RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 DDR1Q08345 913 aa17.85■□□□□ 0.45
SYNE3-203ENST00000554873 NEDD9Q14511 834 aa17.85■□□□□ 0.45
SYNE3-203ENST00000554873 CCDC12Q8WUD4 166 aaPredicted RBP17.85■□□□□ 0.45
SYNE3-203ENST00000554873 JPH2Q9BR39 696 aaPredicted RBP17.85■□□□□ 0.45
SYNE3-203ENST00000554873 AGXT2Q9BYV1 514 aa17.85■□□□□ 0.45
SYNE3-203ENST00000554873 KIAA1468Q9P260 1216 aa17.85■□□□□ 0.45
SYNE3-203ENST00000554873 FER1L4A9Z1Z3 1794 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 TUBBP07437 444 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 ISM2Q6H9L7 571 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 LMBR1LQ6UX01 489 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 ILDR1Q86SU0 546 aaPredicted RBP17.84■□□□□ 0.45
SYNE3-203ENST00000554873 PRPF38AQ8NAV1 312 aaKnown RBP17.84■□□□□ 0.45
SYNE3-203ENST00000554873 RAPGEF4Q8WZA2 1011 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 CLIC6Q96NY7 704 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 FMNL2Q96PY5 1086 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 SNRPA1P09661 255 aaKnown RBP17.84■□□□□ 0.45
SYNE3-203ENST00000554873 PHKG2P15735 406 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 GPTP24298 496 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 ELF1P32519 619 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 CASP7P55210 303 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 ANKLE2Q86XL3 938 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 ZNF396Q96N95 335 aaPredicted RBP17.84■□□□□ 0.45
SYNE3-203ENST00000554873 HELLSQ9NRZ9 838 aa17.84■□□□□ 0.45
SYNE3-203ENST00000554873 ZC3H6P61129 1189 aaKnown RBP17.83■□□□□ 0.45
SYNE3-203ENST00000554873 C11orf91Q3C1V1 193 aa17.83■□□□□ 0.45
SYNE3-203ENST00000554873 CHST3Q7LGC8 479 aa17.83■□□□□ 0.45
SYNE3-203ENST00000554873 NEUROD6Q96NK8 337 aa17.83■□□□□ 0.45
SYNE3-203ENST00000554873 DSCC1Q9BVC3 393 aa17.83■□□□□ 0.45
SYNE3-203ENST00000554873 SALL1Q9NSC2 1324 aa17.83■□□□□ 0.44
SYNE3-203ENST00000554873 LAMA4Q16363 1823 aa17.83■□□□□ 0.44
SYNE3-203ENST00000554873 E7EWF7 191 aa17.83■□□□□ 0.44
SYNE3-203ENST00000554873 IKBKBO14920 756 aa17.83■□□□□ 0.44
SYNE3-203ENST00000554873 LMOD1P29536 600 aaPredicted RBP17.83■□□□□ 0.44
SYNE3-203ENST00000554873 PDIA3P30101 505 aaKnown RBP17.83■□□□□ 0.44
SYNE3-203ENST00000554873 INPP5BP32019 993 aa17.83■□□□□ 0.44
SYNE3-203ENST00000554873 ME1P48163 572 aa17.83■□□□□ 0.44
SYNE3-203ENST00000554873 AARSP49588 968 aaKnown RBP eCLIP17.83■□□□□ 0.44
SYNE3-203ENST00000554873 TIMM10P62072 90 aa17.83■□□□□ 0.44
SYNE3-203ENST00000554873 ATL3Q6DD88 541 aa17.83■□□□□ 0.44
SYNE3-203ENST00000554873 FMR1NBQ8N0W7 255 aaPredicted RBP17.83■□□□□ 0.44
SYNE3-203ENST00000554873 JMYQ8N9B5 988 aa17.83■□□□□ 0.44
SYNE3-203ENST00000554873 CABS1Q96KC9 395 aa17.83■□□□□ 0.44
SYNE3-203ENST00000554873 PAG1Q9NWQ8 432 aa17.83■□□□□ 0.44
SYNE3-203ENST00000554873 TOP1P11387 765 aaKnown RBP17.82■□□□□ 0.44
SYNE3-203ENST00000554873 UBASH3AP57075 661 aa17.82■□□□□ 0.44
SYNE3-203ENST00000554873 CPLX2Q6PUV4 134 aaKnown RBP17.82■□□□□ 0.44
SYNE3-203ENST00000554873 VSTM4Q8IW00 320 aa17.82■□□□□ 0.44
SYNE3-203ENST00000554873 CTCFLQ8NI51 663 aaPredicted RBP17.82■□□□□ 0.44
SYNE3-203ENST00000554873 VIPAS39Q9H9C1 493 aa17.82■□□□□ 0.44
SYNE3-203ENST00000554873 PUF60Q9UHX1 559 aaKnown RBP17.82■□□□□ 0.44
SYNE3-203ENST00000554873 SHOX2O60902 331 aaPredicted RBP17.82■□□□□ 0.44
SYNE3-203ENST00000554873 HSPD1P10809 573 aaKnown RBP17.82■□□□□ 0.44
SYNE3-203ENST00000554873 CCT5P48643 541 aa17.82■□□□□ 0.44
SYNE3-203ENST00000554873 SKIDA1Q1XH10 827 aa17.82■□□□□ 0.44
SYNE3-203ENST00000554873 BAG1Q99933 345 aaPredicted RBP17.82■□□□□ 0.44
SYNE3-203ENST00000554873 NLRP2Q9NX02 1062 aa17.82■□□□□ 0.44
SYNE3-203ENST00000554873 CDC23Q9UJX2 597 aa17.82■□□□□ 0.44
SYNE3-203ENST00000554873 LMTK3Q96Q04 1460 aa17.82■□□□□ 0.44
SYNE3-203ENST00000554873 CAMTA1Q9Y6Y1 1673 aa17.82■□□□□ 0.44
SYNE3-203ENST00000554873 LRRIQ3A6PVS8 624 aaPredicted RBP17.81■□□□□ 0.44
SYNE3-203ENST00000554873 PRPF6O94906 941 aaKnown RBP17.81■□□□□ 0.44
SYNE3-203ENST00000554873 NLRP12P59046 1061 aa17.81■□□□□ 0.44
SYNE3-203ENST00000554873 VSNL1P62760 191 aa17.81■□□□□ 0.44
SYNE3-203ENST00000554873 TUBB2AQ13885 445 aa17.81■□□□□ 0.44
SYNE3-203ENST00000554873 ZMYM1Q5SVZ6 1142 aa17.81■□□□□ 0.44
SYNE3-203ENST00000554873 ATG9AQ7Z3C6 839 aa17.81■□□□□ 0.44
SYNE3-203ENST00000554873 MRPS27Q92552 414 aaKnown RBP17.81■□□□□ 0.44
SYNE3-203ENST00000554873 TUBB2BQ9BVA1 445 aa17.81■□□□□ 0.44
SYNE3-203ENST00000554873 MCM8Q9UJA3 840 aa17.81■□□□□ 0.44
SYNE3-203ENST00000554873 MYH15Q9Y2K3 1946 aa17.81■□□□□ 0.44
SYNE3-203ENST00000554873 FAXDC2Q96IV6 333 aa17.81■□□□□ 0.44
SYNE3-203ENST00000554873 PCDHA7Q9UN72 937 aa17.81■□□□□ 0.44
SYNE3-203ENST00000554873 PALLDQ8WX93 1383 aa17.81■□□□□ 0.44
SYNE3-203ENST00000554873 STX10O60499 249 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 ERCC3P19447 782 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 FOXO4P98177 505 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 KRT28Q7Z3Y7 464 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 ZNF274Q96GC6 653 aaPredicted RBP17.8■□□□□ 0.44
SYNE3-203ENST00000554873 RGPD5Q99666 1765 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 SYF2O95926 243 aaKnown RBP17.8■□□□□ 0.44
SYNE3-203ENST00000554873 SERPINC1P01008 464 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 ATP1A3P13637 1013 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 FDPSP14324 419 aaKnown RBP17.8■□□□□ 0.44
SYNE3-203ENST00000554873 GOLGA8FQ08AF8 430 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 GOLGA8DPQ0D2H9 430 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 TTC5Q8N0Z6 440 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 VEZTQ9HBM0 779 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 TATP17735 454 aaPredicted RBP17.8■□□□□ 0.44
SYNE3-203ENST00000554873 CFAP100Q494V2 611 aa17.8■□□□□ 0.44
SYNE3-203ENST00000554873 SMARCC1Q92922 1105 aaPredicted RBP17.8■□□□□ 0.44
SYNE3-203ENST00000554873 RDXP35241 583 aaKnown RBP17.79■□□□□ 0.44
SYNE3-203ENST00000554873 TOGARAM2Q6ZUX3 1019 aa17.79■□□□□ 0.44
SYNE3-203ENST00000554873 DPF2Q92785 391 aa17.79■□□□□ 0.44
SYNE3-203ENST00000554873 SCN11AQ9UI33 1791 aa17.79■□□□□ 0.44
SYNE3-203ENST00000554873 A0A1B0GVL5 298 aa17.79■□□□□ 0.44
SYNE3-203ENST00000554873 PLBD2Q8NHP8 589 aa17.79■□□□□ 0.44
SYNE3-203ENST00000554873 CDHR2Q9BYE9 1310 aa17.78■□□□□ 0.44
SYNE3-203ENST00000554873 AFDNP55196 1824 aaKnown RBP17.78■□□□□ 0.44
SYNE3-203ENST00000554873 CHUKO15111 745 aa17.78■□□□□ 0.44
SYNE3-203ENST00000554873 OTUD7BQ6GQQ9 843 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms