RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 PTPRAP18433 802 aa17.47■□□□□ 0.39
PRPF39-204ENST00000553605 MDM2Q00987 491 aaPredicted RBP17.47■□□□□ 0.39
PRPF39-204ENST00000553605 SCYL3Q8IZE3 742 aa17.47■□□□□ 0.39
PRPF39-204ENST00000553605 DOCK3Q8IZD9 2030 aa17.47■□□□□ 0.39
PRPF39-204ENST00000553605 DDX60LQ5H9U9 1706 aaKnown RBP17.47■□□□□ 0.39
PRPF39-204ENST00000553605 PHF20L1A8MW92 1017 aa17.46■□□□□ 0.39
PRPF39-204ENST00000553605 NFIAQ12857 509 aa17.46■□□□□ 0.39
PRPF39-204ENST00000553605 TRIM32Q13049 653 aa17.46■□□□□ 0.39
PRPF39-204ENST00000553605 BEND3Q5T5X7 828 aa17.46■□□□□ 0.39
PRPF39-204ENST00000553605 CDC42EP5Q6NZY7 148 aa17.46■□□□□ 0.39
PRPF39-204ENST00000553605 AK9Q5TCS8 1911 aa17.46■□□□□ 0.39
PRPF39-204ENST00000553605 PFASO15067 1338 aa17.46■□□□□ 0.38
PRPF39-204ENST00000553605 GRM8O00222 908 aa17.45■□□□□ 0.38
PRPF39-204ENST00000553605 FAM110CQ1W6H9 321 aa17.45■□□□□ 0.38
PRPF39-204ENST00000553605 ZNF697Q5TEC3 545 aa17.45■□□□□ 0.38
PRPF39-204ENST00000553605 FAM198AQ9UFP1 575 aa17.45■□□□□ 0.38
PRPF39-204ENST00000553605 GJD2Q9UKL4 321 aa17.45■□□□□ 0.38
PRPF39-204ENST00000553605 F6X3S4 739 aa17.44■□□□□ 0.38
PRPF39-204ENST00000553605 COL9A1P20849 921 aa17.44■□□□□ 0.38
PRPF39-204ENST00000553605 ZFPM1Q8IX07 1006 aa17.44■□□□□ 0.38
PRPF39-204ENST00000553605 CDX2Q99626 313 aaPredicted RBP17.44■□□□□ 0.38
PRPF39-204ENST00000553605 AGTPBP1Q9UPW5 1226 aa17.44■□□□□ 0.38
PRPF39-204ENST00000553605 PRUNE2Q8WUY3 3088 aa17.43■□□□□ 0.38
PRPF39-204ENST00000553605 MAFAQ8NHW3 353 aaPredicted RBP17.43■□□□□ 0.38
PRPF39-204ENST00000553605 SYMPKQ92797 1274 aaKnown RBP17.43■□□□□ 0.38
PRPF39-204ENST00000553605 C9orf78Q9NZ63 289 aaPredicted RBP17.43■□□□□ 0.38
PRPF39-204ENST00000553605 PNMA3Q9UL41 463 aa17.43■□□□□ 0.38
PRPF39-204ENST00000553605 DAGLAQ9Y4D2 1042 aa17.43■□□□□ 0.38
PRPF39-204ENST00000553605 COL2A1P02458 1487 aaPredicted RBP17.43■□□□□ 0.38
PRPF39-204ENST00000553605 TRIM75PA6NK02 468 aa17.42■□□□□ 0.38
PRPF39-204ENST00000553605 COL6A1P12109 1028 aa17.42■□□□□ 0.38
PRPF39-204ENST00000553605 LRRC26Q2I0M4 334 aa17.42■□□□□ 0.38
PRPF39-204ENST00000553605 METTL24Q5JXM2 366 aa17.42■□□□□ 0.38
PRPF39-204ENST00000553605 USP40Q9NVE5 1235 aa17.42■□□□□ 0.38
PRPF39-204ENST00000553605 PDE8BO95263 885 aa17.41■□□□□ 0.38
PRPF39-204ENST00000553605 DIXDC1Q155Q3 683 aa17.41■□□□□ 0.38
PRPF39-204ENST00000553605 TREML2Q5T2D2 321 aa17.41■□□□□ 0.38
PRPF39-204ENST00000553605 WDR66Q8TBY9 1149 aa17.41■□□□□ 0.38
PRPF39-204ENST00000553605 TRIB2Q92519 343 aa17.41■□□□□ 0.38
PRPF39-204ENST00000553605 LBHD1Q9BQE6 289 aaPredicted RBP17.41■□□□□ 0.38
PRPF39-204ENST00000553605 LRRFIP2Q9Y608 721 aaKnown RBP17.41■□□□□ 0.38
PRPF39-204ENST00000553605 ATRNL1Q5VV63 1379 aa17.4■□□□□ 0.38
PRPF39-204ENST00000553605 CTNND1O60716 968 aaKnown RBP17.4■□□□□ 0.38
PRPF39-204ENST00000553605 ZEB1P37275 1124 aaPredicted RBP17.4■□□□□ 0.38
PRPF39-204ENST00000553605 GCLCP48506 637 aaPredicted RBP17.4■□□□□ 0.38
PRPF39-204ENST00000553605 LRRC24Q50LG9 513 aa17.4■□□□□ 0.38
PRPF39-204ENST00000553605 MAP3K21Q5TCX8 1036 aa17.4■□□□□ 0.38
PRPF39-204ENST00000553605 SEMA6BQ9H3T3 888 aa17.4■□□□□ 0.38
PRPF39-204ENST00000553605 PRKAR2AP13861 404 aaKnown RBP17.39■□□□□ 0.37
PRPF39-204ENST00000553605 MAP3K10Q02779 954 aa17.39■□□□□ 0.37
PRPF39-204ENST00000553605 VGLL2Q8N8G2 317 aa17.39■□□□□ 0.37
PRPF39-204ENST00000553605 CYP2B6P20813 491 aa17.38■□□□□ 0.37
PRPF39-204ENST00000553605 CCDC84Q86UT8 332 aaPredicted RBP17.38■□□□□ 0.37
PRPF39-204ENST00000553605 ZSCAN29Q8IWY8 852 aaPredicted RBP17.38■□□□□ 0.37
PRPF39-204ENST00000553605 KAZALD1Q96I82 304 aa17.38■□□□□ 0.37
PRPF39-204ENST00000553605 SUCLG2Q96I99 432 aa17.38■□□□□ 0.37
PRPF39-204ENST00000553605 PTPRFP10586 1907 aa17.38■□□□□ 0.37
PRPF39-204ENST00000553605 ENTPD3O75355 529 aa17.37■□□□□ 0.37
PRPF39-204ENST00000553605 IFIT1P09914 478 aaKnown RBP17.37■□□□□ 0.37
PRPF39-204ENST00000553605 RGS3P49796 1198 aa17.37■□□□□ 0.37
PRPF39-204ENST00000553605 PROCA1Q8NCQ7 364 aaPredicted RBP17.37■□□□□ 0.37
PRPF39-204ENST00000553605 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.37■□□□□ 0.37
PRPF39-204ENST00000553605 KIF16BQ96L93 1317 aa17.37■□□□□ 0.37
PRPF39-204ENST00000553605 SLURP2P0DP57 97 aa17.36■□□□□ 0.37
PRPF39-204ENST00000553605 PRDX5P30044 214 aa17.36■□□□□ 0.37
PRPF39-204ENST00000553605 PABPC4Q13310 644 aaKnown RBP eCLIP17.36■□□□□ 0.37
PRPF39-204ENST00000553605 LHX8Q68G74 356 aa17.36■□□□□ 0.37
PRPF39-204ENST00000553605 SH3BP5LQ7L8J4 393 aa17.36■□□□□ 0.37
PRPF39-204ENST00000553605 MYLIPQ8WY64 445 aa17.36■□□□□ 0.37
PRPF39-204ENST00000553605 IDI2Q9BXS1 227 aa17.36■□□□□ 0.37
PRPF39-204ENST00000553605 DNAH12Q6ZR08 3092 aa17.36■□□□□ 0.37
PRPF39-204ENST00000553605 MUC3AQ02505 3323 aa17.36■□□□□ 0.37
PRPF39-204ENST00000553605 CACNA1FO60840 1977 aa17.35■□□□□ 0.37
PRPF39-204ENST00000553605 VAMP4O75379 141 aa17.35■□□□□ 0.37
PRPF39-204ENST00000553605 ALDH1L1O75891 902 aa17.35■□□□□ 0.37
PRPF39-204ENST00000553605 LDHBP07195 334 aaKnown RBP17.35■□□□□ 0.37
PRPF39-204ENST00000553605 XRCC5P13010 732 aaKnown RBP17.35■□□□□ 0.37
PRPF39-204ENST00000553605 FGFR2P21802 821 aa17.35■□□□□ 0.37
PRPF39-204ENST00000553605 CACNB2Q08289 660 aaPredicted RBP17.35■□□□□ 0.37
PRPF39-204ENST00000553605 PUM3Q15397 648 aaKnown RBP17.35■□□□□ 0.37
PRPF39-204ENST00000553605 NUDT12Q9BQG2 462 aa17.35■□□□□ 0.37
PRPF39-204ENST00000553605 ASCC2Q9H1I8 757 aaPredicted RBP17.35■□□□□ 0.37
PRPF39-204ENST00000553605 SPINK5Q9NQ38 1064 aaPredicted RBP17.35■□□□□ 0.37
PRPF39-204ENST00000553605 PHIPQ8WWQ0 1821 aa17.35■□□□□ 0.37
PRPF39-204ENST00000553605 DDTLA6NHG4 134 aaPredicted RBP17.34■□□□□ 0.37
PRPF39-204ENST00000553605 TNFRSF10AO00220 468 aa17.34■□□□□ 0.37
PRPF39-204ENST00000553605 SPP2Q13103 211 aa17.34■□□□□ 0.37
PRPF39-204ENST00000553605 WWC1Q8IX03 1113 aa17.34■□□□□ 0.37
PRPF39-204ENST00000553605 TRMT44Q8IYL2 757 aaKnown RBP17.34■□□□□ 0.37
PRPF39-204ENST00000553605 DOCK2Q92608 1830 aa17.33■□□□□ 0.37
PRPF39-204ENST00000553605 NBPF7P0C2Y1 421 aaPredicted RBP17.33■□□□□ 0.36
PRPF39-204ENST00000553605 FOSL2P15408 326 aa17.33■□□□□ 0.36
PRPF39-204ENST00000553605 CCND3P30281 292 aaPredicted RBP17.33■□□□□ 0.36
PRPF39-204ENST00000553605 SHHQ15465 462 aa17.33■□□□□ 0.36
PRPF39-204ENST00000553605 CCDC27Q2M243 656 aa17.33■□□□□ 0.36
PRPF39-204ENST00000553605 SLC4A10Q6U841 1118 aa17.33■□□□□ 0.36
PRPF39-204ENST00000553605 SOCS4Q8WXH5 440 aa17.33■□□□□ 0.36
PRPF39-204ENST00000553605 SRCIN1Q9C0H9 1055 aa17.33■□□□□ 0.36
PRPF39-204ENST00000553605 SENP6Q9GZR1 1112 aaPredicted RBP17.33■□□□□ 0.36
PRPF39-204ENST00000553605 BICC1Q9H694 974 aaKnown RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms