RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 PIDD1Q9HB75 910 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 RTEL1Q9NZ71 1219 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 STIM2Q9P246 746 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 PPP1R9AQ9ULJ8 1098 aa3.97□□□□□ -1.77
LIMA1-209ENST00000552008 PATL2C9JE40 543 aaKnown RBP3.96□□□□□ -1.78
LIMA1-209ENST00000552008 SUV39H1O43463 412 aa3.96□□□□□ -1.78
LIMA1-209ENST00000552008 ECEL1O95672 775 aa3.96□□□□□ -1.78
LIMA1-209ENST00000552008 RPLP1P05386 114 aaKnown RBP3.96□□□□□ -1.78
LIMA1-209ENST00000552008 EDN3P14138 238 aa3.96□□□□□ -1.78
LIMA1-209ENST00000552008 SRPK2P78362 688 aaKnown RBP3.96□□□□□ -1.78
LIMA1-209ENST00000552008 PCDH1Q08174 1060 aa3.96□□□□□ -1.78
LIMA1-209ENST00000552008 KCNN1Q92952 543 aa3.96□□□□□ -1.78
LIMA1-209ENST00000552008 SLC26A8Q96RN1 970 aa3.96□□□□□ -1.78
LIMA1-209ENST00000552008 WDR18Q9BV38 432 aa3.96□□□□□ -1.78
LIMA1-209ENST00000552008 PODXL2Q9NZ53 605 aa3.96□□□□□ -1.78
LIMA1-209ENST00000552008 METTL12A8MUP2 240 aa3.95□□□□□ -1.78
LIMA1-209ENST00000552008 PRMT3O60678 531 aa3.95□□□□□ -1.78
LIMA1-209ENST00000552008 IGHA2P01877 340 aa3.95□□□□□ -1.78
LIMA1-209ENST00000552008 TRIM26Q12899 539 aaPredicted RBP3.95□□□□□ -1.78
LIMA1-209ENST00000552008 ELOAQ14241 798 aaKnown RBP3.95□□□□□ -1.78
LIMA1-209ENST00000552008 PDE3AQ14432 1141 aa3.95□□□□□ -1.78
LIMA1-209ENST00000552008 NAA30Q147X3 362 aaPredicted RBP3.95□□□□□ -1.78
LIMA1-209ENST00000552008 ZNF423Q2M1K9 1284 aa3.95□□□□□ -1.78
LIMA1-209ENST00000552008 SMYD4Q8IYR2 804 aaPredicted RBP3.95□□□□□ -1.78
LIMA1-209ENST00000552008 MKNK1Q9BUB5 465 aa3.95□□□□□ -1.78
LIMA1-209ENST00000552008 C19orf73Q9NVV2 129 aa3.95□□□□□ -1.78
LIMA1-209ENST00000552008 SYNGAP1Q96PV0 1343 aa3.95□□□□□ -1.78
LIMA1-209ENST00000552008 CARNS1A5YM72 827 aa3.94□□□□□ -1.78
LIMA1-209ENST00000552008 EREGO14944 169 aa3.94□□□□□ -1.78
LIMA1-209ENST00000552008 TMPRSS2O15393 492 aa3.94□□□□□ -1.78
LIMA1-209ENST00000552008 BRD1O95696 1058 aa3.94□□□□□ -1.78
LIMA1-209ENST00000552008 CELA3BP08861 270 aa3.94□□□□□ -1.78
LIMA1-209ENST00000552008 GDNFP39905 211 aa3.94□□□□□ -1.78
LIMA1-209ENST00000552008 CAPN12Q6ZSI9 719 aa3.94□□□□□ -1.78
LIMA1-209ENST00000552008 SPACA3Q8IXA5 215 aa3.94□□□□□ -1.78
LIMA1-209ENST00000552008 TOP6BLQ8N6T0 577 aa3.94□□□□□ -1.78
LIMA1-209ENST00000552008 MARCH10Q8NA82 808 aaPredicted RBP3.94□□□□□ -1.78
LIMA1-209ENST00000552008 STK32AQ8WU08 396 aa3.94□□□□□ -1.78
LIMA1-209ENST00000552008 TRIM56Q9BRZ2 755 aaKnown RBP3.94□□□□□ -1.78
LIMA1-209ENST00000552008 CLEC4MQ9H2X3 399 aaPredicted RBP3.94□□□□□ -1.78
LIMA1-209ENST00000552008 ATXN3LQ9H3M9 355 aa3.94□□□□□ -1.78
LIMA1-209ENST00000552008 A6NHS1 94 aa3.93□□□□□ -1.78
LIMA1-209ENST00000552008 SRFP11831 508 aa3.93□□□□□ -1.78
LIMA1-209ENST00000552008 OCLNQ16625 522 aa3.93□□□□□ -1.78
LIMA1-209ENST00000552008 ZXDCQ2QGD7 858 aaPredicted RBP3.93□□□□□ -1.78
LIMA1-209ENST00000552008 TMEM164Q5U3C3 297 aa3.93□□□□□ -1.78
LIMA1-209ENST00000552008 ATCAYQ86WG3 371 aa3.93□□□□□ -1.78
LIMA1-209ENST00000552008 TTC16Q8NEE8 873 aa3.93□□□□□ -1.78
LIMA1-209ENST00000552008 HEXIM2Q96MH2 286 aaKnown RBP3.93□□□□□ -1.78
LIMA1-209ENST00000552008 FANCD2OSQ96PS1 177 aa3.93□□□□□ -1.78
LIMA1-209ENST00000552008 CARS2Q9HA77 564 aaKnown RBP3.93□□□□□ -1.78
LIMA1-209ENST00000552008 MTMR7Q9Y216 660 aa3.93□□□□□ -1.78
LIMA1-209ENST00000552008 A0A096LPE4 126 aa3.92□□□□□ -1.78
LIMA1-209ENST00000552008 A0A1W2PPZ6 126 aa3.92□□□□□ -1.78
LIMA1-209ENST00000552008 RNGTTO60942 597 aaKnown RBP3.92□□□□□ -1.78
LIMA1-209ENST00000552008 PCSK2P16519 638 aa3.92□□□□□ -1.78
LIMA1-209ENST00000552008 KCNA1Q09470 495 aa3.92□□□□□ -1.78
LIMA1-209ENST00000552008 SWI5Q1ZZU3 235 aa3.92□□□□□ -1.78
LIMA1-209ENST00000552008 C8orf34Q49A92 452 aa3.92□□□□□ -1.78
LIMA1-209ENST00000552008 ERICH6BQ5W0A0 696 aa3.92□□□□□ -1.78
LIMA1-209ENST00000552008 DDX54Q8TDD1 881 aaKnown RBP3.92□□□□□ -1.78
LIMA1-209ENST00000552008 EDEM1Q92611 657 aa3.92□□□□□ -1.78
LIMA1-209ENST00000552008 GGNBP2Q9H3C7 697 aa3.92□□□□□ -1.78
LIMA1-209ENST00000552008 LATS2Q9NRM7 1088 aa3.92□□□□□ -1.78
LIMA1-209ENST00000552008 ZMIZ1Q9ULJ6 1067 aa3.92□□□□□ -1.78
LIMA1-209ENST00000552008 TMEM88BA6NKF7 163 aa3.91□□□□□ -1.78
LIMA1-209ENST00000552008 TRIM13O60858 407 aa3.91□□□□□ -1.78
LIMA1-209ENST00000552008 PHACTR2O75167 634 aa3.91□□□□□ -1.78
LIMA1-209ENST00000552008 CLCN7P51798 805 aa3.91□□□□□ -1.78
LIMA1-209ENST00000552008 ID3Q02535 119 aa3.91□□□□□ -1.78
LIMA1-209ENST00000552008 TTLL4Q14679 1199 aa3.91□□□□□ -1.78
LIMA1-209ENST00000552008 NKPD1Q17RQ9 610 aa3.91□□□□□ -1.78
LIMA1-209ENST00000552008 TCERG1LQ5VWI1 586 aa3.91□□□□□ -1.78
LIMA1-209ENST00000552008 PEAR1Q5VY43 1037 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-209ENST00000552008 ABHD4Q8TB40 342 aa3.91□□□□□ -1.78
LIMA1-209ENST00000552008 BAHD1Q8TBE0 780 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-209ENST00000552008 GTF2IRD1Q9UHL9 959 aa3.91□□□□□ -1.78
LIMA1-209ENST00000552008 PCOLCE2Q9UKZ9 415 aa3.91□□□□□ -1.78
LIMA1-209ENST00000552008 IGF2BP3O00425 579 aaKnown RBP eCLIP3.9□□□□□ -1.79
LIMA1-209ENST00000552008 HCLS1P14317 486 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-209ENST00000552008 LIG1P18858 919 aa3.9□□□□□ -1.79
LIMA1-209ENST00000552008 ATP2B4P23634 1241 aa3.9□□□□□ -1.79
LIMA1-209ENST00000552008 DNM1Q05193 864 aaKnown RBP3.9□□□□□ -1.79
LIMA1-209ENST00000552008 FAM214BQ7L5A3 538 aa3.9□□□□□ -1.79
LIMA1-209ENST00000552008 CLP1Q92989 425 aaKnown RBP3.9□□□□□ -1.79
LIMA1-209ENST00000552008 CCDC120Q96HB5 630 aa3.9□□□□□ -1.79
LIMA1-209ENST00000552008 GZF1Q9H116 711 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-209ENST00000552008 XYLT2Q9H1B5 865 aa3.9□□□□□ -1.79
LIMA1-209ENST00000552008 DISC1Q9NRI5 854 aa3.9□□□□□ -1.79
LIMA1-209ENST00000552008 CCDC9Q9Y3X0 531 aaKnown RBP3.9□□□□□ -1.79
LIMA1-209ENST00000552008 GNAT3A8MTJ3 354 aa3.89□□□□□ -1.79
LIMA1-209ENST00000552008 B3GALT4O96024 378 aa3.89□□□□□ -1.79
LIMA1-209ENST00000552008 PDGFAP04085 211 aa3.89□□□□□ -1.79
LIMA1-209ENST00000552008 SLFN14P0C7P3 912 aa3.89□□□□□ -1.79
LIMA1-209ENST00000552008 RAC2P15153 192 aa3.89□□□□□ -1.79
LIMA1-209ENST00000552008 SPRED3Q2MJR0 410 aa3.89□□□□□ -1.79
LIMA1-209ENST00000552008 TMCO4Q5TGY1 634 aa3.89□□□□□ -1.79
LIMA1-209ENST00000552008 WDR89Q96FK6 387 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-209ENST00000552008 IVNS1ABPQ9Y6Y0 642 aa3.89□□□□□ -1.79
LIMA1-209ENST00000552008 OTOL1A6NHN0 477 aaPredicted RBP3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms