RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 NOP58Q9Y2X3 529 aaKnown RBP12.48□□□□□ -0.41
USP3-207ENST00000558218 CASP8AP2Q9UKL3 1982 aa12.48□□□□□ -0.41
USP3-207ENST00000558218 MYH13Q9UKX3 1938 aa12.48□□□□□ -0.41
USP3-207ENST00000558218 MAP4K4O95819 1239 aaPredicted RBP12.47□□□□□ -0.41
USP3-207ENST00000558218 MAP3K9P80192 1104 aa12.47□□□□□ -0.41
USP3-207ENST00000558218 OTUD7BQ6GQQ9 843 aa12.47□□□□□ -0.41
USP3-207ENST00000558218 FAM151AQ8WW52 585 aa12.47□□□□□ -0.41
USP3-207ENST00000558218 ABHD8Q96I13 439 aa12.47□□□□□ -0.41
USP3-207ENST00000558218 WNK4Q96J92 1243 aa12.47□□□□□ -0.41
USP3-207ENST00000558218 NEUROD6Q96NK8 337 aa12.47□□□□□ -0.41
USP3-207ENST00000558218 CHMP4BQ9H444 224 aaKnown RBP12.47□□□□□ -0.41
USP3-207ENST00000558218 SSC5DA1L4H1 1573 aa12.47□□□□□ -0.41
USP3-207ENST00000558218 RPAP1Q9BWH6 1393 aaPredicted RBP12.46□□□□□ -0.41
USP3-207ENST00000558218 TESPA1A2RU30 521 aaPredicted RBP12.46□□□□□ -0.41
USP3-207ENST00000558218 UQCRFS1P1P0C7P4 283 aa12.46□□□□□ -0.41
USP3-207ENST00000558218 PRDX5P30044 214 aa12.46□□□□□ -0.41
USP3-207ENST00000558218 ADORA1P30542 326 aa12.46□□□□□ -0.41
USP3-207ENST00000558218 RASGRF1Q13972 1273 aa12.46□□□□□ -0.41
USP3-207ENST00000558218 GORABQ5T7V8 394 aa12.46□□□□□ -0.41
USP3-207ENST00000558218 DCAF15Q66K64 600 aa12.46□□□□□ -0.41
USP3-207ENST00000558218 ITPRIPQ8IWB1 547 aa12.46□□□□□ -0.41
USP3-207ENST00000558218 TMEM39BQ9GZU3 492 aa12.46□□□□□ -0.41
USP3-207ENST00000558218 DAGLAQ9Y4D2 1042 aa12.46□□□□□ -0.41
USP3-207ENST00000558218 SURF6O75683 361 aaKnown RBP12.45□□□□□ -0.42
USP3-207ENST00000558218 LDHCP07864 332 aa12.45□□□□□ -0.42
USP3-207ENST00000558218 PKN2Q16513 984 aaKnown RBP12.45□□□□□ -0.42
USP3-207ENST00000558218 CDC42EP5Q6NZY7 148 aa12.45□□□□□ -0.42
USP3-207ENST00000558218 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.45□□□□□ -0.42
USP3-207ENST00000558218 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.45□□□□□ -0.42
USP3-207ENST00000558218 CLMNQ96JQ2 1002 aa12.45□□□□□ -0.42
USP3-207ENST00000558218 ZNF512BQ96KM6 892 aaPredicted RBP12.45□□□□□ -0.42
USP3-207ENST00000558218 IDI2Q9BXS1 227 aa12.45□□□□□ -0.42
USP3-207ENST00000558218 CSADQ9Y600 493 aa12.45□□□□□ -0.42
USP3-207ENST00000558218 GAKO14976 1311 aa12.44□□□□□ -0.42
USP3-207ENST00000558218 ENTPD3O75355 529 aa12.44□□□□□ -0.42
USP3-207ENST00000558218 RLBP1P12271 317 aa12.44□□□□□ -0.42
USP3-207ENST00000558218 ARID4AP29374 1257 aaPredicted RBP12.44□□□□□ -0.42
USP3-207ENST00000558218 GSTO1P78417 241 aa12.44□□□□□ -0.42
USP3-207ENST00000558218 DGKZQ13574 1117 aa12.44□□□□□ -0.42
USP3-207ENST00000558218 CCDC158Q5M9N0 1113 aa12.44□□□□□ -0.42
USP3-207ENST00000558218 ERICH6Q7L0X2 663 aa12.44□□□□□ -0.42
USP3-207ENST00000558218 SPATA5Q8NB90 893 aa12.44□□□□□ -0.42
USP3-207ENST00000558218 MCOLN1Q9GZU1 580 aa12.44□□□□□ -0.42
USP3-207ENST00000558218 USP40Q9NVE5 1235 aa12.44□□□□□ -0.42
USP3-207ENST00000558218 FZD1Q9UP38 647 aa12.44□□□□□ -0.42
USP3-207ENST00000558218 LAMB1P07942 1786 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 GPR25O00155 361 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 GTF2A2P52657 109 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 CACNB3P54284 484 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 OS9Q13438 667 aaPredicted RBP12.43□□□□□ -0.42
USP3-207ENST00000558218 DIXDC1Q155Q3 683 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 HSP90AB4PQ58FF6 505 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 CTU1Q7Z7A3 348 aaKnown RBP12.43□□□□□ -0.42
USP3-207ENST00000558218 DZIP1Q86YF9 867 aaKnown RBP12.43□□□□□ -0.42
USP3-207ENST00000558218 ZNF710Q8N1W2 664 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 TMC2Q8TDI7 906 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 ZNF341Q9BYN7 854 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 HMG20BQ9P0W2 317 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 ABCF2Q9UG63 623 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 ZNF112Q9UJU3 913 aa12.43□□□□□ -0.42
USP3-207ENST00000558218 GPR75-ASB3A0A0A6YYF3 556 aa12.42□□□□□ -0.42
USP3-207ENST00000558218 TBC1D8O95759 1140 aa12.42□□□□□ -0.42
USP3-207ENST00000558218 VGLL4Q14135 290 aa12.42□□□□□ -0.42
USP3-207ENST00000558218 TNNI3KQ59H18 835 aa12.42□□□□□ -0.42
USP3-207ENST00000558218 TMED8Q6PL24 325 aaPredicted RBP12.42□□□□□ -0.42
USP3-207ENST00000558218 ERO1BQ86YB8 467 aa12.42□□□□□ -0.42
USP3-207ENST00000558218 ERC1Q8IUD2 1116 aa12.42□□□□□ -0.42
USP3-207ENST00000558218 RPAP2Q8IXW5 612 aaPredicted RBP12.42□□□□□ -0.42
USP3-207ENST00000558218 OPTNQ96CV9 577 aa12.42□□□□□ -0.42
USP3-207ENST00000558218 ZCCHC17Q9NP64 241 aaKnown RBP12.42□□□□□ -0.42
USP3-207ENST00000558218 DDX19BQ9UMR2 479 aa12.42□□□□□ -0.42
USP3-207ENST00000558218 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.42□□□□□ -0.42
USP3-207ENST00000558218 FPGT-TNNI3KV9GXZ4 949 aa12.42□□□□□ -0.42
USP3-207ENST00000558218 MYH2Q9UKX2 1941 aa12.41□□□□□ -0.42
USP3-207ENST00000558218 SPDYE5A6NIY4 337 aa12.41□□□□□ -0.42
USP3-207ENST00000558218 FKTNO75072 461 aa12.41□□□□□ -0.42
USP3-207ENST00000558218 MAP3K10Q02779 954 aa12.41□□□□□ -0.42
USP3-207ENST00000558218 PPATQ06203 517 aa12.41□□□□□ -0.42
USP3-207ENST00000558218 CEP85Q6P2H3 762 aa12.41□□□□□ -0.42
USP3-207ENST00000558218 CDAN1Q8IWY9 1227 aa12.41□□□□□ -0.42
USP3-207ENST00000558218 ZNF296Q8WUU4 475 aaPredicted RBP12.41□□□□□ -0.42
USP3-207ENST00000558218 BBXQ8WY36 941 aaPredicted RBP12.41□□□□□ -0.42
USP3-207ENST00000558218 ELP3Q9H9T3 547 aa12.41□□□□□ -0.42
USP3-207ENST00000558218 FAM198AQ9UFP1 575 aa12.41□□□□□ -0.42
USP3-207ENST00000558218 RCAN3Q9UKA8 241 aa12.41□□□□□ -0.42
USP3-207ENST00000558218 WDHD1O75717 1129 aaPredicted RBP12.4□□□□□ -0.42
USP3-207ENST00000558218 CETPP11597 493 aa12.4□□□□□ -0.42
USP3-207ENST00000558218 GJA5P36382 358 aa12.4□□□□□ -0.42
USP3-207ENST00000558218 RGS19P49795 217 aa12.4□□□□□ -0.42
USP3-207ENST00000558218 MECOMQ03112 1051 aa12.4□□□□□ -0.42
USP3-207ENST00000558218 TCP10Q12799 353 aa12.4□□□□□ -0.42
USP3-207ENST00000558218 NFIAQ12857 509 aa12.4□□□□□ -0.42
USP3-207ENST00000558218 PDE3AQ14432 1141 aa12.4□□□□□ -0.42
USP3-207ENST00000558218 PANK1Q8TE04 598 aa12.4□□□□□ -0.42
USP3-207ENST00000558218 NSUN4Q96CB9 384 aaKnown RBP12.4□□□□□ -0.42
USP3-207ENST00000558218 WRNIP1Q96S55 665 aa12.4□□□□□ -0.42
USP3-207ENST00000558218 LRP2BPQ9P2M1 347 aa12.4□□□□□ -0.42
USP3-207ENST00000558218 MROH7-TTC4A0A0A0MT08 1334 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 CCDC85CA6NKD9 419 aa12.39□□□□□ -0.43
USP3-207ENST00000558218 IGF2BP3O00425 579 aaKnown RBP eCLIP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 134.9 ms