RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 HNRNPUQ00839 825 aaKnown RBP eCLIP7.98□□□□□ -1.13
SCFD1-217ENST00000555953 ZC3H12AQ5D1E8 599 aaKnown RBP7.98□□□□□ -1.13
SCFD1-217ENST00000555953 MAP1SQ66K74 1059 aaPredicted RBP7.98□□□□□ -1.13
SCFD1-217ENST00000555953 SPRED2Q7Z698 418 aa7.98□□□□□ -1.13
SCFD1-217ENST00000555953 PLD6Q8N2A8 252 aaKnown RBP7.98□□□□□ -1.13
SCFD1-217ENST00000555953 NME2P22392 152 aa7.97□□□□□ -1.13
SCFD1-217ENST00000555953 ZNF252P-AS1Q0IIN9 211 aa7.97□□□□□ -1.13
SCFD1-217ENST00000555953 BNIP3Q12983 259 aa7.97□□□□□ -1.13
SCFD1-217ENST00000555953 MPRIPQ6WCQ1 1025 aa7.97□□□□□ -1.13
SCFD1-217ENST00000555953 ERICH6Q7L0X2 663 aa7.97□□□□□ -1.13
SCFD1-217ENST00000555953 ISL2Q96A47 359 aa7.97□□□□□ -1.13
SCFD1-217ENST00000555953 STK11IPQ8N1F8 1099 aa7.96□□□□□ -1.14
SCFD1-217ENST00000555953 NETO1Q8TDF5 533 aa7.96□□□□□ -1.14
SCFD1-217ENST00000555953 GPBAR1Q8TDU6 330 aa7.96□□□□□ -1.14
SCFD1-217ENST00000555953 NECAB3Q96P71 396 aaPredicted RBP7.96□□□□□ -1.14
SCFD1-217ENST00000555953 SETDB2Q96T68 719 aa7.96□□□□□ -1.14
SCFD1-217ENST00000555953 DUSP23Q9BVJ7 150 aa7.96□□□□□ -1.14
SCFD1-217ENST00000555953 PCOLCE2Q9UKZ9 415 aa7.96□□□□□ -1.14
SCFD1-217ENST00000555953 BTBD11A6QL63 1104 aa7.95□□□□□ -1.14
SCFD1-217ENST00000555953 YBX3P16989 372 aaKnown RBP eCLIP7.95□□□□□ -1.14
SCFD1-217ENST00000555953 ERVK-24P63145 666 aa7.95□□□□□ -1.14
SCFD1-217ENST00000555953 PLCL1Q15111 1095 aa7.95□□□□□ -1.14
SCFD1-217ENST00000555953 TPTE2Q6XPS3 522 aa7.95□□□□□ -1.14
SCFD1-217ENST00000555953 EMILIN2Q9BXX0 1053 aa7.95□□□□□ -1.14
SCFD1-217ENST00000555953 CACNA2D2Q9NY47 1150 aa7.95□□□□□ -1.14
SCFD1-217ENST00000555953 PAGE1O75459 146 aa7.94□□□□□ -1.14
SCFD1-217ENST00000555953 RNF214Q8ND24 703 aa7.94□□□□□ -1.14
SCFD1-217ENST00000555953 GRIN3AQ8TCU5 1115 aa7.94□□□□□ -1.14
SCFD1-217ENST00000555953 MISP3Q96FF7 219 aa7.94□□□□□ -1.14
SCFD1-217ENST00000555953 CBX8Q9HC52 389 aa7.94□□□□□ -1.14
SCFD1-217ENST00000555953 ENC1O14682 589 aa7.93□□□□□ -1.14
SCFD1-217ENST00000555953 JUNBP17275 347 aaPredicted RBP7.93□□□□□ -1.14
SCFD1-217ENST00000555953 BMP6P22004 513 aa7.93□□□□□ -1.14
SCFD1-217ENST00000555953 GSTT1P30711 240 aa7.93□□□□□ -1.14
SCFD1-217ENST00000555953 MAPK8P45983 427 aa7.93□□□□□ -1.14
SCFD1-217ENST00000555953 FMR1Q06787 632 aaKnown RBP eCLIP7.93□□□□□ -1.14
SCFD1-217ENST00000555953 ZNF792Q3KQV3 632 aa7.93□□□□□ -1.14
SCFD1-217ENST00000555953 OGFOD2Q6N063 350 aa7.93□□□□□ -1.14
SCFD1-217ENST00000555953 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.93□□□□□ -1.14
SCFD1-217ENST00000555953 TOP6BLQ8N6T0 577 aa7.93□□□□□ -1.14
SCFD1-217ENST00000555953 ASIC4Q96FT7 647 aa7.93□□□□□ -1.14
SCFD1-217ENST00000555953 ACSBG1Q96GR2 724 aa7.93□□□□□ -1.14
SCFD1-217ENST00000555953 OSBPL7Q9BZF2 842 aa7.93□□□□□ -1.14
SCFD1-217ENST00000555953 SSU72Q9NP77 194 aaKnown RBP7.93□□□□□ -1.14
SCFD1-217ENST00000555953 FBXO24O75426 580 aa7.92□□□□□ -1.14
SCFD1-217ENST00000555953 PAPLNO95428 1278 aa7.92□□□□□ -1.14
SCFD1-217ENST00000555953 CD8BP10966 210 aa7.92□□□□□ -1.14
SCFD1-217ENST00000555953 CD96P40200 585 aa7.92□□□□□ -1.14
SCFD1-217ENST00000555953 OXCT1P55809 520 aa7.92□□□□□ -1.14
SCFD1-217ENST00000555953 FBF1Q8TES7 1133 aa7.92□□□□□ -1.14
SCFD1-217ENST00000555953 CSADQ9Y600 493 aa7.92□□□□□ -1.14
SCFD1-217ENST00000555953 NTF4P34130 210 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 PPM1JQ5JR12 505 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 RASIP1Q5U651 963 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 UBE3DQ7Z6J8 389 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 CEP44Q9C0F1 390 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 SRCIN1Q9C0H9 1055 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 MKNK2Q9HBH9 465 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 VAV3Q9UKW4 847 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 WWC3Q9ULE0 1092 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 PPM1HQ9ULR3 514 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 TIMELESSQ9UNS1 1208 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 PLAGL2Q9UPG8 496 aa7.91□□□□□ -1.14
SCFD1-217ENST00000555953 DCDC2CA8MYV0 355 aa7.9□□□□□ -1.14
SCFD1-217ENST00000555953 CEACAM5P06731 702 aa7.9□□□□□ -1.14
SCFD1-217ENST00000555953 FUT4P22083 530 aa7.9□□□□□ -1.14
SCFD1-217ENST00000555953 PRKCQQ04759 706 aa7.9□□□□□ -1.14
SCFD1-217ENST00000555953 IFI16Q16666 785 aaKnown RBP7.9□□□□□ -1.14
SCFD1-217ENST00000555953 HEXIM2Q96MH2 286 aaKnown RBP7.9□□□□□ -1.14
SCFD1-217ENST00000555953 IVNS1ABPQ9Y6Y0 642 aa7.9□□□□□ -1.14
SCFD1-217ENST00000555953 TRIM37O94972 964 aa7.89□□□□□ -1.15
SCFD1-217ENST00000555953 ARHGAP27Q6ZUM4 889 aa7.89□□□□□ -1.15
SCFD1-217ENST00000555953 FAM214BQ7L5A3 538 aa7.89□□□□□ -1.15
SCFD1-217ENST00000555953 ZSCAN29Q8IWY8 852 aaPredicted RBP7.89□□□□□ -1.15
SCFD1-217ENST00000555953 ASB16Q96NS5 453 aa7.89□□□□□ -1.15
SCFD1-217ENST00000555953 MBNL3Q9NUK0 354 aaKnown RBP7.89□□□□□ -1.15
SCFD1-217ENST00000555953 ADAMTS6Q9UKP5 1117 aa7.89□□□□□ -1.15
SCFD1-217ENST00000555953 SAMM50Q9Y512 469 aa7.89□□□□□ -1.15
SCFD1-217ENST00000555953 ITIH2P19823 946 aa7.88□□□□□ -1.15
SCFD1-217ENST00000555953 RING1Q06587 406 aa7.88□□□□□ -1.15
SCFD1-217ENST00000555953 AOC3Q16853 763 aa7.88□□□□□ -1.15
SCFD1-217ENST00000555953 ALG1LQ6GMV1 187 aa7.88□□□□□ -1.15
SCFD1-217ENST00000555953 LLGL2Q6P1M3 1020 aa7.88□□□□□ -1.15
SCFD1-217ENST00000555953 C12orf40Q86WS4 652 aa7.88□□□□□ -1.15
SCFD1-217ENST00000555953 HRASLS5Q96KN8 279 aa7.88□□□□□ -1.15
SCFD1-217ENST00000555953 TMEM265A0A087WTH1 108 aa7.87□□□□□ -1.15
SCFD1-217ENST00000555953 RNASE1P07998 156 aaKnown RBP7.87□□□□□ -1.15
SCFD1-217ENST00000555953 CELA3AP09093 270 aa7.87□□□□□ -1.15
SCFD1-217ENST00000555953 ZBTB37Q5TC79 503 aa7.87□□□□□ -1.15
SCFD1-217ENST00000555953 POU5F2Q8N7G0 328 aa7.87□□□□□ -1.15
SCFD1-217ENST00000555953 ANKRD24Q8TF21 1146 aa7.87□□□□□ -1.15
SCFD1-217ENST00000555953 TNKS2Q9H2K2 1166 aa7.87□□□□□ -1.15
SCFD1-217ENST00000555953 RC3H2Q9HBD1 1191 aaKnown RBP7.87□□□□□ -1.15
SCFD1-217ENST00000555953 CARMIL2Q6F5E8 1435 aa7.86□□□□□ -1.15
SCFD1-217ENST00000555953 GIPC1O14908 333 aa7.86□□□□□ -1.15
SCFD1-217ENST00000555953 PRDM10Q9NQV6 1147 aa7.86□□□□□ -1.15
SCFD1-217ENST00000555953 PICK1Q9NRD5 415 aa7.86□□□□□ -1.15
SCFD1-217ENST00000555953 PCDHA4Q9UN74 947 aa7.86□□□□□ -1.15
SCFD1-217ENST00000555953 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.86□□□□□ -1.15
SCFD1-217ENST00000555953 KRTAP4-8A0A0G2JLE6 195 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms