RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TNS2Q63HR2 1409 aa18.66■□□□□ 0.58
SHMT2-231ENST00000557433 ZNF18P17022 549 aa18.66■□□□□ 0.58
SHMT2-231ENST00000557433 TUBB2AQ13885 445 aa18.66■□□□□ 0.58
SHMT2-231ENST00000557433 NKX1-1Q15270 411 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-231ENST00000557433 NTRK3Q16288 839 aa18.66■□□□□ 0.58
SHMT2-231ENST00000557433 LONRF3Q496Y0 759 aa18.66■□□□□ 0.58
SHMT2-231ENST00000557433 PROSER2Q86WR7 435 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-231ENST00000557433 NUTM2AQ8IVF1 878 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-231ENST00000557433 RABGGTAQ92696 567 aa18.66■□□□□ 0.58
SHMT2-231ENST00000557433 MTA3Q9BTC8 594 aa18.66■□□□□ 0.58
SHMT2-231ENST00000557433 TUBB2BQ9BVA1 445 aa18.66■□□□□ 0.58
SHMT2-231ENST00000557433 CARD6Q9BX69 1037 aa18.66■□□□□ 0.58
SHMT2-231ENST00000557433 BCL11BQ9C0K0 894 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-231ENST00000557433 NBPF3Q9H094 633 aa18.66■□□□□ 0.58
SHMT2-231ENST00000557433 TBC1D2BQ9UPU7 963 aa18.66■□□□□ 0.58
SHMT2-231ENST00000557433 GOLGA8AA7E2F4 631 aa18.65■□□□□ 0.58
SHMT2-231ENST00000557433 SSRP1Q08945 709 aaKnown RBP18.65■□□□□ 0.58
SHMT2-231ENST00000557433 SCARF1Q14162 830 aa18.65■□□□□ 0.58
SHMT2-231ENST00000557433 RILPL1Q5EBL4 403 aa18.65■□□□□ 0.58
SHMT2-231ENST00000557433 MRFAP1Q9Y605 127 aa18.65■□□□□ 0.58
SHMT2-231ENST00000557433 DCCP43146 1447 aa18.65■□□□□ 0.58
SHMT2-231ENST00000557433 CDHR2Q9BYE9 1310 aa18.65■□□□□ 0.58
SHMT2-231ENST00000557433 FMNL1O95466 1100 aaPredicted RBP18.64■□□□□ 0.58
SHMT2-231ENST00000557433 A1BGP04217 495 aa18.64■□□□□ 0.58
SHMT2-231ENST00000557433 ERCC5P28715 1186 aaPredicted RBP18.64■□□□□ 0.58
SHMT2-231ENST00000557433 RCAN1P53805 252 aa18.64■□□□□ 0.58
SHMT2-231ENST00000557433 POSTNQ15063 836 aa18.64■□□□□ 0.58
SHMT2-231ENST00000557433 ISM2Q6H9L7 571 aa18.64■□□□□ 0.58
SHMT2-231ENST00000557433 CYB5R4Q7L1T6 521 aa18.64■□□□□ 0.58
SHMT2-231ENST00000557433 TBC1D10CQ8IV04 446 aa18.64■□□□□ 0.58
SHMT2-231ENST00000557433 NOSTRINQ8IVI9 506 aa18.64■□□□□ 0.58
SHMT2-231ENST00000557433 IGDCC4Q8TDY8 1250 aa18.64■□□□□ 0.58
SHMT2-231ENST00000557433 NAA15Q9BXJ9 866 aaKnown RBP18.64■□□□□ 0.58
SHMT2-231ENST00000557433 CNNM2Q9H8M5 875 aa18.64■□□□□ 0.58
SHMT2-231ENST00000557433 CEP131Q9UPN4 1083 aa18.64■□□□□ 0.58
SHMT2-231ENST00000557433 IFNAR1P17181 557 aa18.64■□□□□ 0.57
SHMT2-231ENST00000557433 SARSP49591 514 aaKnown RBP18.64■□□□□ 0.57
SHMT2-231ENST00000557433 RSRC2Q7L4I2 434 aaKnown RBP18.64■□□□□ 0.57
SHMT2-231ENST00000557433 ZBTB38Q8NAP3 1195 aaPredicted RBP18.64■□□□□ 0.57
SHMT2-231ENST00000557433 FOXP1Q9H334 677 aaPredicted RBP18.64■□□□□ 0.57
SHMT2-231ENST00000557433 INTS13Q9NVM9 706 aa18.64■□□□□ 0.57
SHMT2-231ENST00000557433 TNS3Q68CZ2 1445 aa18.64■□□□□ 0.57
SHMT2-231ENST00000557433 RIC1Q4ADV7 1423 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 UQCRFS1P1P0C7P4 283 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 PTPREP23469 700 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 CDC27P30260 824 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 GNG11P61952 73 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 GPS2Q13227 327 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 NFXL1Q6ZNB6 911 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 RAB11FIP4Q86YS3 637 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 FOXP4Q8IVH2 680 aaPredicted RBP18.63■□□□□ 0.57
SHMT2-231ENST00000557433 TXLNBQ8N3L3 684 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 SMARCE1Q969G3 411 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 AIFM3Q96NN9 605 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 PANX2Q96RD6 677 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 LY9Q9HBG7 655 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.63■□□□□ 0.57
SHMT2-231ENST00000557433 MAN1B1Q9UKM7 699 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 UBN2Q6ZU65 1347 aa18.63■□□□□ 0.57
SHMT2-231ENST00000557433 TMEM232C9JQI7 657 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 CDK11BP21127 795 aaKnown RBP18.62■□□□□ 0.57
SHMT2-231ENST00000557433 PPP2R3AQ06190 1150 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 MORC3Q14149 939 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 SLC9C2Q5TAH2 1124 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 TC2NQ8N9U0 490 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 ZCRB1Q8TBF4 217 aaKnown RBP18.62■□□□□ 0.57
SHMT2-231ENST00000557433 SYTL4Q96C24 671 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-231ENST00000557433 CLIC6Q96NY7 704 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 TEX13AQ9BXU3 409 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-231ENST00000557433 ARFGAP3Q9NP61 516 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 RIPOR2Q9Y4F9 1068 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 LRP6O75581 1613 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 POTEB2H3BUK9 544 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 MCAMP43121 646 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 TMEM67Q5HYA8 995 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 METTL24Q5JXM2 366 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 CC2D1AQ6P1N0 951 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-231ENST00000557433 MICU3Q86XE3 530 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 TRIM22Q8IYM9 498 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 GOLGA1Q92805 767 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 NFE2L3Q9Y4A8 694 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 SLC12A7Q9Y666 1083 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 WDR17Q8IZU2 1322 aa18.62■□□□□ 0.57
SHMT2-231ENST00000557433 MMP1P03956 469 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 BRD3Q15059 726 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 KIF6Q6ZMV9 814 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 KRT23Q9C075 422 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 FAM217BQ9NTX9 383 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-231ENST00000557433 RAI14Q9P0K7 980 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 ECM29Q5VYK3 1845 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 CCDC196A0A1B0GTZ2 297 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 FANCGO15287 622 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 RANBP6O60518 1105 aaKnown RBP18.61■□□□□ 0.57
SHMT2-231ENST00000557433 CCDC175P0C221 793 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 BMP6P22004 513 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 PLCD1P51178 756 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 MSL3Q8N5Y2 521 aaKnown RBP18.61■□□□□ 0.57
SHMT2-231ENST00000557433 PHKBQ93100 1093 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 KIFC2Q96AC6 838 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 TSPYL1Q9H0U9 437 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms