RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 TMEM39BQ9GZU3 492 aa25.52■■□□□ 1.68
CASC4-204ENST00000557945 FLT1P17948 1338 aa25.51■■□□□ 1.67
CASC4-204ENST00000557945 TRAF5O00463 557 aa25.51■■□□□ 1.67
CASC4-204ENST00000557945 CDC45O75419 566 aa25.51■■□□□ 1.67
CASC4-204ENST00000557945 ZSCAN29Q8IWY8 852 aaPredicted RBP25.51■■□□□ 1.67
CASC4-204ENST00000557945 ZFPM1Q8IX07 1006 aa25.51■■□□□ 1.67
CASC4-204ENST00000557945 PPP2R3BQ9Y5P8 575 aa25.51■■□□□ 1.67
CASC4-204ENST00000557945 NPM3O75607 178 aaKnown RBP25.5■■□□□ 1.67
CASC4-204ENST00000557945 APPP05067 770 aa25.5■■□□□ 1.67
CASC4-204ENST00000557945 GNAT2P19087 354 aa25.5■■□□□ 1.67
CASC4-204ENST00000557945 CASC1Q6TDU7 716 aa25.5■■□□□ 1.67
CASC4-204ENST00000557945 OSBPL5Q9H0X9 879 aaPredicted RBP25.5■■□□□ 1.67
CASC4-204ENST00000557945 CCDC171Q6TFL3 1326 aa25.49■■□□□ 1.67
CASC4-204ENST00000557945 MFAP1P55081 439 aaKnown RBP25.49■■□□□ 1.67
CASC4-204ENST00000557945 ZNF589Q86UQ0 364 aaPredicted RBP25.49■■□□□ 1.67
CASC4-204ENST00000557945 CDCA5Q96FF9 252 aa25.49■■□□□ 1.67
CASC4-204ENST00000557945 DDRGK1Q96HY6 314 aa25.49■■□□□ 1.67
CASC4-204ENST00000557945 SAP30BPQ9UHR5 308 aaKnown RBP25.49■■□□□ 1.67
CASC4-204ENST00000557945 ITGBL1O95965 494 aaPredicted RBP25.48■■□□□ 1.67
CASC4-204ENST00000557945 FSTL1Q12841 308 aa25.48■■□□□ 1.67
CASC4-204ENST00000557945 ATP8A2Q9NTI2 1148 aa25.48■■□□□ 1.67
CASC4-204ENST00000557945 FMR1Q06787 632 aaKnown RBP eCLIP25.47■■□□□ 1.67
CASC4-204ENST00000557945 CDAN1Q8IWY9 1227 aa25.47■■□□□ 1.67
CASC4-204ENST00000557945 ZNF408Q9H9D4 720 aa25.47■■□□□ 1.67
CASC4-204ENST00000557945 DCP1AQ9NPI6 582 aaPredicted RBP25.47■■□□□ 1.67
CASC4-204ENST00000557945 RAD50Q92878 1312 aa25.47■■□□□ 1.67
CASC4-204ENST00000557945 GSG1L2A8MUP6 293 aa25.46■■□□□ 1.67
CASC4-204ENST00000557945 PATL2C9JE40 543 aaKnown RBP25.46■■□□□ 1.67
CASC4-204ENST00000557945 NBPF12Q5TAG4 269 aaPredicted RBP25.46■■□□□ 1.67
CASC4-204ENST00000557945 TEPSINQ96N21 525 aa25.46■■□□□ 1.67
CASC4-204ENST00000557945 MCM9Q9NXL9 1143 aa25.46■■□□□ 1.67
CASC4-204ENST00000557945 SLC4A8Q2Y0W8 1093 aa25.45■■□□□ 1.67
CASC4-204ENST00000557945 SUPT20HL1Q3ZLR7 823 aa25.45■■□□□ 1.67
CASC4-204ENST00000557945 VPS53Q5VIR6 699 aa25.45■■□□□ 1.67
CASC4-204ENST00000557945 SH3BP5LQ7L8J4 393 aa25.45■■□□□ 1.67
CASC4-204ENST00000557945 NACAP1Q9BZK3 213 aa25.45■■□□□ 1.67
CASC4-204ENST00000557945 IL25Q9H293 177 aa25.45■■□□□ 1.67
CASC4-204ENST00000557945 PALD1Q9ULE6 856 aa25.45■■□□□ 1.67
CASC4-204ENST00000557945 DDTLA6NHG4 134 aaPredicted RBP25.44■■□□□ 1.66
CASC4-204ENST00000557945 SGSM2O43147 1006 aa25.44■■□□□ 1.66
CASC4-204ENST00000557945 NF2P35240 595 aa25.44■■□□□ 1.66
CASC4-204ENST00000557945 TDO2P48775 406 aa25.44■■□□□ 1.66
CASC4-204ENST00000557945 CSRNP1Q96S65 589 aa25.44■■□□□ 1.66
CASC4-204ENST00000557945 ESYT1Q9BSJ8 1104 aa25.44■■□□□ 1.66
CASC4-204ENST00000557945 CDK5RAP2Q96SN8 1893 aa25.44■■□□□ 1.66
CASC4-204ENST00000557945 RPAP1Q9BWH6 1393 aaPredicted RBP25.44■■□□□ 1.66
CASC4-204ENST00000557945 POLR3DP05423 398 aaPredicted RBP25.44■■□□□ 1.66
CASC4-204ENST00000557945 DHX36Q9H2U1 1008 aaKnown RBP25.44■■□□□ 1.66
CASC4-204ENST00000557945 MKRN1Q9UHC7 482 aaKnown RBP25.44■■□□□ 1.66
CASC4-204ENST00000557945 FOCADQ5VW36 1801 aa25.43■■□□□ 1.66
CASC4-204ENST00000557945 HSPD1P10809 573 aaKnown RBP25.43■■□□□ 1.66
CASC4-204ENST00000557945 GIMAP6Q6P9H5 292 aa25.43■■□□□ 1.66
CASC4-204ENST00000557945 AMOTL1Q8IY63 956 aa25.43■■□□□ 1.66
CASC4-204ENST00000557945 IFNL3Q8IZI9 196 aa25.43■■□□□ 1.66
CASC4-204ENST00000557945 EPB41L4AQ9HCS5 686 aaPredicted RBP25.43■■□□□ 1.66
CASC4-204ENST00000557945 ATRNL1Q5VV63 1379 aa25.42■■□□□ 1.66
CASC4-204ENST00000557945 CELF2O95319 508 aaKnown RBP25.42■■□□□ 1.66
CASC4-204ENST00000557945 HLA-DOAP06340 250 aa25.42■■□□□ 1.66
CASC4-204ENST00000557945 HOOK2Q96ED9 719 aa25.42■■□□□ 1.66
CASC4-204ENST00000557945 NAPBQ9H115 298 aa25.42■■□□□ 1.66
CASC4-204ENST00000557945 PASKQ96RG2 1323 aa25.41■■□□□ 1.66
CASC4-204ENST00000557945 COL2A1P02458 1487 aaPredicted RBP25.41■■□□□ 1.66
CASC4-204ENST00000557945 USP17L12C9JPN9 530 aa25.41■■□□□ 1.66
CASC4-204ENST00000557945 USP17L21D6R901 530 aa25.41■■□□□ 1.66
CASC4-204ENST00000557945 PRKG1Q13976 671 aa25.41■■□□□ 1.66
CASC4-204ENST00000557945 KIAA1211Q6ZU35 1233 aa25.41■■□□□ 1.66
CASC4-204ENST00000557945 TTC6Q86TZ1 520 aa25.41■■□□□ 1.66
CASC4-204ENST00000557945 PI4KBQ9UBF8 816 aa25.41■■□□□ 1.66
CASC4-204ENST00000557945 NAV1Q8NEY1 1877 aa25.4■■□□□ 1.66
CASC4-204ENST00000557945 FOXP2O15409 715 aa25.4■■□□□ 1.66
CASC4-204ENST00000557945 CYP2D6P10635 497 aa25.4■■□□□ 1.66
CASC4-204ENST00000557945 TTLL12Q14166 644 aaPredicted RBP25.4■■□□□ 1.66
CASC4-204ENST00000557945 CTR9Q6PD62 1173 aa25.4■■□□□ 1.66
CASC4-204ENST00000557945 MIGA2Q7L4E1 593 aa25.4■■□□□ 1.66
CASC4-204ENST00000557945 MINDY4BA8MYZ0 360 aa25.39■■□□□ 1.65
CASC4-204ENST00000557945 TRIM34Q9BYJ4 488 aa25.39■■□□□ 1.65
CASC4-204ENST00000557945 ARPP21Q9UBL0 812 aaPredicted RBP25.39■■□□□ 1.65
CASC4-204ENST00000557945 MYH1P12882 1939 aa25.38■■□□□ 1.65
CASC4-204ENST00000557945 CYP2D7A0A087X1C5 515 aa25.38■■□□□ 1.65
CASC4-204ENST00000557945 PLCD1P51178 756 aa25.38■■□□□ 1.65
CASC4-204ENST00000557945 DCAF15Q66K64 600 aa25.38■■□□□ 1.65
CASC4-204ENST00000557945 CRACR2BQ8N4Y2 399 aaPredicted RBP25.38■■□□□ 1.65
CASC4-204ENST00000557945 DSCC1Q9BVC3 393 aa25.38■■□□□ 1.65
CASC4-204ENST00000557945 BAZ2AQ9UIF9 1905 aaKnown RBP25.38■■□□□ 1.65
CASC4-204ENST00000557945 SSC5DA1L4H1 1573 aa25.37■■□□□ 1.65
CASC4-204ENST00000557945 PPP1R12BO60237 982 aaPredicted RBP25.37■■□□□ 1.65
CASC4-204ENST00000557945 ALX1Q15699 326 aa25.37■■□□□ 1.65
CASC4-204ENST00000557945 ANO2Q9NQ90 1003 aa25.37■■□□□ 1.65
CASC4-204ENST00000557945 FZD1Q9UP38 647 aa25.37■■□□□ 1.65
CASC4-204ENST00000557945 FGAP02671 866 aa25.36■■□□□ 1.65
CASC4-204ENST00000557945 SLURP2P0DP57 97 aa25.36■■□□□ 1.65
CASC4-204ENST00000557945 PTH1RQ03431 593 aa25.36■■□□□ 1.65
CASC4-204ENST00000557945 EVX2Q03828 476 aa25.36■■□□□ 1.65
CASC4-204ENST00000557945 SBK1Q52WX2 424 aa25.36■■□□□ 1.65
CASC4-204ENST00000557945 C12orf60Q5U649 245 aa25.36■■□□□ 1.65
CASC4-204ENST00000557945 CST9Q5W186 159 aa25.36■■□□□ 1.65
CASC4-204ENST00000557945 FOXP4Q8IVH2 680 aaPredicted RBP25.36■■□□□ 1.65
CASC4-204ENST00000557945 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.36■■□□□ 1.65
CASC4-204ENST00000557945 GBA2Q9HCG7 927 aaPredicted RBP25.36■■□□□ 1.65
CASC4-204ENST00000557945 DDX60LQ5H9U9 1706 aaKnown RBP25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 175.3 ms