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 LIFRP42702 1097 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 GUCY1B3Q02153 619 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 CEBPZQ03701 1054 aaKnown RBP8.44□□□□□ -1.06
VPS13C-206ENST00000558338 TRIM29Q14134 588 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 NOLC1Q14978 699 aaKnown RBP eCLIP8.44□□□□□ -1.06
VPS13C-206ENST00000558338 SART3Q15020 963 aaKnown RBP8.44□□□□□ -1.06
VPS13C-206ENST00000558338 DNTTIP2Q5QJE6 756 aaKnown RBP8.44□□□□□ -1.06
VPS13C-206ENST00000558338 MYSM1Q5VVJ2 828 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 CLEC4GQ6UXB4 293 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 ILDR1Q86SU0 546 aaPredicted RBP8.44□□□□□ -1.06
VPS13C-206ENST00000558338 PLA2G4DQ86XP0 818 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 CEP57L1Q8IYX8 460 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 LINC00301Q8NCQ3 95 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 ENGASEQ8NFI3 743 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 KRTAP3-3Q9BYR6 98 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 KRTAP3-2Q9BYR7 98 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 RNF41Q9H4P4 317 aaPredicted RBP8.44□□□□□ -1.06
VPS13C-206ENST00000558338 WWC3Q9ULE0 1092 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 SCN7AQ01118 1682 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 KAT6BQ8WYB5 2073 aa8.44□□□□□ -1.06
VPS13C-206ENST00000558338 DYNC1I1O14576 645 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 SPTLC2O15270 562 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 ZBTB43O43298 467 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 NEMFO60524 1076 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 NTSR2O95665 410 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 ZNF75DP51815 510 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 EMP3P54852 163 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 KIF23Q02241 960 aaPredicted RBP8.43□□□□□ -1.06
VPS13C-206ENST00000558338 CHAF1AQ13111 956 aaPredicted RBP8.43□□□□□ -1.06
VPS13C-206ENST00000558338 SNW1Q13573 536 aaKnown RBP8.43□□□□□ -1.06
VPS13C-206ENST00000558338 RASGRF1Q13972 1273 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 DHX8Q14562 1220 aaKnown RBP8.43□□□□□ -1.06
VPS13C-206ENST00000558338 APOA5Q6Q788 366 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 NFXL1Q6ZNB6 911 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 MAGEB6Q8N7X4 407 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 FBXW7Q969H0 707 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 MAP7D2Q96T17 732 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 TRIM5Q9C035 493 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 FAM117AQ9C073 453 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 NBPF3Q9H094 633 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 DNAJC25Q9H1X3 360 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 GOLPH3LQ9H4A5 285 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 OCEL1Q9H607 264 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 TTC12Q9H892 705 aaPredicted RBP8.43□□□□□ -1.06
VPS13C-206ENST00000558338 GNL3LQ9NVN8 582 aaKnown RBP8.43□□□□□ -1.06
VPS13C-206ENST00000558338 SPATA31A5Q5VU36 1347 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 SPATA31A7Q8IWB4 1347 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 UQCRHLA0A096LP55 91 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 ERICH2A1L162 156 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 CCDC69A6NI79 296 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 GOLGA8AA7E2F4 631 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 BECN2A8MW95 431 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 AP5Z1O43299 807 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 MBD4O95243 580 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 UQCRHP07919 91 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 TPM4P67936 248 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 GNL2Q13823 731 aaKnown RBP8.43□□□□□ -1.06
VPS13C-206ENST00000558338 TMEM67Q5HYA8 995 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 ANO1Q5XXA6 986 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 CYB5R4Q7L1T6 521 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 MTERF4Q7Z6M4 381 aaKnown RBP8.43□□□□□ -1.06
VPS13C-206ENST00000558338 DRC7Q8IY82 874 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 IFNL3Q8IZI9 196 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 FMR1NBQ8N0W7 255 aaPredicted RBP8.43□□□□□ -1.06
VPS13C-206ENST00000558338 TMTC2Q8N394 836 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 STAG1Q8WVM7 1258 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 MRFAP1L1Q96HT8 127 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 BPIFA3Q9BQP9 254 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 ALG1Q9BT22 464 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 GPHNQ9NQX3 736 aaPredicted RBP8.43□□□□□ -1.06
VPS13C-206ENST00000558338 PCDHA7Q9UN72 937 aa8.43□□□□□ -1.06
VPS13C-206ENST00000558338 NIP7Q9Y221 180 aaKnown RBP eCLIP8.43□□□□□ -1.06
VPS13C-206ENST00000558338 CCDC196A0A1B0GTZ2 297 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 B4E1Z4 1266 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 PPP6R2O75170 966 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 IARSP41252 1262 aaKnown RBP8.42□□□□□ -1.06
VPS13C-206ENST00000558338 TDO2P48775 406 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 PDE4DQ08499 809 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 IQCB1Q15051 598 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 AKNAD1Q5T1N1 836 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 TMED8Q6PL24 325 aaPredicted RBP8.42□□□□□ -1.06
VPS13C-206ENST00000558338 MFSD6Q6ZSS7 791 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 SPC24Q8NBT2 197 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms