RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 ATRNL1Q5VV63 1379 aa14.12□□□□□ -0.15
VPS33B-204ENST00000554660 BCRP11274 1271 aa14.12□□□□□ -0.15
VPS33B-204ENST00000554660 SLC5A1P13866 664 aa14.12□□□□□ -0.15
VPS33B-204ENST00000554660 GPAT2Q6NUI2 795 aa14.12□□□□□ -0.15
VPS33B-204ENST00000554660 WDR66Q8TBY9 1149 aa14.12□□□□□ -0.15
VPS33B-204ENST00000554660 U2AF1L4Q8WU68 220 aaKnown RBP14.12□□□□□ -0.15
VPS33B-204ENST00000554660 HTATIP2Q9BUP3 242 aa14.12□□□□□ -0.15
VPS33B-204ENST00000554660 UNC93B1Q9H1C4 597 aa14.12□□□□□ -0.15
VPS33B-204ENST00000554660 FAM198AQ9UFP1 575 aa14.12□□□□□ -0.15
VPS33B-204ENST00000554660 MGAMO43451 1857 aa14.12□□□□□ -0.15
VPS33B-204ENST00000554660 FARP2O94887 1054 aaPredicted RBP14.11□□□□□ -0.15
VPS33B-204ENST00000554660 FCGRTP55899 365 aa14.11□□□□□ -0.15
VPS33B-204ENST00000554660 UBXN2AP68543 259 aa14.11□□□□□ -0.15
VPS33B-204ENST00000554660 ZFPM1Q8IX07 1006 aa14.11□□□□□ -0.15
VPS33B-204ENST00000554660 PRO3102Q9H379 93 aa14.11□□□□□ -0.15
VPS33B-204ENST00000554660 AK9Q5TCS8 1911 aa14.11□□□□□ -0.15
VPS33B-204ENST00000554660 LAMA3Q16787 3333 aa14.1□□□□□ -0.15
VPS33B-204ENST00000554660 EYA2O00167 538 aa14.1□□□□□ -0.15
VPS33B-204ENST00000554660 ELNP15502 786 aa14.1□□□□□ -0.15
VPS33B-204ENST00000554660 RFX5P48382 616 aaPredicted RBP14.1□□□□□ -0.15
VPS33B-204ENST00000554660 MRPL50Q8N5N7 158 aaKnown RBP14.1□□□□□ -0.15
VPS33B-204ENST00000554660 SLAIN1Q8ND83 568 aa14.1□□□□□ -0.15
VPS33B-204ENST00000554660 LPIN2Q92539 896 aa14.1□□□□□ -0.15
VPS33B-204ENST00000554660 USP40Q9NVE5 1235 aa14.1□□□□□ -0.15
VPS33B-204ENST00000554660 RFX7Q2KHR2 1363 aa14.09□□□□□ -0.15
VPS33B-204ENST00000554660 A0A0G2JLL6 359 aaPredicted RBP14.09□□□□□ -0.15
VPS33B-204ENST00000554660 LDHBP07195 334 aaKnown RBP14.09□□□□□ -0.15
VPS33B-204ENST00000554660 SLURP2P0DP57 97 aa14.09□□□□□ -0.15
VPS33B-204ENST00000554660 C20orf194Q5TEA3 1177 aa14.09□□□□□ -0.15
VPS33B-204ENST00000554660 GADL1Q6ZQY3 521 aa14.09□□□□□ -0.15
VPS33B-204ENST00000554660 PRRT2Q7Z6L0 340 aaPredicted RBP14.09□□□□□ -0.15
VPS33B-204ENST00000554660 USP44Q9H0E7 712 aa14.09□□□□□ -0.15
VPS33B-204ENST00000554660 SIL1Q9H173 461 aa14.09□□□□□ -0.15
VPS33B-204ENST00000554660 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.09□□□□□ -0.15
VPS33B-204ENST00000554660 DOCK1Q14185 1865 aa14.09□□□□□ -0.15
VPS33B-204ENST00000554660 PHF20L1A8MW92 1017 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 CXCL11O14625 94 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 ZBTB7BO15156 539 aaPredicted RBP14.08□□□□□ -0.16
VPS33B-204ENST00000554660 ADCY3O60266 1144 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 INHAP05111 366 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 FLT3LGP49771 235 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 RGS3P49796 1198 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 ATG9AQ7Z3C6 839 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 SCYL3Q8IZE3 742 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 PICK1Q9NRD5 415 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 NR2E3Q9Y5X4 410 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 ZHX2Q9Y6X8 837 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 PTPRCP08575 1304 aa14.08□□□□□ -0.16
VPS33B-204ENST00000554660 PTPRFP10586 1907 aa14.07□□□□□ -0.16
VPS33B-204ENST00000554660 TNPO2O14787 897 aaKnown RBP14.07□□□□□ -0.16
VPS33B-204ENST00000554660 PTPRAP18433 802 aa14.07□□□□□ -0.16
VPS33B-204ENST00000554660 PHKA1P46020 1223 aa14.07□□□□□ -0.16
VPS33B-204ENST00000554660 ATP2B3Q16720 1220 aa14.07□□□□□ -0.16
VPS33B-204ENST00000554660 SH3BP5LQ7L8J4 393 aa14.07□□□□□ -0.16
VPS33B-204ENST00000554660 CCDC84Q86UT8 332 aaPredicted RBP14.07□□□□□ -0.16
VPS33B-204ENST00000554660 TAOK2Q9UL54 1235 aa14.07□□□□□ -0.16
VPS33B-204ENST00000554660 COL6A3P12111 3177 aa14.07□□□□□ -0.16
VPS33B-204ENST00000554660 PHIPQ8WWQ0 1821 aa14.06□□□□□ -0.16
VPS33B-204ENST00000554660 TRIM75PA6NK02 468 aa14.06□□□□□ -0.16
VPS33B-204ENST00000554660 SOX1O00570 391 aaPredicted RBP14.06□□□□□ -0.16
VPS33B-204ENST00000554660 EVI5O60447 810 aa14.06□□□□□ -0.16
VPS33B-204ENST00000554660 SGPL1O95470 568 aa14.06□□□□□ -0.16
VPS33B-204ENST00000554660 FASTKD5Q7L8L6 764 aaKnown RBP14.06□□□□□ -0.16
VPS33B-204ENST00000554660 ZSCAN29Q8IWY8 852 aaPredicted RBP14.06□□□□□ -0.16
VPS33B-204ENST00000554660 SMCR8Q8TEV9 937 aaPredicted RBP14.06□□□□□ -0.16
VPS33B-204ENST00000554660 DEFB118Q96PH6 123 aa14.06□□□□□ -0.16
VPS33B-204ENST00000554660 AFG3L2Q9Y4W6 797 aa14.06□□□□□ -0.16
VPS33B-204ENST00000554660 SALL1Q9NSC2 1324 aa14.06□□□□□ -0.16
VPS33B-204ENST00000554660 DDTLA6NHG4 134 aaPredicted RBP14.05□□□□□ -0.16
VPS33B-204ENST00000554660 ADORA1P30542 326 aa14.05□□□□□ -0.16
VPS33B-204ENST00000554660 PICALMQ13492 652 aa14.05□□□□□ -0.16
VPS33B-204ENST00000554660 SSH1Q8WYL5 1049 aa14.05□□□□□ -0.16
VPS33B-204ENST00000554660 LRCH3Q96II8 777 aa14.05□□□□□ -0.16
VPS33B-204ENST00000554660 DDX4Q9NQI0 724 aaKnown RBP14.05□□□□□ -0.16
VPS33B-204ENST00000554660 ALPK3Q96L96 1907 aa14.05□□□□□ -0.16
VPS33B-204ENST00000554660 MYH2Q9UKX2 1941 aa14.04□□□□□ -0.16
VPS33B-204ENST00000554660 ENTPD3O75355 529 aa14.04□□□□□ -0.16
VPS33B-204ENST00000554660 TFRCP02786 760 aaKnown RBP14.04□□□□□ -0.16
VPS33B-204ENST00000554660 IRF5Q13568 498 aa14.04□□□□□ -0.16
VPS33B-204ENST00000554660 DZIP1Q86YF9 867 aaKnown RBP14.04□□□□□ -0.16
VPS33B-204ENST00000554660 ANKRD13CQ8N6S4 541 aa14.04□□□□□ -0.16
VPS33B-204ENST00000554660 DIS3LQ8TF46 1054 aaKnown RBP14.04□□□□□ -0.16
VPS33B-204ENST00000554660 IDI2Q9BXS1 227 aa14.04□□□□□ -0.16
VPS33B-204ENST00000554660 PAK6Q9NQU5 681 aaPredicted RBP14.04□□□□□ -0.16
VPS33B-204ENST00000554660 GNL3LQ9NVN8 582 aaKnown RBP14.04□□□□□ -0.16
VPS33B-204ENST00000554660 DENND2AQ9ULE3 1009 aa14.04□□□□□ -0.16
VPS33B-204ENST00000554660 LRRFIP2Q9Y608 721 aaKnown RBP14.04□□□□□ -0.16
VPS33B-204ENST00000554660 GAKO14976 1311 aa14.04□□□□□ -0.16
VPS33B-204ENST00000554660 FAM196BA6NMK8 535 aa14.03□□□□□ -0.16
VPS33B-204ENST00000554660 DEKP35659 375 aaKnown RBP14.03□□□□□ -0.16
VPS33B-204ENST00000554660 RASGRF1Q13972 1273 aa14.03□□□□□ -0.16
VPS33B-204ENST00000554660 C8orf34Q49A92 452 aa14.03□□□□□ -0.16
VPS33B-204ENST00000554660 TREML2Q5T2D2 321 aa14.03□□□□□ -0.16
VPS33B-204ENST00000554660 PXYLP1Q8TE99 480 aa14.03□□□□□ -0.16
VPS33B-204ENST00000554660 CLUAP1Q96AJ1 413 aa14.03□□□□□ -0.16
VPS33B-204ENST00000554660 PAWRQ96IZ0 340 aaKnown RBP14.03□□□□□ -0.16
VPS33B-204ENST00000554660 CEP126Q9P2H0 1117 aa14.03□□□□□ -0.16
VPS33B-204ENST00000554660 STAP2Q9UGK3 403 aa14.03□□□□□ -0.16
VPS33B-204ENST00000554660 AGTPBP1Q9UPW5 1226 aa14.03□□□□□ -0.16
VPS33B-204ENST00000554660 PA2G4Q9UQ80 394 aaKnown RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms