RNA–Protein interactions for RNA: ENST00000555806.5

NEDD1-208, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 565 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-208ENST00000555806 ZNF512BQ96KM6 892 aaPredicted RBP22.54■■□□□ 1.2
NEDD1-208ENST00000555806 NOL10Q9BSC4 688 aaKnown RBP22.54■■□□□ 1.2
NEDD1-208ENST00000555806 CCL15-CCL14A0A0B4J2E2 113 aa22.53■■□□□ 1.2
NEDD1-208ENST00000555806 TESPA1A2RU30 521 aaPredicted RBP22.53■■□□□ 1.2
NEDD1-208ENST00000555806 APBB1O00213 710 aa22.53■■□□□ 1.2
NEDD1-208ENST00000555806 FKTNO75072 461 aa22.53■■□□□ 1.2
NEDD1-208ENST00000555806 ZAP70P43403 619 aa22.53■■□□□ 1.2
NEDD1-208ENST00000555806 RHBDL3P58872 404 aa22.53■■□□□ 1.2
NEDD1-208ENST00000555806 PDE3AQ14432 1141 aa22.53■■□□□ 1.2
NEDD1-208ENST00000555806 CCL15Q16663 113 aa22.53■■□□□ 1.2
NEDD1-208ENST00000555806 NOM1Q5C9Z4 860 aaKnown RBP22.53■■□□□ 1.2
NEDD1-208ENST00000555806 NAA16Q6N069 864 aaPredicted RBP22.53■■□□□ 1.2
NEDD1-208ENST00000555806 MS4A4AQ96JQ5 239 aa22.53■■□□□ 1.2
NEDD1-208ENST00000555806 PTPN18Q99952 460 aa22.53■■□□□ 1.2
NEDD1-208ENST00000555806 IL1RAPL2Q9NP60 686 aa22.53■■□□□ 1.2
NEDD1-208ENST00000555806 DDX4Q9NQI0 724 aaKnown RBP22.53■■□□□ 1.2
NEDD1-208ENST00000555806 CYP2E1P05181 493 aaPredicted RBP22.52■■□□□ 1.2
NEDD1-208ENST00000555806 RHPN1Q8TCX5 695 aa22.52■■□□□ 1.2
NEDD1-208ENST00000555806 BRI3BPQ8WY22 251 aa22.52■■□□□ 1.2
NEDD1-208ENST00000555806 PPIL2Q13356 520 aa22.51■■□□□ 1.19
NEDD1-208ENST00000555806 SIRT2Q8IXJ6 389 aa22.51■■□□□ 1.19
NEDD1-208ENST00000555806 BCL11AQ9H165 835 aa22.51■■□□□ 1.19
NEDD1-208ENST00000555806 ZNF112Q9UJU3 913 aa22.51■■□□□ 1.19
NEDD1-208ENST00000555806 DDTLA6NHG4 134 aaPredicted RBP22.5■■□□□ 1.19
NEDD1-208ENST00000555806 MAP4K4O95819 1239 aaPredicted RBP22.5■■□□□ 1.19
NEDD1-208ENST00000555806 CRHR2Q13324 411 aa22.5■■□□□ 1.19
NEDD1-208ENST00000555806 SH3BP5LQ7L8J4 393 aa22.5■■□□□ 1.19
NEDD1-208ENST00000555806 TEX11Q8IYF3 940 aa22.5■■□□□ 1.19
NEDD1-208ENST00000555806 KIF1BPQ96EK5 621 aa22.5■■□□□ 1.19
NEDD1-208ENST00000555806 PIH1D3Q9NQM4 214 aaKnown RBP22.5■■□□□ 1.19
NEDD1-208ENST00000555806 ATRNL1Q5VV63 1379 aa22.5■■□□□ 1.19
NEDD1-208ENST00000555806 IRF6O14896 467 aa22.49■■□□□ 1.19
NEDD1-208ENST00000555806 BAG3O95817 575 aa22.49■■□□□ 1.19
NEDD1-208ENST00000555806 CETPP11597 493 aa22.49■■□□□ 1.19
NEDD1-208ENST00000555806 PPATQ06203 517 aa22.49■■□□□ 1.19
NEDD1-208ENST00000555806 SNAPC2Q13487 334 aa22.49■■□□□ 1.19
NEDD1-208ENST00000555806 CLASRPQ8N2M8 674 aaKnown RBP22.49■■□□□ 1.19
NEDD1-208ENST00000555806 AATFQ9NY61 560 aaKnown RBP eCLIP22.49■■□□□ 1.19
NEDD1-208ENST00000555806 TAF1CQ15572 869 aaPredicted RBP22.48■■□□□ 1.19
NEDD1-208ENST00000555806 NOL9Q5SY16 702 aaKnown RBP22.48■■□□□ 1.19
NEDD1-208ENST00000555806 MYO5AQ9Y4I1 1855 aaKnown RBP22.47■■□□□ 1.19
NEDD1-208ENST00000555806 NPM3O75607 178 aaKnown RBP22.47■■□□□ 1.19
NEDD1-208ENST00000555806 IDH1O75874 414 aaKnown RBP22.47■■□□□ 1.19
NEDD1-208ENST00000555806 PLCG2P16885 1265 aa22.47■■□□□ 1.19
NEDD1-208ENST00000555806 SH3RF3Q8TEJ3 882 aaPredicted RBP22.47■■□□□ 1.19
NEDD1-208ENST00000555806 NDUFB9Q9Y6M9 179 aa22.47■■□□□ 1.19
NEDD1-208ENST00000555806 RAB11FIP3O75154 756 aa22.46■■□□□ 1.19
NEDD1-208ENST00000555806 IFIT2P09913 472 aaKnown RBP22.46■■□□□ 1.19
NEDD1-208ENST00000555806 FAM43AQ8N2R8 423 aa22.46■■□□□ 1.19
NEDD1-208ENST00000555806 OSBPL5Q9H0X9 879 aaPredicted RBP22.46■■□□□ 1.19
NEDD1-208ENST00000555806 ZFYVE28Q9HCC9 887 aa22.46■■□□□ 1.19
NEDD1-208ENST00000555806 PICK1Q9NRD5 415 aa22.46■■□□□ 1.19
NEDD1-208ENST00000555806 PHF20L1A8MW92 1017 aa22.45■■□□□ 1.18
NEDD1-208ENST00000555806 IGSF3O75054 1194 aa22.45■■□□□ 1.18
NEDD1-208ENST00000555806 SLURP2P0DP57 97 aa22.45■■□□□ 1.18
NEDD1-208ENST00000555806 PKN2Q16513 984 aaKnown RBP22.45■■□□□ 1.18
NEDD1-208ENST00000555806 ADGRA1Q86SQ6 560 aa22.45■■□□□ 1.18
NEDD1-208ENST00000555806 YTHDC1Q96MU7 727 aaKnown RBP22.45■■□□□ 1.18
NEDD1-208ENST00000555806 COL2A1P02458 1487 aaPredicted RBP22.44■■□□□ 1.18
NEDD1-208ENST00000555806 CYP7A1P22680 504 aa22.44■■□□□ 1.18
NEDD1-208ENST00000555806 SCYL3Q8IZE3 742 aa22.44■■□□□ 1.18
NEDD1-208ENST00000555806 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.44■■□□□ 1.18
NEDD1-208ENST00000555806 BTBD19C9JJ37 291 aa22.43■■□□□ 1.18
NEDD1-208ENST00000555806 PPP4CP60510 307 aa22.43■■□□□ 1.18
NEDD1-208ENST00000555806 MAP3K10Q02779 954 aa22.43■■□□□ 1.18
NEDD1-208ENST00000555806 MAP3K12Q12852 859 aa22.43■■□□□ 1.18
NEDD1-208ENST00000555806 MAGEB6Q8N7X4 407 aa22.43■■□□□ 1.18
NEDD1-208ENST00000555806 TGFBRAP1Q8WUH2 860 aa22.43■■□□□ 1.18
NEDD1-208ENST00000555806 ERO1AQ96HE7 468 aa22.43■■□□□ 1.18
NEDD1-208ENST00000555806 ANTXR1Q9H6X2 564 aa22.43■■□□□ 1.18
NEDD1-208ENST00000555806 KCNH4Q9UQ05 1017 aa22.43■■□□□ 1.18
NEDD1-208ENST00000555806 FAM196BA6NMK8 535 aa22.42■■□□□ 1.18
NEDD1-208ENST00000555806 SP3Q02447 781 aa22.42■■□□□ 1.18
NEDD1-208ENST00000555806 MAPKAPK5Q8IW41 473 aa22.42■■□□□ 1.18
NEDD1-208ENST00000555806 CD99L2Q8TCZ2 262 aa22.42■■□□□ 1.18
NEDD1-208ENST00000555806 ZCCHC17Q9NP64 241 aaKnown RBP22.42■■□□□ 1.18
NEDD1-208ENST00000555806 HPS5Q9UPZ3 1129 aa22.42■■□□□ 1.18
NEDD1-208ENST00000555806 TRIM17Q9Y577 477 aa22.42■■□□□ 1.18
NEDD1-208ENST00000555806 DOCK1Q14185 1865 aa22.42■■□□□ 1.18
NEDD1-208ENST00000555806 TBC1D12O60347 775 aa22.41■■□□□ 1.18
NEDD1-208ENST00000555806 CTNND1O60716 968 aaKnown RBP22.41■■□□□ 1.18
NEDD1-208ENST00000555806 DYNLL1P63167 89 aaKnown RBP22.41■■□□□ 1.18
NEDD1-208ENST00000555806 FBXO46Q6PJ61 603 aaPredicted RBP22.41■■□□□ 1.18
NEDD1-208ENST00000555806 ZHX2Q9Y6X8 837 aa22.41■■□□□ 1.18
NEDD1-208ENST00000555806 FLT1P17948 1338 aa22.4■■□□□ 1.18
NEDD1-208ENST00000555806 PTPRAP18433 802 aa22.4■■□□□ 1.18
NEDD1-208ENST00000555806 TTF1Q15361 905 aaPredicted RBP22.4■■□□□ 1.18
NEDD1-208ENST00000555806 MIGA1Q8NAN2 632 aa22.4■■□□□ 1.18
NEDD1-208ENST00000555806 DNAJC2Q99543 621 aaKnown RBP22.4■■□□□ 1.18
NEDD1-208ENST00000555806 CDK5RAP2Q96SN8 1893 aa22.39■■□□□ 1.18
NEDD1-208ENST00000555806 CXCL11O14625 94 aa22.39■■□□□ 1.17
NEDD1-208ENST00000555806 OTOP1Q7RTM1 612 aa22.39■■□□□ 1.17
NEDD1-208ENST00000555806 ANKRD23Q86SG2 305 aa22.39■■□□□ 1.17
NEDD1-208ENST00000555806 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.39■■□□□ 1.17
NEDD1-208ENST00000555806 DHX36Q9H2U1 1008 aaKnown RBP22.39■■□□□ 1.17
NEDD1-208ENST00000555806 CERS3Q8IU89 383 aa22.38■■□□□ 1.17
NEDD1-208ENST00000555806 LRRCC1Q9C099 1032 aa22.38■■□□□ 1.17
NEDD1-208ENST00000555806 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.38■■□□□ 1.17
NEDD1-208ENST00000555806 PI4KBQ9UBF8 816 aa22.38■■□□□ 1.17
NEDD1-208ENST00000555806 FOCADQ5VW36 1801 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms