RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 CNTNAP1P78357 1384 aa16.83■□□□□ 0.28
VIPAS39-208ENST00000556412 TRAF5O00463 557 aa16.83■□□□□ 0.28
VIPAS39-208ENST00000556412 GNAT2P19087 354 aa16.83■□□□□ 0.28
VIPAS39-208ENST00000556412 MFAP1P55081 439 aaKnown RBP16.83■□□□□ 0.28
VIPAS39-208ENST00000556412 FKBP1CQ5VVH2 108 aa16.83■□□□□ 0.28
VIPAS39-208ENST00000556412 IL25Q9H293 177 aa16.83■□□□□ 0.28
VIPAS39-208ENST00000556412 ENTPD3O75355 529 aa16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 VPS53Q5VIR6 699 aa16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 FAM83AQ86UY5 434 aa16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 FAM151AQ8WW52 585 aa16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 OSBPL5Q9H0X9 879 aaPredicted RBP16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 ZNF408Q9H9D4 720 aa16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 TDO2P48775 406 aa16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 FMR1Q06787 632 aaKnown RBP eCLIP16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 CDAN1Q8IWY9 1227 aa16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 RBM46Q8TBY0 533 aaKnown RBP16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 DCP1AQ9NPI6 582 aaPredicted RBP16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 MCM9Q9NXL9 1143 aa16.82■□□□□ 0.28
VIPAS39-208ENST00000556412 RAD50Q92878 1312 aa16.81■□□□□ 0.28
VIPAS39-208ENST00000556412 MYO5AQ9Y4I1 1855 aaKnown RBP16.81■□□□□ 0.28
VIPAS39-208ENST00000556412 CDCA5Q96FF9 252 aa16.81■□□□□ 0.28
VIPAS39-208ENST00000556412 ESYT1Q9BSJ8 1104 aa16.81■□□□□ 0.28
VIPAS39-208ENST00000556412 NACAP1Q9BZK3 213 aa16.81■□□□□ 0.28
VIPAS39-208ENST00000556412 ATP8A2Q9NTI2 1148 aa16.81■□□□□ 0.28
VIPAS39-208ENST00000556412 PALD1Q9ULE6 856 aa16.81■□□□□ 0.28
VIPAS39-208ENST00000556412 PPP2R3BQ9Y5P8 575 aa16.81■□□□□ 0.28
VIPAS39-208ENST00000556412 GSG1L2A8MUP6 293 aa16.8■□□□□ 0.28
VIPAS39-208ENST00000556412 PATL2C9JE40 543 aaKnown RBP16.8■□□□□ 0.28
VIPAS39-208ENST00000556412 SGSM2O43147 1006 aa16.8■□□□□ 0.28
VIPAS39-208ENST00000556412 POLR3DP05423 398 aaPredicted RBP16.8■□□□□ 0.28
VIPAS39-208ENST00000556412 CSRNP1Q96S65 589 aa16.8■□□□□ 0.28
VIPAS39-208ENST00000556412 MYH2Q9UKX2 1941 aa16.8■□□□□ 0.28
VIPAS39-208ENST00000556412 DDTLA6NHG4 134 aaPredicted RBP16.8■□□□□ 0.28
VIPAS39-208ENST00000556412 NBPF12Q5TAG4 269 aaPredicted RBP16.8■□□□□ 0.28
VIPAS39-208ENST00000556412 NAPBQ9H115 298 aa16.8■□□□□ 0.28
VIPAS39-208ENST00000556412 EPB41L4AQ9HCS5 686 aaPredicted RBP16.8■□□□□ 0.28
VIPAS39-208ENST00000556412 NPM3O75607 178 aaKnown RBP16.79■□□□□ 0.28
VIPAS39-208ENST00000556412 HSPD1P10809 573 aaKnown RBP16.79■□□□□ 0.28
VIPAS39-208ENST00000556412 PRKG1Q13976 671 aa16.79■□□□□ 0.28
VIPAS39-208ENST00000556412 KIAA1211Q6ZU35 1233 aa16.79■□□□□ 0.28
VIPAS39-208ENST00000556412 SH3BP5LQ7L8J4 393 aa16.79■□□□□ 0.28
VIPAS39-208ENST00000556412 AMOTL1Q8IY63 956 aa16.79■□□□□ 0.28
VIPAS39-208ENST00000556412 IFNL3Q8IZI9 196 aa16.79■□□□□ 0.28
VIPAS39-208ENST00000556412 ANO2Q9NQ90 1003 aa16.79■□□□□ 0.28
VIPAS39-208ENST00000556412 HLA-DOAP06340 250 aa16.78■□□□□ 0.28
VIPAS39-208ENST00000556412 CYP2D6P10635 497 aa16.78■□□□□ 0.28
VIPAS39-208ENST00000556412 NF2P35240 595 aa16.78■□□□□ 0.28
VIPAS39-208ENST00000556412 TEPSINQ96N21 525 aa16.78■□□□□ 0.28
VIPAS39-208ENST00000556412 CYP2D7A0A087X1C5 515 aa16.77■□□□□ 0.28
VIPAS39-208ENST00000556412 MINDY4BA8MYZ0 360 aa16.77■□□□□ 0.28
VIPAS39-208ENST00000556412 USP17L12C9JPN9 530 aa16.77■□□□□ 0.28
VIPAS39-208ENST00000556412 USP17L21D6R901 530 aa16.77■□□□□ 0.28
VIPAS39-208ENST00000556412 FOXP2O15409 715 aa16.77■□□□□ 0.28
VIPAS39-208ENST00000556412 ITGBL1O95965 494 aaPredicted RBP16.77■□□□□ 0.28
VIPAS39-208ENST00000556412 SUPT20HL1Q3ZLR7 823 aa16.77■□□□□ 0.28
VIPAS39-208ENST00000556412 MIGA2Q7L4E1 593 aa16.77■□□□□ 0.28
VIPAS39-208ENST00000556412 DHX36Q9H2U1 1008 aaKnown RBP16.77■□□□□ 0.28
VIPAS39-208ENST00000556412 MKRN1Q9UHC7 482 aaKnown RBP16.77■□□□□ 0.28
VIPAS39-208ENST00000556412 FSTL1Q12841 308 aa16.77■□□□□ 0.27
VIPAS39-208ENST00000556412 TTLL12Q14166 644 aaPredicted RBP16.77■□□□□ 0.27
VIPAS39-208ENST00000556412 CTR9Q6PD62 1173 aa16.77■□□□□ 0.27
VIPAS39-208ENST00000556412 TTC6Q86TZ1 520 aa16.77■□□□□ 0.27
VIPAS39-208ENST00000556412 STK11IPQ8N1F8 1099 aa16.77■□□□□ 0.27
VIPAS39-208ENST00000556412 CRACR2BQ8N4Y2 399 aaPredicted RBP16.77■□□□□ 0.27
VIPAS39-208ENST00000556412 TRIM34Q9BYJ4 488 aa16.77■□□□□ 0.27
VIPAS39-208ENST00000556412 FZD1Q9UP38 647 aa16.77■□□□□ 0.27
VIPAS39-208ENST00000556412 FAM196BA6NMK8 535 aa16.76■□□□□ 0.27
VIPAS39-208ENST00000556412 CELF2O95319 508 aaKnown RBP16.76■□□□□ 0.27
VIPAS39-208ENST00000556412 SLURP2P0DP57 97 aa16.76■□□□□ 0.27
VIPAS39-208ENST00000556412 EVX2Q03828 476 aa16.76■□□□□ 0.27
VIPAS39-208ENST00000556412 GIMAP6Q6P9H5 292 aa16.76■□□□□ 0.27
VIPAS39-208ENST00000556412 ARPP21Q9UBL0 812 aaPredicted RBP16.76■□□□□ 0.27
VIPAS39-208ENST00000556412 RPAP1Q9BWH6 1393 aaPredicted RBP16.76■□□□□ 0.27
VIPAS39-208ENST00000556412 PLCD1P51178 756 aa16.75■□□□□ 0.27
VIPAS39-208ENST00000556412 PTH1RQ03431 593 aa16.75■□□□□ 0.27
VIPAS39-208ENST00000556412 PI4KBQ9UBF8 816 aa16.75■□□□□ 0.27
VIPAS39-208ENST00000556412 ATRNL1Q5VV63 1379 aa16.75■□□□□ 0.27
VIPAS39-208ENST00000556412 FGAP02671 866 aa16.75■□□□□ 0.27
VIPAS39-208ENST00000556412 HOOK2Q96ED9 719 aa16.75■□□□□ 0.27
VIPAS39-208ENST00000556412 DSCC1Q9BVC3 393 aa16.75■□□□□ 0.27
VIPAS39-208ENST00000556412 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.75■□□□□ 0.27
VIPAS39-208ENST00000556412 SMIM22K7EJ46 135 aa16.74■□□□□ 0.27
VIPAS39-208ENST00000556412 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.74■□□□□ 0.27
VIPAS39-208ENST00000556412 MYH7P12883 1935 aa16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 PPP1R12BO60237 982 aaPredicted RBP16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 HAND2P61296 217 aa16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 C12orf60Q5U649 245 aa16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 DCAF15Q66K64 600 aa16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 DYNLL2Q96FJ2 89 aa16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 LSG1Q9H089 658 aaKnown RBP16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 SERPINB13Q9UIV8 391 aa16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 COL2A1P02458 1487 aaPredicted RBP16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 PASKQ96RG2 1323 aa16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 PPARAQ07869 468 aa16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 ALX1Q15699 326 aa16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 MOB2Q70IA6 237 aa16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 CTNNA3Q9UI47 895 aa16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 ANGEL1Q9UNK9 670 aaKnown RBP16.73■□□□□ 0.27
VIPAS39-208ENST00000556412 SSC5DA1L4H1 1573 aa16.72■□□□□ 0.27
VIPAS39-208ENST00000556412 REC8O95072 547 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms