RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 ADAM23O75077 832 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 AOC2O75106 756 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 ALX3O95076 343 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 RPL6Q02878 288 aaKnown RBP8.99□□□□□ -0.97
LINC00643-204ENST00000555934 MPP2Q14168 576 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 PLA2G4EQ3MJ16 856 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 DIEXFQ68CQ4 756 aaKnown RBP8.99□□□□□ -0.97
LINC00643-204ENST00000555934 CCDC81Q6ZN84 652 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 KIAA1211Q6ZU35 1233 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 RASGRP4Q8TDF6 673 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 ELMO3Q96BJ8 720 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 PLPPR2Q96GM1 343 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 BRMS1Q9HCU9 246 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 CACNA2D2Q9NY47 1150 aa8.99□□□□□ -0.97
LINC00643-204ENST00000555934 APBA3O96018 575 aa8.98□□□□□ -0.97
LINC00643-204ENST00000555934 GTF2F1P35269 517 aaKnown RBP eCLIP8.98□□□□□ -0.97
LINC00643-204ENST00000555934 SF3A1Q15459 793 aaKnown RBP8.98□□□□□ -0.97
LINC00643-204ENST00000555934 CWF19L2Q2TBE0 894 aaKnown RBP8.98□□□□□ -0.97
LINC00643-204ENST00000555934 EXOSC6Q5RKV6 272 aaKnown RBP8.98□□□□□ -0.97
LINC00643-204ENST00000555934 IGF2-ASQ6U949 168 aa8.98□□□□□ -0.97
LINC00643-204ENST00000555934 GK5Q6ZS86 529 aa8.98□□□□□ -0.97
LINC00643-204ENST00000555934 C12orf40Q86WS4 652 aa8.98□□□□□ -0.97
LINC00643-204ENST00000555934 MCF2L2Q86YR7 1114 aa8.98□□□□□ -0.97
LINC00643-204ENST00000555934 DHX38Q92620 1227 aaKnown RBP8.98□□□□□ -0.97
LINC00643-204ENST00000555934 NACC1Q96RE7 527 aa8.98□□□□□ -0.97
LINC00643-204ENST00000555934 USP21Q9UK80 565 aa8.98□□□□□ -0.97
LINC00643-204ENST00000555934 PPT2Q9UMR5 302 aa8.98□□□□□ -0.97
LINC00643-204ENST00000555934 PRAMEF27A3QJZ7 478 aa8.97□□□□□ -0.97
LINC00643-204ENST00000555934 ATP2B1P20020 1258 aa8.97□□□□□ -0.97
LINC00643-204ENST00000555934 KIF4BQ2VIQ3 1234 aa8.97□□□□□ -0.97
LINC00643-204ENST00000555934 HP1BP3Q5SSJ5 553 aaPredicted RBP8.97□□□□□ -0.97
LINC00643-204ENST00000555934 XP32Q5T750 250 aa8.97□□□□□ -0.97
LINC00643-204ENST00000555934 NUTM2GQ5VZR2 741 aa8.97□□□□□ -0.97
LINC00643-204ENST00000555934 FBXW10Q5XX13 1052 aa8.97□□□□□ -0.97
LINC00643-204ENST00000555934 REC114Q7Z4M0 266 aa8.97□□□□□ -0.97
LINC00643-204ENST00000555934 MRPL18Q9H0U6 180 aaKnown RBP8.97□□□□□ -0.97
LINC00643-204ENST00000555934 AP4E1Q9UPM8 1137 aa8.97□□□□□ -0.97
LINC00643-204ENST00000555934 MSTNO14793 375 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 SLFN14P0C7P3 912 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 DRD2P14416 443 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.96□□□□□ -0.98
LINC00643-204ENST00000555934 SLITRK4Q8IW52 837 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 LENG1Q96BZ8 264 aaPredicted RBP8.96□□□□□ -0.98
LINC00643-204ENST00000555934 SPOCK3Q9BQ16 436 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 LRRC3Q9BY71 257 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 TMPRSS13Q9BYE2 586 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 RNF208Q9H0X6 261 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 PICK1Q9NRD5 415 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 PPP1R9AQ9ULJ8 1098 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 POLR3KQ9Y2Y1 108 aaPredicted RBP8.96□□□□□ -0.98
LINC00643-204ENST00000555934 CORINQ9Y5Q5 1042 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 MRVI1Q9Y6F6 885 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 ROBO2Q9HCK4 1378 aa8.96□□□□□ -0.98
LINC00643-204ENST00000555934 C9orf172C9J069 976 aa8.95□□□□□ -0.98
LINC00643-204ENST00000555934 SSBP05455 408 aaKnown RBP eCLIP8.95□□□□□ -0.98
LINC00643-204ENST00000555934 FGRP09769 529 aa8.95□□□□□ -0.98
LINC00643-204ENST00000555934 HNRNPUQ00839 825 aaKnown RBP eCLIP8.95□□□□□ -0.98
LINC00643-204ENST00000555934 CLCQ05315 142 aa8.95□□□□□ -0.98
LINC00643-204ENST00000555934 SCARA3Q6AZY7 606 aa8.95□□□□□ -0.98
LINC00643-204ENST00000555934 HDXQ7Z353 690 aa8.95□□□□□ -0.98
LINC00643-204ENST00000555934 CPLX3Q8WVH0 158 aa8.95□□□□□ -0.98
LINC00643-204ENST00000555934 SPATA32Q96LK8 384 aa8.95□□□□□ -0.98
LINC00643-204ENST00000555934 GMLQ99445 158 aa8.95□□□□□ -0.98
LINC00643-204ENST00000555934 PCDHB14Q9Y5E9 798 aa8.95□□□□□ -0.98
LINC00643-204ENST00000555934 TMPRSS2O15393 492 aa8.94□□□□□ -0.98
LINC00643-204ENST00000555934 PROCP04070 461 aa8.94□□□□□ -0.98
LINC00643-204ENST00000555934 CHRNA4P43681 627 aa8.94□□□□□ -0.98
LINC00643-204ENST00000555934 ID3Q02535 119 aa8.94□□□□□ -0.98
LINC00643-204ENST00000555934 ZC3H12AQ5D1E8 599 aaKnown RBP8.94□□□□□ -0.98
LINC00643-204ENST00000555934 PPM1JQ5JR12 505 aa8.94□□□□□ -0.98
LINC00643-204ENST00000555934 CD163Q86VB7 1156 aa8.94□□□□□ -0.98
LINC00643-204ENST00000555934 C12orf50Q8NA57 414 aaPredicted RBP8.94□□□□□ -0.98
LINC00643-204ENST00000555934 SEC16BQ96JE7 1060 aa8.94□□□□□ -0.98
LINC00643-204ENST00000555934 FERD3LQ96RJ6 166 aa8.94□□□□□ -0.98
LINC00643-204ENST00000555934 PCDHGC5Q9Y5F6 944 aa8.94□□□□□ -0.98
LINC00643-204ENST00000555934 F8W735 103 aaPredicted RBP8.93□□□□□ -0.98
LINC00643-204ENST00000555934 GFRA2O00451 464 aa8.93□□□□□ -0.98
LINC00643-204ENST00000555934 SOX9P48436 509 aa8.93□□□□□ -0.98
LINC00643-204ENST00000555934 ZNF165P49910 485 aa8.93□□□□□ -0.98
LINC00643-204ENST00000555934 NRG1Q02297 640 aaPredicted RBP8.93□□□□□ -0.98
LINC00643-204ENST00000555934 FDX2Q6P4F2 183 aa8.93□□□□□ -0.98
LINC00643-204ENST00000555934 DYMQ7RTS9 669 aa8.93□□□□□ -0.98
LINC00643-204ENST00000555934 ANAPC16Q96DE5 110 aa8.93□□□□□ -0.98
LINC00643-204ENST00000555934 DNAJC2Q99543 621 aaKnown RBP8.93□□□□□ -0.98
LINC00643-204ENST00000555934 CYP4F12Q9HCS2 524 aa8.93□□□□□ -0.98
LINC00643-204ENST00000555934 HIF3AQ9Y2N7 669 aa8.93□□□□□ -0.98
LINC00643-204ENST00000555934 C1QTNF9BB2RNN3 333 aa8.92□□□□□ -0.98
LINC00643-204ENST00000555934 ADH5P11766 374 aa8.92□□□□□ -0.98
LINC00643-204ENST00000555934 AKTIPQ9H8T0 292 aa8.92□□□□□ -0.98
LINC00643-204ENST00000555934 SNCAIPQ9Y6H5 919 aa8.92□□□□□ -0.98
LINC00643-204ENST00000555934 MEGF11A6BM72 1044 aa8.91□□□□□ -0.98
LINC00643-204ENST00000555934 GLB1P16278 677 aa8.91□□□□□ -0.98
LINC00643-204ENST00000555934 GRK4P32298 578 aa8.91□□□□□ -0.98
LINC00643-204ENST00000555934 SOX4Q06945 474 aaPredicted RBP8.91□□□□□ -0.98
LINC00643-204ENST00000555934 ADGRE1Q14246 886 aa8.91□□□□□ -0.98
LINC00643-204ENST00000555934 MBTPS1Q14703 1052 aa8.91□□□□□ -0.98
LINC00643-204ENST00000555934 CYFIP1Q7L576 1253 aa8.91□□□□□ -0.98
LINC00643-204ENST00000555934 FANCD2OSQ96PS1 177 aa8.91□□□□□ -0.98
LINC00643-204ENST00000555934 SRRTQ9BXP5 876 aaKnown RBP8.91□□□□□ -0.98
LINC00643-204ENST00000555934 CRIM1Q9NZV1 1036 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms