RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 FAM217BQ9NTX9 383 aaPredicted RBP13.08□□□□□ -0.31
SRP54-213ENST00000556994 ARGLU1Q9NWB6 273 aaPredicted RBP13.08□□□□□ -0.31
SRP54-213ENST00000556994 UBN2Q6ZU65 1347 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 SPEF2Q9C093 1822 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 CCDC66A2RUB6 948 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 BTBD18B2RXH4 712 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 ARHGAP6O43182 974 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 CUTAO60888 179 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 CDKL5O76039 1030 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 ATP2B1P20020 1258 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 CASQ1P31415 396 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 MDM2Q00987 491 aaPredicted RBP13.08□□□□□ -0.32
SRP54-213ENST00000556994 CPLX2Q6PUV4 134 aaKnown RBP13.08□□□□□ -0.32
SRP54-213ENST00000556994 IGDCC4Q8TDY8 1250 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 ZBTB9Q96C00 473 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 ISCA1Q9BUE6 129 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.08□□□□□ -0.322e-6■■■□□ 16
SRP54-213ENST00000556994 KCNJ14Q9UNX9 436 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 ZNF532Q9HCE3 1301 aa13.08□□□□□ -0.32
SRP54-213ENST00000556994 EFCAB8A8MWE9 144 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 POLR2DO15514 142 aaKnown RBP13.07□□□□□ -0.32
SRP54-213ENST00000556994 SASH3O75995 380 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 CTDSPL2Q05D32 466 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 TCIRG1Q13488 830 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 KARSQ15046 597 aaKnown RBP13.07□□□□□ -0.32
SRP54-213ENST00000556994 TMEM67Q5HYA8 995 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 TEX35Q5T0J7 233 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 LDHAL6AQ6ZMR3 332 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 CMTR1Q8N1G2 835 aaKnown RBP13.07□□□□□ -0.32
SRP54-213ENST00000556994 MAN1B1Q9UKM7 699 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 NFE2L3Q9Y4A8 694 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 WDR19Q8NEZ3 1342 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 FAM237AA0A1B0GTK4 181 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 KRI1Q8N9T8 703 aaKnown RBP13.07□□□□□ -0.32
SRP54-213ENST00000556994 TC2NQ8N9U0 490 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 SRRTQ9BXP5 876 aaKnown RBP13.07□□□□□ -0.32
SRP54-213ENST00000556994 IRX2Q9BZI1 471 aaPredicted RBP13.07□□□□□ -0.32
SRP54-213ENST00000556994 LY9Q9HBG7 655 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.07□□□□□ -0.32
SRP54-213ENST00000556994 SAMSN1Q9NSI8 373 aaKnown RBP13.07□□□□□ -0.32
SRP54-213ENST00000556994 SERTAD1Q9UHV2 236 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 WWC3Q9ULE0 1092 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 NUP188Q5SRE5 1749 aa13.07□□□□□ -0.32
SRP54-213ENST00000556994 GPTP24298 496 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 CYP2C19P33261 490 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 TOB1P50616 345 aaPredicted RBP13.06□□□□□ -0.32
SRP54-213ENST00000556994 TBX2Q13207 712 aaPredicted RBP13.06□□□□□ -0.32
SRP54-213ENST00000556994 MTF1Q14872 753 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 POSTNQ15063 836 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 ZCRB1Q8TBF4 217 aaKnown RBP13.06□□□□□ -0.32
SRP54-213ENST00000556994 CCDC34Q96HJ3 373 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 TRERF1Q96PN7 1200 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 ZKSCAN3Q9BRR0 538 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 GREM2Q9H772 168 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 ZSWIM4Q9H7M6 989 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 PODXL2Q9NZ53 605 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 LAMB4A4D0S4 1761 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 PPP2R3AQ06190 1150 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 SSRP1Q08945 709 aaKnown RBP13.06□□□□□ -0.32
SRP54-213ENST00000556994 SEC31BQ9NQW1 1179 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 CNNM1Q9NRU3 951 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 ZSWIM5Q9P217 1185 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 RIPOR2Q9Y4F9 1068 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 TACC3Q9Y6A5 838 aa13.06□□□□□ -0.32
SRP54-213ENST00000556994 MYO5AQ9Y4I1 1855 aaKnown RBP13.06□□□□□ -0.32
SRP54-213ENST00000556994 IFIT3O14879 490 aaKnown RBP13.05□□□□□ -0.32
SRP54-213ENST00000556994 TBC1D8O95759 1140 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 ITGA6P23229 1130 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 MAP3K9P80192 1104 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 NR5A1Q13285 461 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 SPECC1LQ69YQ0 1117 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 USP49Q70CQ1 688 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 FCHSD1Q86WN1 690 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 NOSTRINQ8IVI9 506 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 MED15Q96RN5 788 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 SLC12A7Q9Y666 1083 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 DDX60Q8IY21 1712 aaKnown RBP13.05□□□□□ -0.32
SRP54-213ENST00000556994 COL18A1P39060 1754 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 A0A0U1RQJ8 604 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 PHKA1P46020 1223 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 ST5P78524 1137 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 RRP12Q5JTH9 1297 aaKnown RBP13.05□□□□□ -0.32
SRP54-213ENST00000556994 DIS3L2Q8IYB7 885 aaKnown RBP13.05□□□□□ -0.32
SRP54-213ENST00000556994 HELBQ8NG08 1087 aaPredicted RBP13.05□□□□□ -0.32
SRP54-213ENST00000556994 ATRIPQ8WXE1 791 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 DHX58Q96C10 678 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 MPHOSPH8Q99549 860 aa13.05□□□□□ -0.32
SRP54-213ENST00000556994 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.05□□□□□ -0.32
SRP54-213ENST00000556994 ALS2Q96Q42 1657 aa13.04□□□□□ -0.32
SRP54-213ENST00000556994 STX10O60499 249 aa13.04□□□□□ -0.32
SRP54-213ENST00000556994 CSF1RP07333 972 aa13.04□□□□□ -0.32
SRP54-213ENST00000556994 PDE6AP16499 860 aa13.04□□□□□ -0.32
SRP54-213ENST00000556994 HNRNPH2P55795 449 aaKnown RBP13.04□□□□□ -0.32
SRP54-213ENST00000556994 CC2D1AQ6P1N0 951 aaPredicted RBP13.04□□□□□ -0.32
SRP54-213ENST00000556994 TOM1L2Q6ZVM7 507 aa13.04□□□□□ -0.32
SRP54-213ENST00000556994 NEK11Q8NG66 645 aa13.04□□□□□ -0.32
SRP54-213ENST00000556994 CPLX3Q8WVH0 158 aa13.04□□□□□ -0.32
SRP54-213ENST00000556994 SMARCE1Q969G3 411 aa13.04□□□□□ -0.32
SRP54-213ENST00000556994 AIDAQ96BJ3 306 aa13.04□□□□□ -0.32
SRP54-213ENST00000556994 TMEM87BQ96K49 555 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms