RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 GIMAP6Q6P9H5 292 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 OLFM4Q6UX06 510 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 RIOK1Q9BRS2 568 aaKnown RBP13.65□□□□□ -0.22
SHMT2-212ENST00000554467 SALL1Q9NSC2 1324 aa13.64□□□□□ -0.23
SHMT2-212ENST00000554467 APBA3O96018 575 aa13.64□□□□□ -0.23
SHMT2-212ENST00000554467 MSL1Q68DK7 614 aa13.64□□□□□ -0.23
SHMT2-212ENST00000554467 IGDCC4Q8TDY8 1250 aa13.64□□□□□ -0.23
SHMT2-212ENST00000554467 METAP2P50579 478 aaKnown RBP eCLIP13.64□□□□□ -0.231e-6■■■□□ 16.1
SHMT2-212ENST00000554467 GPSM2P81274 684 aa13.64□□□□□ -0.23
SHMT2-212ENST00000554467 ALX1Q15699 326 aa13.64□□□□□ -0.23
SHMT2-212ENST00000554467 LEO1Q8WVC0 666 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-212ENST00000554467 NSUN4Q96CB9 384 aaKnown RBP13.64□□□□□ -0.23
SHMT2-212ENST00000554467 LY9Q9HBG7 655 aa13.64□□□□□ -0.23
SHMT2-212ENST00000554467 PNPLA7Q6ZV29 1317 aa13.64□□□□□ -0.23
SHMT2-212ENST00000554467 POLR3DP05423 398 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-212ENST00000554467 HMGN5P82970 282 aaKnown RBP13.64□□□□□ -0.23
SHMT2-212ENST00000554467 PPARAQ07869 468 aa13.64□□□□□ -0.23
SHMT2-212ENST00000554467 APOA5Q6Q788 366 aa13.64□□□□□ -0.23
SHMT2-212ENST00000554467 CHMP4CQ96CF2 233 aa13.64□□□□□ -0.23
SHMT2-212ENST00000554467 BAZ2AQ9UIF9 1905 aaKnown RBP13.64□□□□□ -0.23
SHMT2-212ENST00000554467 EVCP57679 992 aa13.63□□□□□ -0.23
SHMT2-212ENST00000554467 DIXDC1Q155Q3 683 aa13.63□□□□□ -0.23
SHMT2-212ENST00000554467 MYH13Q9UKX3 1938 aa13.63□□□□□ -0.23
SHMT2-212ENST00000554467 UBR3Q6ZT12 1888 aa13.63□□□□□ -0.23
SHMT2-212ENST00000554467 ST5P78524 1137 aa13.63□□□□□ -0.23
SHMT2-212ENST00000554467 GTPBP4Q9BZE4 634 aaKnown RBP13.63□□□□□ -0.23
SHMT2-212ENST00000554467 GOLGA6L4A6NEF3 574 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 RGL2O15211 777 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 UFL1O94874 794 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 CYP2D6P10635 497 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 ADRA2BP18089 450 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 SLC27A3Q5K4L6 730 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 ILDR1Q86SU0 546 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-212ENST00000554467 SYAP1Q96A49 352 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-212ENST00000554467 IGSF3O75054 1194 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 GNAT2P19087 354 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 PGBD1Q96JS3 809 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 CACNA1SQ13698 1873 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 ZBTB43O43298 467 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 KIF20AO95235 890 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 CCDC183Q5T5S1 534 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 C8orf76Q96K31 380 aa13.62□□□□□ -0.23
SHMT2-212ENST00000554467 GOLGA8AA7E2F4 631 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 USP17L12C9JPN9 530 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 USP17L21D6R901 530 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 ZBTB22O15209 634 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 DZIP1Q86YF9 867 aaKnown RBP13.61□□□□□ -0.23
SHMT2-212ENST00000554467 FBXL16Q8N461 479 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 NUP133Q8WUM0 1156 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 USP28Q96RU2 1077 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 CCDC69A6NI79 296 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 POLRMTO00411 1230 aaKnown RBP13.61□□□□□ -0.23
SHMT2-212ENST00000554467 RANBP6O60518 1105 aaKnown RBP13.61□□□□□ -0.23
SHMT2-212ENST00000554467 TSPY26PQ9H489 355 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 SLC12A7Q9Y666 1083 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.61□□□□□ -0.233e-7■■□□□ 13.1
SHMT2-212ENST00000554467 SRCAPQ6ZRS2 3230 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 COL23A1Q86Y22 540 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-212ENST00000554467 BICD2Q8TD16 824 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 XDHP47989 1333 aa13.61□□□□□ -0.23
SHMT2-212ENST00000554467 SPDYE4A6NLX3 237 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 STAG1Q8WVM7 1258 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 SCAND2PQ9GZW5 306 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-212ENST00000554467 DACT1Q9NYF0 836 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 ZMYM6O95789 1325 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 KIF28PB7ZC32 967 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 RIMBP2O15034 1052 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 DHX16O60231 1041 aaKnown RBP13.6□□□□□ -0.23
SHMT2-212ENST00000554467 NMT2O60551 498 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 RBM6P78332 1123 aaKnown RBP13.6□□□□□ -0.23
SHMT2-212ENST00000554467 DNTTIP2Q5QJE6 756 aaKnown RBP13.6□□□□□ -0.23
SHMT2-212ENST00000554467 CKAP2LQ8IYA6 745 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 KRT23Q9C075 422 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 FAM217BQ9NTX9 383 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-212ENST00000554467 CCDC39Q9UFE4 941 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 KIF3AQ9Y496 699 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 IRS2Q9Y4H2 1338 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 CHD4Q14839 1912 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 C6orf229H3BNL8 230 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 CTR9Q6PD62 1173 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 TMEM87BQ96K49 555 aa13.6□□□□□ -0.23
SHMT2-212ENST00000554467 GTF2F1P35269 517 aaKnown RBP eCLIP13.59□□□□□ -0.23
SHMT2-212ENST00000554467 WTAPQ15007 396 aa13.59□□□□□ -0.23
SHMT2-212ENST00000554467 ZNF830Q96NB3 372 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-212ENST00000554467 SLC26A6Q9BXS9 759 aa13.59□□□□□ -0.23
SHMT2-212ENST00000554467 ZSCAN16Q9H4T2 348 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-212ENST00000554467 CNNM2Q9H8M5 875 aa13.59□□□□□ -0.23
SHMT2-212ENST00000554467 hCG_1642624A0A1W2PR95 340 aa13.59□□□□□ -0.23
SHMT2-212ENST00000554467 NR1I2O75469 434 aa13.59□□□□□ -0.23
SHMT2-212ENST00000554467 LETM1O95202 739 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-212ENST00000554467 GUCY1A2P33402 732 aa13.59□□□□□ -0.23
SHMT2-212ENST00000554467 FAM47AQ5JRC9 791 aa13.59□□□□□ -0.23
SHMT2-212ENST00000554467 C17orf53Q8N3J3 647 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-212ENST00000554467 UBAC1Q9BSL1 405 aa13.59□□□□□ -0.23
SHMT2-212ENST00000554467 ALG1Q9BT22 464 aa13.59□□□□□ -0.23
SHMT2-212ENST00000554467 POLLQ9UGP5 575 aa13.59□□□□□ -0.23
SHMT2-212ENST00000554467 BAZ2BQ9UIF8 2168 aaKnown RBP13.58□□□□□ -0.23
SHMT2-212ENST00000554467 USP17L8P0C7I0 530 aa13.58□□□□□ -0.23
SHMT2-212ENST00000554467 CRY2Q49AN0 593 aa13.58□□□□□ -0.23
SHMT2-212ENST00000554467 FBXW7Q969H0 707 aa13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms