RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 ZNF341Q9BYN7 854 aa25.04■■□□□ 1.6
VTI1B-205ENST00000555543 PCDHB15Q9Y5E8 787 aa25.04■■□□□ 1.6
VTI1B-205ENST00000555543 CSADQ9Y600 493 aa25.04■■□□□ 1.6
VTI1B-205ENST00000555543 DDTLA6NHG4 134 aaPredicted RBP25.03■■□□□ 1.6
VTI1B-205ENST00000555543 MANSC4A6NHS7 340 aaPredicted RBP25.03■■□□□ 1.6
VTI1B-205ENST00000555543 SMARCA5O60264 1052 aaPredicted RBP25.03■■□□□ 1.6
VTI1B-205ENST00000555543 SH3RF3Q8TEJ3 882 aaPredicted RBP25.03■■□□□ 1.6
VTI1B-205ENST00000555543 CASP8AP2Q9UKL3 1982 aa25.03■■□□□ 1.6
VTI1B-205ENST00000555543 IDH1O75874 414 aaKnown RBP25.02■■□□□ 1.6
VTI1B-205ENST00000555543 SLURP2P0DP57 97 aa25.02■■□□□ 1.6
VTI1B-205ENST00000555543 INPP5BP32019 993 aa25.02■■□□□ 1.6
VTI1B-205ENST00000555543 LRRCC1Q9C099 1032 aa25.02■■□□□ 1.6
VTI1B-205ENST00000555543 AATFQ9NY61 560 aaKnown RBP eCLIP25.02■■□□□ 1.6
VTI1B-205ENST00000555543 ZNF112Q9UJU3 913 aa25.01■■□□□ 1.59
VTI1B-205ENST00000555543 SPDYE5A6NIY4 337 aa25■■□□□ 1.59
VTI1B-205ENST00000555543 IGF2BP3O00425 579 aaKnown RBP eCLIP25■■□□□ 1.59
VTI1B-205ENST00000555543 MAP4K4O95819 1239 aaPredicted RBP25■■□□□ 1.59
VTI1B-205ENST00000555543 ZSCAN29Q8IWY8 852 aaPredicted RBP25■■□□□ 1.59
VTI1B-205ENST00000555543 TEX11Q8IYF3 940 aa25■■□□□ 1.59
VTI1B-205ENST00000555543 OTUD5Q96G74 571 aa25■■□□□ 1.59
VTI1B-205ENST00000555543 DCTPP1Q9H773 170 aa25■■□□□ 1.59
VTI1B-205ENST00000555543 IGSF3O75054 1194 aa24.99■■□□□ 1.59
VTI1B-205ENST00000555543 NPM3O75607 178 aaKnown RBP24.99■■□□□ 1.59
VTI1B-205ENST00000555543 TBC1D8O95759 1140 aa24.99■■□□□ 1.59
VTI1B-205ENST00000555543 IFNL1Q8IU54 200 aa24.99■■□□□ 1.59
VTI1B-205ENST00000555543 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.99■■□□□ 1.59
VTI1B-205ENST00000555543 MS4A4AQ96JQ5 239 aa24.99■■□□□ 1.59
VTI1B-205ENST00000555543 CDK5RAP2Q96SN8 1893 aa24.99■■□□□ 1.59
VTI1B-205ENST00000555543 NOL10Q9BSC4 688 aaKnown RBP24.99■■□□□ 1.59
VTI1B-205ENST00000555543 COL2A1P02458 1487 aaPredicted RBP24.98■■□□□ 1.59
VTI1B-205ENST00000555543 CYP7A1P22680 504 aa24.98■■□□□ 1.59
VTI1B-205ENST00000555543 PPP4CP60510 307 aa24.98■■□□□ 1.59
VTI1B-205ENST00000555543 MAGEB6Q8N7X4 407 aa24.98■■□□□ 1.59
VTI1B-205ENST00000555543 EDC3Q96F86 508 aaKnown RBP24.98■■□□□ 1.59
VTI1B-205ENST00000555543 DNAJC2Q99543 621 aaKnown RBP24.98■■□□□ 1.59
VTI1B-205ENST00000555543 OSBPL5Q9H0X9 879 aaPredicted RBP24.98■■□□□ 1.59
VTI1B-205ENST00000555543 R3HDMLQ9H3Y0 253 aa24.98■■□□□ 1.59
VTI1B-205ENST00000555543 BAG3O95817 575 aa24.97■■□□□ 1.59
VTI1B-205ENST00000555543 INHBEP58166 350 aa24.97■■□□□ 1.59
VTI1B-205ENST00000555543 DYNLL1P63167 89 aaKnown RBP24.97■■□□□ 1.59
VTI1B-205ENST00000555543 PTPN18Q99952 460 aa24.97■■□□□ 1.59
VTI1B-205ENST00000555543 FOCADQ5VW36 1801 aa24.97■■□□□ 1.59
VTI1B-205ENST00000555543 TESPA1A2RU30 521 aaPredicted RBP24.96■■□□□ 1.59
VTI1B-205ENST00000555543 PHF20L1A8MW92 1017 aa24.96■■□□□ 1.59
VTI1B-205ENST00000555543 GOLIM4O00461 696 aa24.96■■□□□ 1.59
VTI1B-205ENST00000555543 MAP3K10Q02779 954 aa24.96■■□□□ 1.59
VTI1B-205ENST00000555543 MAP3K12Q12852 859 aa24.96■■□□□ 1.59
VTI1B-205ENST00000555543 ERO1BQ86YB8 467 aa24.96■■□□□ 1.59
VTI1B-205ENST00000555543 PLCG2P16885 1265 aa24.95■■□□□ 1.58
VTI1B-205ENST00000555543 ATP5JP18859 108 aa24.95■■□□□ 1.58
VTI1B-205ENST00000555543 NOL9Q5SY16 702 aaKnown RBP24.95■■□□□ 1.58
VTI1B-205ENST00000555543 MIGA1Q8NAN2 632 aa24.95■■□□□ 1.58
VTI1B-205ENST00000555543 TGFBRAP1Q8WUH2 860 aa24.95■■□□□ 1.58
VTI1B-205ENST00000555543 BRI3BPQ8WY22 251 aa24.95■■□□□ 1.58
VTI1B-205ENST00000555543 CFHR5Q9BXR6 569 aa24.95■■□□□ 1.58
VTI1B-205ENST00000555543 BOLA2Q9H3K6 86 aa24.95■■□□□ 1.58
VTI1B-205ENST00000555543 SIPA1L1O43166 1804 aa24.95■■□□□ 1.58
VTI1B-205ENST00000555543 FAM196BA6NMK8 535 aa24.94■■□□□ 1.58
VTI1B-205ENST00000555543 IRF6O14896 467 aa24.94■■□□□ 1.58
VTI1B-205ENST00000555543 TTF1Q15361 905 aaPredicted RBP24.94■■□□□ 1.58
VTI1B-205ENST00000555543 MAPKAPK5Q8IW41 473 aa24.94■■□□□ 1.58
VTI1B-205ENST00000555543 FLT1P17948 1338 aa24.93■■□□□ 1.58
VTI1B-205ENST00000555543 ALDH1A1P00352 501 aa24.93■■□□□ 1.58
VTI1B-205ENST00000555543 GTF2A2P52657 109 aa24.93■■□□□ 1.58
VTI1B-205ENST00000555543 PPIL2Q13356 520 aa24.93■■□□□ 1.58
VTI1B-205ENST00000555543 CCL15-CCL14A0A0B4J2E2 113 aa24.92■■□□□ 1.58
VTI1B-205ENST00000555543 PDE6AP16499 860 aa24.92■■□□□ 1.58
VTI1B-205ENST00000555543 CCL15Q16663 113 aa24.92■■□□□ 1.58
VTI1B-205ENST00000555543 HAUS7Q99871 368 aa24.92■■□□□ 1.58
VTI1B-205ENST00000555543 PAG1Q9NWQ8 432 aa24.92■■□□□ 1.58
VTI1B-205ENST00000555543 GPR25O00155 361 aa24.91■■□□□ 1.58
VTI1B-205ENST00000555543 PPATQ06203 517 aa24.91■■□□□ 1.58
VTI1B-205ENST00000555543 SLC9C2Q5TAH2 1124 aa24.91■■□□□ 1.58
VTI1B-205ENST00000555543 ZNF296Q8WUU4 475 aaPredicted RBP24.91■■□□□ 1.58
VTI1B-205ENST00000555543 DOCK1Q14185 1865 aa24.91■■□□□ 1.58
VTI1B-205ENST00000555543 TBC1D12O60347 775 aa24.9■■□□□ 1.58
VTI1B-205ENST00000555543 TMED8Q6PL24 325 aaPredicted RBP24.9■■□□□ 1.58
VTI1B-205ENST00000555543 SCYL3Q8IZE3 742 aa24.9■■□□□ 1.58
VTI1B-205ENST00000555543 TCRBV5S4A2TA0A5A2 114 aa24.89■■□□□ 1.58
VTI1B-205ENST00000555543 CRHR2Q13324 411 aa24.89■■□□□ 1.58
VTI1B-205ENST00000555543 SNAPC2Q13487 334 aa24.89■■□□□ 1.58
VTI1B-205ENST00000555543 NOM1Q5C9Z4 860 aaKnown RBP24.89■■□□□ 1.58
VTI1B-205ENST00000555543 TSHZ3Q63HK5 1081 aa24.89■■□□□ 1.58
VTI1B-205ENST00000555543 FAM43AQ8N2R8 423 aa24.89■■□□□ 1.58
VTI1B-205ENST00000555543 RIOK1Q9BRS2 568 aaKnown RBP24.89■■□□□ 1.58
VTI1B-205ENST00000555543 MCOLN1Q9GZU1 580 aa24.89■■□□□ 1.58
VTI1B-205ENST00000555543 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.89■■□□□ 1.58
VTI1B-205ENST00000555543 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.89■■□□□ 1.58
VTI1B-205ENST00000555543 ZNF532Q9HCE3 1301 aa24.88■■□□□ 1.57
VTI1B-205ENST00000555543 CAPN15O75808 1086 aa24.88■■□□□ 1.57
VTI1B-205ENST00000555543 DGKZQ13574 1117 aa24.88■■□□□ 1.57
VTI1B-205ENST00000555543 SLFNL1Q499Z3 407 aa24.88■■□□□ 1.57
VTI1B-205ENST00000555543 OTUD7BQ6GQQ9 843 aa24.88■■□□□ 1.57
VTI1B-205ENST00000555543 ECHDC1Q9NTX5 307 aa24.88■■□□□ 1.57
VTI1B-205ENST00000555543 SAP30BPQ9UHR5 308 aaKnown RBP24.88■■□□□ 1.57
VTI1B-205ENST00000555543 PALD1Q9ULE6 856 aa24.88■■□□□ 1.57
VTI1B-205ENST00000555543 KCNH4Q9UQ05 1017 aa24.88■■□□□ 1.57
VTI1B-205ENST00000555543 CTNND1O60716 968 aaKnown RBP24.87■■□□□ 1.57
VTI1B-205ENST00000555543 CETPP11597 493 aa24.87■■□□□ 1.57
VTI1B-205ENST00000555543 PTPRAP18433 802 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms