RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 PCDH1Q08174 1060 aa6.34□□□□□ -1.39
SRP54-212ENST00000556992 GPATCH8Q9UKJ3 1502 aaKnown RBP6.34□□□□□ -1.39
SRP54-212ENST00000556992 AKNAQ7Z591 1439 aa6.33□□□□□ -1.4
SRP54-212ENST00000556992 RAPGEF6Q8TEU7 1601 aa6.33□□□□□ -1.4
SRP54-212ENST00000556992 A0A096LPE4 126 aa6.33□□□□□ -1.4
SRP54-212ENST00000556992 A0A1W2PPZ6 126 aa6.33□□□□□ -1.4
SRP54-212ENST00000556992 PPP1R15AO75807 674 aaPredicted RBP6.33□□□□□ -1.4
SRP54-212ENST00000556992 ITGB5P18084 799 aa6.33□□□□□ -1.4
SRP54-212ENST00000556992 EFCAB2Q5VUJ9 269 aa6.33□□□□□ -1.4
SRP54-212ENST00000556992 CCDC97Q96F63 343 aaPredicted RBP6.33□□□□□ -1.4
SRP54-212ENST00000556992 SIN3AQ96ST3 1273 aa6.33□□□□□ -1.4
SRP54-212ENST00000556992 MPHOSPH9Q99550 1183 aa6.33□□□□□ -1.4
SRP54-212ENST00000556992 ZFYVE28Q9HCC9 887 aa6.33□□□□□ -1.4
SRP54-212ENST00000556992 ABCC5O15440 1437 aa6.33□□□□□ -1.4
SRP54-212ENST00000556992 ABCA8O94911 1581 aa6.32□□□□□ -1.4
SRP54-212ENST00000556992 HNRNPMP52272 730 aaKnown RBP eCLIP6.32□□□□□ -1.4
SRP54-212ENST00000556992 ZNF211Q13398 564 aaPredicted RBP6.32□□□□□ -1.4
SRP54-212ENST00000556992 POU4F3Q15319 338 aa6.32□□□□□ -1.4
SRP54-212ENST00000556992 CPSF6Q16630 551 aaKnown RBP eCLIP6.32□□□□□ -1.4
SRP54-212ENST00000556992 USPL1Q5W0Q7 1092 aa6.32□□□□□ -1.4
SRP54-212ENST00000556992 ALKBH2Q6NS38 261 aa6.32□□□□□ -1.4
SRP54-212ENST00000556992 WFDC3Q8IUB2 231 aa6.32□□□□□ -1.4
SRP54-212ENST00000556992 ASIC4Q96FT7 647 aa6.32□□□□□ -1.4
SRP54-212ENST00000556992 TRIM56Q9BRZ2 755 aaKnown RBP6.32□□□□□ -1.4
SRP54-212ENST00000556992 YIPF2Q9BWQ6 316 aa6.32□□□□□ -1.4
SRP54-212ENST00000556992 RAD18Q9NS91 495 aa6.32□□□□□ -1.4
SRP54-212ENST00000556992 DAGLAQ9Y4D2 1042 aa6.32□□□□□ -1.4
SRP54-212ENST00000556992 SUPT6HQ7KZ85 1726 aaKnown RBP6.32□□□□□ -1.4
SRP54-212ENST00000556992 ANKRD30AQ9BXX3 1397 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 ERCC6L2Q5T890 1561 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 UHRF1BP1LA0JNW5 1464 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 A0A1W2PP55 124 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 TMEM88BA6NKF7 163 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 PAPLNO95428 1278 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 ABL1P00519 1130 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 SSFA2P28290 1259 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 BNIP3Q12983 259 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 ZNF648Q5T619 568 aaPredicted RBP6.31□□□□□ -1.4
SRP54-212ENST00000556992 DUSP27Q5VZP5 1158 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 SPRED2Q7Z698 418 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 FBXO41Q8TF61 875 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 TCF12Q99081 682 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 CLEC4MQ9H2X3 399 aaPredicted RBP6.31□□□□□ -1.4
SRP54-212ENST00000556992 ACSS3Q9H6R3 686 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 C1GALT1Q9NS00 363 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 DAPK1P53355 1430 aa6.31□□□□□ -1.4
SRP54-212ENST00000556992 ASPAP45381 313 aa6.3□□□□□ -1.4
SRP54-212ENST00000556992 ZNF124Q15973 351 aa6.3□□□□□ -1.4
SRP54-212ENST00000556992 CCNJLQ8IV13 435 aa6.3□□□□□ -1.4
SRP54-212ENST00000556992 POU5F2Q8N7G0 328 aa6.3□□□□□ -1.4
SRP54-212ENST00000556992 LIN7BQ9HAP6 207 aa6.3□□□□□ -1.4
SRP54-212ENST00000556992 U3KQE9 123 aa6.3□□□□□ -1.4
SRP54-212ENST00000556992 NCOA1Q15788 1441 aa6.3□□□□□ -1.4
SRP54-212ENST00000556992 ABCC10Q5T3U5 1492 aa6.29□□□□□ -1.4
SRP54-212ENST00000556992 CD96P40200 585 aa6.29□□□□□ -1.4
SRP54-212ENST00000556992 MAP7Q14244 749 aa6.29□□□□□ -1.4
SRP54-212ENST00000556992 PLCL1Q15111 1095 aa6.29□□□□□ -1.4
SRP54-212ENST00000556992 GJD3Q8N144 294 aa6.29□□□□□ -1.4
SRP54-212ENST00000556992 FAM181AQ8N9Y4 354 aa6.29□□□□□ -1.4
SRP54-212ENST00000556992 AGBL5Q8NDL9 886 aa6.29□□□□□ -1.4
SRP54-212ENST00000556992 BCL7CQ8WUZ0 217 aaPredicted RBP6.29□□□□□ -1.4
SRP54-212ENST00000556992 PPP1R9AQ9ULJ8 1098 aa6.29□□□□□ -1.4
SRP54-212ENST00000556992 PTPN23Q9H3S7 1636 aa6.28□□□□□ -1.4
SRP54-212ENST00000556992 CYP11A1P05108 521 aa6.28□□□□□ -1.4
SRP54-212ENST00000556992 NPR3P17342 541 aa6.28□□□□□ -1.4
SRP54-212ENST00000556992 EHHADHQ08426 723 aa6.28□□□□□ -1.4
SRP54-212ENST00000556992 CDK5R2Q13319 367 aa6.28□□□□□ -1.4
SRP54-212ENST00000556992 PDE3AQ14432 1141 aa6.28□□□□□ -1.4
SRP54-212ENST00000556992 PHLDB3Q6NSJ2 640 aa6.28□□□□□ -1.4
SRP54-212ENST00000556992 SEZ6L2Q6UXD5 910 aa6.28□□□□□ -1.4
SRP54-212ENST00000556992 CORO1BQ9BR76 489 aa6.28□□□□□ -1.4
SRP54-212ENST00000556992 WDR18Q9BV38 432 aa6.28□□□□□ -1.4
SRP54-212ENST00000556992 ZC3H12CQ9C0D7 883 aaKnown RBP6.28□□□□□ -1.4
SRP54-212ENST00000556992 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.28□□□□□ -1.4
SRP54-212ENST00000556992 TONSLQ96HA7 1378 aa6.28□□□□□ -1.4
SRP54-212ENST00000556992 KIAA1107Q9UPP5 1409 aa6.27□□□□□ -1.41
SRP54-212ENST00000556992 ABCC2Q92887 1545 aa6.27□□□□□ -1.41
SRP54-212ENST00000556992 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.27□□□□□ -1.41
SRP54-212ENST00000556992 AOC2O75106 756 aa6.27□□□□□ -1.41
SRP54-212ENST00000556992 FAM13AO94988 1023 aa6.27□□□□□ -1.41
SRP54-212ENST00000556992 JUNBP17275 347 aaPredicted RBP6.27□□□□□ -1.41
SRP54-212ENST00000556992 USP5P45974 858 aa6.27□□□□□ -1.41
SRP54-212ENST00000556992 ZNF157P51786 506 aaPredicted RBP6.27□□□□□ -1.41
SRP54-212ENST00000556992 ZNF792Q3KQV3 632 aa6.27□□□□□ -1.41
SRP54-212ENST00000556992 LCE4AQ5TA78 99 aa6.27□□□□□ -1.41
SRP54-212ENST00000556992 PLD6Q8N2A8 252 aaKnown RBP6.27□□□□□ -1.41
SRP54-212ENST00000556992 WDR89Q96FK6 387 aaPredicted RBP6.27□□□□□ -1.41
SRP54-212ENST00000556992 SLC5A6Q9Y289 635 aa6.27□□□□□ -1.41
SRP54-212ENST00000556992 SHROOM2Q13796 1616 aa6.27□□□□□ -1.41
SRP54-212ENST00000556992 PLCH2O75038 1416 aa6.26□□□□□ -1.41
SRP54-212ENST00000556992 MAPKBP1O60336 1514 aa6.26□□□□□ -1.41
SRP54-212ENST00000556992 KDM5BQ9UGL1 1544 aa6.26□□□□□ -1.41
SRP54-212ENST00000556992 LIG1P18858 919 aa6.26□□□□□ -1.41
SRP54-212ENST00000556992 GALNT12Q8IXK2 581 aa6.26□□□□□ -1.41
SRP54-212ENST00000556992 ZNF576Q9H609 170 aa6.26□□□□□ -1.41
SRP54-212ENST00000556992 SERPINA10Q9UK55 444 aa6.26□□□□□ -1.41
SRP54-212ENST00000556992 CAMSAP2Q08AD1 1489 aa6.26□□□□□ -1.41
SRP54-212ENST00000556992 PLEKHH2Q8IVE3 1493 aa6.26□□□□□ -1.41
SRP54-212ENST00000556992 ANKRD50Q9ULJ7 1429 aa6.25□□□□□ -1.41
SRP54-212ENST00000556992 CYP27A1Q02318 531 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms