RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 MBIPQ9NS73 344 aa8.91□□□□□ -0.98
LIMA1-210ENST00000552045 KRT82Q9NSB4 513 aa8.91□□□□□ -0.98
LIMA1-210ENST00000552045 STARD13Q9Y3M8 1113 aa8.91□□□□□ -0.98
LIMA1-210ENST00000552045 A0A1W2PQH9 124 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 MEIS3P2A8K0S8 358 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 CDC45O75419 566 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 HTR3BO95264 441 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 GJB6O95452 261 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 ECEL1O95672 775 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 POU4F3Q15319 338 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 WIPI1Q5MNZ9 446 aaPredicted RBP8.9□□□□□ -0.98
LIMA1-210ENST00000552045 FAM117BQ6P1L5 589 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 TXNDC11Q6PKC3 985 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 IRF7Q92985 503 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 TM9SF2Q99805 663 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 CORO1BQ9BR76 489 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 JPH1Q9HDC5 661 aaPredicted RBP8.9□□□□□ -0.98
LIMA1-210ENST00000552045 OSGEPQ9NPF4 335 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 FANCLQ9NW38 375 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 SNCAIPQ9Y6H5 919 aa8.9□□□□□ -0.98
LIMA1-210ENST00000552045 LINC01387J3KSC0 135 aa8.89□□□□□ -0.99
LIMA1-210ENST00000552045 GUCY2CP25092 1073 aa8.89□□□□□ -0.99
LIMA1-210ENST00000552045 INPP5AQ14642 412 aa8.89□□□□□ -0.99
LIMA1-210ENST00000552045 C20orf204Q6ZNR8 217 aa8.89□□□□□ -0.99
LIMA1-210ENST00000552045 TTC6Q86TZ1 520 aa8.89□□□□□ -0.99
LIMA1-210ENST00000552045 TMEM40Q8WWA1 233 aa8.89□□□□□ -0.99
LIMA1-210ENST00000552045 APPBP2Q92624 585 aa8.89□□□□□ -0.99
LIMA1-210ENST00000552045 ZNF775Q96BV0 537 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-210ENST00000552045 PLPPR2Q96GM1 343 aa8.89□□□□□ -0.99
LIMA1-210ENST00000552045 CCDC86Q9H6F5 360 aaKnown RBP8.89□□□□□ -0.99
LIMA1-210ENST00000552045 ERBB4Q15303 1308 aa8.88□□□□□ -0.99
LIMA1-210ENST00000552045 DDAH1O94760 285 aa8.88□□□□□ -0.99
LIMA1-210ENST00000552045 MAOBP27338 520 aa8.88□□□□□ -0.99
LIMA1-210ENST00000552045 MTERF2Q49AM1 385 aa8.88□□□□□ -0.99
LIMA1-210ENST00000552045 LRFN4Q6PJG9 635 aa8.88□□□□□ -0.99
LIMA1-210ENST00000552045 HDXQ7Z353 690 aa8.88□□□□□ -0.99
LIMA1-210ENST00000552045 GOLGA6L1Q8N7Z2 621 aa8.88□□□□□ -0.99
LIMA1-210ENST00000552045 ZSCAN1Q8NBB4 408 aa8.88□□□□□ -0.99
LIMA1-210ENST00000552045 CORINQ9Y5Q5 1042 aa8.88□□□□□ -0.99
LIMA1-210ENST00000552045 ESYT3A0FGR9 886 aa8.87□□□□□ -0.99
LIMA1-210ENST00000552045 FSCN2O14926 492 aa8.87□□□□□ -0.99
LIMA1-210ENST00000552045 AFF1P51825 1210 aaKnown RBP8.87□□□□□ -0.99
LIMA1-210ENST00000552045 SLCO4C1Q6ZQN7 724 aa8.87□□□□□ -0.99
LIMA1-210ENST00000552045 HOMER1Q86YM7 354 aa8.87□□□□□ -0.99
LIMA1-210ENST00000552045 TAB3Q8N5C8 712 aaPredicted RBP8.87□□□□□ -0.99
LIMA1-210ENST00000552045 GPR161Q8N6U8 529 aaKnown RBP8.87□□□□□ -0.99
LIMA1-210ENST00000552045 BRINP2Q9C0B6 783 aa8.87□□□□□ -0.99
LIMA1-210ENST00000552045 TMEM260Q9NX78 707 aa8.87□□□□□ -0.99
LIMA1-210ENST00000552045 REV1Q9UBZ9 1251 aa8.87□□□□□ -0.99
LIMA1-210ENST00000552045 TACC3Q9Y6A5 838 aa8.87□□□□□ -0.99
LIMA1-210ENST00000552045 IGF1RP08069 1367 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 hCG_2014768A0A024R1R8 64 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 B2RBV5 119 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 ZNF862O60290 1169 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 WFS1O76024 890 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 ALBP02768 609 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 IBSPP21815 317 aaPredicted RBP8.86□□□□□ -0.99
LIMA1-210ENST00000552045 IGBP1P78318 339 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 SQSTM1Q13501 440 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 MLECQ14165 292 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 C6orf15Q6UXA7 325 aaPredicted RBP8.86□□□□□ -0.99
LIMA1-210ENST00000552045 FILIP1Q7Z7B0 1213 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 FAM178BQ8IXR5 827 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 ZCRB1Q8TBF4 217 aaKnown RBP8.86□□□□□ -0.99
LIMA1-210ENST00000552045 IFT57Q9NWB7 429 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 GMIPQ9P107 970 aa8.86□□□□□ -0.99
LIMA1-210ENST00000552045 GDF2Q9UK05 429 aaPredicted RBP8.86□□□□□ -0.99
LIMA1-210ENST00000552045 CTSBP07858 339 aa8.85□□□□□ -0.99
LIMA1-210ENST00000552045 EPXP11678 715 aa8.85□□□□□ -0.99
LIMA1-210ENST00000552045 HNRNPUQ00839 825 aaKnown RBP eCLIP8.85□□□□□ -0.99
LIMA1-210ENST00000552045 C2orf27AQ580R0 203 aa8.85□□□□□ -0.99
LIMA1-210ENST00000552045 CYFIP1Q7L576 1253 aa8.85□□□□□ -0.99
LIMA1-210ENST00000552045 KIAA0907Q7Z7F0 614 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-210ENST00000552045 JMYQ8N9B5 988 aa8.85□□□□□ -0.99
LIMA1-210ENST00000552045 ST13P5Q8NFI4 369 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-210ENST00000552045 THAP3Q8WTV1 239 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-210ENST00000552045 KLHDC7BQ96G42 594 aa8.85□□□□□ -0.99
LIMA1-210ENST00000552045 CARD10Q9BWT7 1032 aa8.85□□□□□ -0.99
LIMA1-210ENST00000552045 SLKQ9H2G2 1235 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-210ENST00000552045 LEMD3Q9Y2U8 911 aa8.85□□□□□ -0.99
LIMA1-210ENST00000552045 PRKAB1Q9Y478 270 aa8.85□□□□□ -0.99
LIMA1-210ENST00000552045 SLC12A7Q9Y666 1083 aa8.85□□□□□ -0.99
LIMA1-210ENST00000552045 SLC22A31A6NKX4 558 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 DNAJC6O75061 913 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 NME1P15531 152 aaKnown RBP8.84□□□□□ -0.99
LIMA1-210ENST00000552045 LIG1P18858 919 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 PLCG1P19174 1290 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 PDE4BQ07343 736 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 PDE3AQ14432 1141 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 KIF4BQ2VIQ3 1234 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 INTS3Q68E01 1043 aaKnown RBP8.84□□□□□ -0.99
LIMA1-210ENST00000552045 OVOS1Q6IE37 1185 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 TREML4Q6UXN2 200 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 WFDC8Q8IUA0 241 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 ELMO3Q96BJ8 720 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 ATG4CQ96DT6 458 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 WDR89Q96FK6 387 aaPredicted RBP8.84□□□□□ -0.99
LIMA1-210ENST00000552045 SPC25Q9HBM1 224 aa8.84□□□□□ -0.99
LIMA1-210ENST00000552045 NOP58Q9Y2X3 529 aaKnown RBP8.84□□□□□ -0.99
LIMA1-210ENST00000552045 KDM2BQ8NHM5 1336 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms