RNA–Protein interactions for RNA: ENST00000554811.5

XRCC3-208, Transcript of X-ray repair cross complementing 3, human

TSL 2

Gene XRCC3, Length 3,668 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
XRCC3-208	ENST00000554811	TMCO3	Q6UWJ1	677 aa		13.6	□□□□□ -0.23
XRCC3-208	ENST00000554811	USP49	Q70CQ1	688 aa		13.6	□□□□□ -0.23
XRCC3-208	ENST00000554811	PLCD3	Q8N3E9	789 aa		13.6	□□□□□ -0.23
XRCC3-208	ENST00000554811	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.6	□□□□□ -0.23
XRCC3-208	ENST00000554811	LRP10	Q7Z4F1	713 aa		13.6	□□□□□ -0.23
XRCC3-208	ENST00000554811	PPFIBP1	Q86W92	1011 aa		13.6	□□□□□ -0.23
XRCC3-208	ENST00000554811	KRI1	Q8N9T8	703 aa	Known RBP	13.6	□□□□□ -0.23
XRCC3-208	ENST00000554811	PRR29	P0C7W0	189 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	CMA1	P23946	247 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	CDC25A	P30304	524 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	CTSW	P56202	376 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	SLC39A14	Q15043	492 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	RBM43	Q6ZSC3	357 aa	Known RBP	13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	NBPF11	Q86T75	865 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	TTLL11	Q8NHH1	800 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	BLZF1	Q9H2G9	400 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	POLR3E	Q9NVU0	708 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	ARGLU1	Q9NWB6	273 aa	Predicted RBP	13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	ERCC3	P19447	782 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	CASQ1	P31415	396 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	ADD2	P35612	726 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	IFNL3	Q8IZI9	196 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	OXER1	Q8TDS5	423 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	ERO1A	Q96HE7	468 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	PCDHB6	Q9Y5E3	794 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	LCORL	Q8N3X6	602 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	SPATA5	Q8NB90	893 aa		13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	IRX2	Q9BZI1	471 aa	Predicted RBP	13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	SAMSN1	Q9NSI8	373 aa	Known RBP	13.59	□□□□□ -0.23
XRCC3-208	ENST00000554811	VWA3A	A6NCI4	1184 aa		13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	RAD21	O60216	631 aa		13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	IGHMBP2	P38935	993 aa	Known RBP	13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	HINFP	Q9BQA5	517 aa		13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811		V9GY48	417 aa	Predicted RBP	13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	ZMYM6	O95789	1325 aa		13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	GYG1	P46976	350 aa		13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	TTF1	Q15361	905 aa	Predicted RBP	13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	ANKRD7	Q92527	254 aa		13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	PDE8B	O95263	885 aa		13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	EVC	P57679	992 aa		13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	PDE4B	Q07343	736 aa		13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	SARM1	Q6SZW1	724 aa		13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	NLRP10	Q86W26	655 aa		13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	BAG1	Q99933	345 aa	Predicted RBP	13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
XRCC3-208	ENST00000554811	C1orf167	Q5SNV9	1468 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811		A0A1W2PQ27	194 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811		A0A1W2PQ64	194 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811		A0A1W2PQD8	194 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	WTIP	A6NIX2	430 aa	Predicted RBP	13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	SH2B2	O14492	632 aa	Predicted RBP	13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	RASGRF1	Q13972	1273 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	NFAT5	O94916	1531 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	ARHGAP23	Q9P227	1491 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	PALLD	Q8WX93	1383 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	ATL3	Q6DD88	541 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	PRDM4	Q9UKN5	801 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	CTIF	O43310	598 aa	Known RBP	13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	PCCA	P05165	728 aa	Predicted RBP	13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	MTF1	Q14872	753 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	POSTN	Q15063	836 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	EPSTI1	Q96J88	318 aa		13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
XRCC3-208	ENST00000554811	CDC25B	P30305	580 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	MCM6	Q14566	821 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	KIF4B	Q2VIQ3	1234 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	FAM47A	Q5JRC9	791 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	KRBA2	Q6ZNG9	492 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	NOSTRIN	Q8IVI9	506 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	VPS16	Q9H269	839 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	UBN2	Q6ZU65	1347 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	FOXP2	O15409	715 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	MCM7	P33993	719 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	GYS2	P54840	703 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	FEZ1	Q99689	392 aa		13.56	□□□□□ -0.24
XRCC3-208	ENST00000554811	PHACTR2	O75167	634 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	XBP1	P17861	261 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	METTL16	Q86W50	562 aa	Known RBP	13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	UIMC1	Q96RL1	719 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	NOL10	Q9BSC4	688 aa	Known RBP	13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	GPR108	Q9NPR9	543 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	SLIT1	O75093	1534 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	ERVV-2	B6SEH9	535 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	ZSCAN12	O43309	604 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	CIAO1	O76071	339 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	ETF1	P62495	437 aa	Known RBP	13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	PIP4K2B	P78356	416 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	PUM3	Q15397	648 aa	Known RBP	13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	AKNAD1	Q5T1N1	836 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	KIF2A	O00139	706 aa	Predicted RBP	13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	RHOXF2B	P0C7M4	288 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	ATP6V1A	P38606	617 aa		13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	DYNLL1	P63167	89 aa	Known RBP	13.55	□□□□□ -0.24
XRCC3-208	ENST00000554811	RHOXF2	Q9BQY4	288 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms