RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CEP135Q66GS9 1140 aa5.53□□□□□ -1.52
LIMA1-208ENST00000551691 ALKBH2Q6NS38 261 aa5.53□□□□□ -1.52
LIMA1-208ENST00000551691 C16orf46Q6P387 395 aa5.53□□□□□ -1.52
LIMA1-208ENST00000551691 KRT27Q7Z3Y8 459 aa5.53□□□□□ -1.52
LIMA1-208ENST00000551691 NLRP13Q86W25 1043 aa5.53□□□□□ -1.52
LIMA1-208ENST00000551691 COL26A1Q96A83 441 aa5.53□□□□□ -1.52
LIMA1-208ENST00000551691 UBL7Q96S82 380 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-208ENST00000551691 RTEL1-TNFRSF6BF6WH68 1400 aa5.53□□□□□ -1.52
LIMA1-208ENST00000551691 BRWD3Q6RI45 1802 aa5.53□□□□□ -1.52
LIMA1-208ENST00000551691 MBD5Q9P267 1494 aa5.52□□□□□ -1.53
LIMA1-208ENST00000551691 TNFRSF10BO14763 440 aa5.52□□□□□ -1.53
LIMA1-208ENST00000551691 ZBTB39O15060 712 aa5.52□□□□□ -1.53
LIMA1-208ENST00000551691 DDX3YO15523 660 aaKnown RBP5.52□□□□□ -1.53
LIMA1-208ENST00000551691 MED26O95402 600 aa5.52□□□□□ -1.53
LIMA1-208ENST00000551691 ACAD11Q709F0 780 aa5.52□□□□□ -1.53
LIMA1-208ENST00000551691 FBXO33Q7Z6M2 555 aa5.52□□□□□ -1.53
LIMA1-208ENST00000551691 TTC16Q8NEE8 873 aa5.52□□□□□ -1.53
LIMA1-208ENST00000551691 GPR152Q8TDT2 470 aa5.52□□□□□ -1.53
LIMA1-208ENST00000551691 ORAI2Q96SN7 254 aa5.52□□□□□ -1.53
LIMA1-208ENST00000551691 C11orf16Q9NQ32 467 aa5.52□□□□□ -1.53
LIMA1-208ENST00000551691 PPME1Q9Y570 386 aa5.52□□□□□ -1.53
LIMA1-208ENST00000551691 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-208ENST00000551691 NKTRP30414 1462 aaKnown RBP5.51□□□□□ -1.53
LIMA1-208ENST00000551691 FMN1Q68DA7 1419 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 RECKO95980 971 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 TGFB1P01137 390 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 MPSTP25325 297 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 BRD2P25440 801 aaKnown RBP5.51□□□□□ -1.53
LIMA1-208ENST00000551691 ARHGAP4P98171 946 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 PDE3BQ13370 1112 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 NAALADL2Q58DX5 795 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.51□□□□□ -1.53
LIMA1-208ENST00000551691 UNC5CLQ8IV45 518 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 RASSF4Q9H2L5 321 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 SH2B1Q9NRF2 756 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-208ENST00000551691 TBX22Q9Y458 520 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 ABCC3O15438 1527 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 ASXL1Q8IXJ9 1541 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 CAMSAP2Q08AD1 1489 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 RALGAPBQ86X10 1494 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 ARHGAP35Q9NRY4 1499 aa5.51□□□□□ -1.53
LIMA1-208ENST00000551691 PIK3C2BO00750 1634 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 SCAMP3O14828 347 aaKnown RBP5.5□□□□□ -1.53
LIMA1-208ENST00000551691 P4HBP07237 508 aaKnown RBP5.5□□□□□ -1.53
LIMA1-208ENST00000551691 ACPPP15309 386 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 SOX18P35713 384 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 ZAP70P43403 619 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 TAGLNQ01995 201 aaKnown RBP5.5□□□□□ -1.53
LIMA1-208ENST00000551691 TMC7Q7Z402 723 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 TMEM130Q8N3G9 435 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 ABTB2Q8N961 1025 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 OR13H1Q8NG92 308 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 UBASH3BQ8TF42 649 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 DMRTB1Q96MA1 342 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 CAMKK2Q96RR4 588 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 RBCK1Q9BYM8 510 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 PDGFDQ9GZP0 370 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-208ENST00000551691 KANSL3Q9P2N6 904 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 VTI1BQ9UEU0 232 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 RAXQ9Y2V3 346 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 CCNB3Q8WWL7 1395 aa5.5□□□□□ -1.53
LIMA1-208ENST00000551691 CHD2O14647 1828 aaKnown RBP5.5□□□□□ -1.53
LIMA1-208ENST00000551691 KCNQ2O43526 872 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 LDHBP07195 334 aaKnown RBP5.49□□□□□ -1.53
LIMA1-208ENST00000551691 HOXD8P13378 290 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-208ENST00000551691 EPHA1P21709 976 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 CDC27P30260 824 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 CD68P34810 354 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-208ENST00000551691 PLCB3Q01970 1234 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 PSMD2Q13200 908 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 TTC39BQ5VTQ0 682 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-208ENST00000551691 MCTP1Q6DN14 999 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 Q6ZS46 218 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 ATCAYQ86WG3 371 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 ARMC10Q8N2F6 343 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 TMEM87AQ8NBN3 555 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 PIK3R5Q8WYR1 880 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 UBXN4Q92575 508 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 CITED4Q96RK1 184 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 SPON1Q9HCB6 807 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 STOML1Q9UBI4 398 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 GLI3P10071 1580 aa5.49□□□□□ -1.53
LIMA1-208ENST00000551691 GOLGB1Q14789 3259 aaKnown RBP5.49□□□□□ -1.53
LIMA1-208ENST00000551691 MST1RQ04912 1400 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 PTPRUQ92729 1446 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 PLEKHH2Q8IVE3 1493 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 HMX2A2RU54 273 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 SORBS3O60504 671 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 TRPA1O75762 1119 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 IGLV1-40P01703 118 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 PCSK2P16519 638 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 CANXP27824 592 aaKnown RBP5.48□□□□□ -1.53
LIMA1-208ENST00000551691 CD97P48960 835 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 HYAL2Q12891 473 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 GNL2Q13823 731 aaKnown RBP5.48□□□□□ -1.53
LIMA1-208ENST00000551691 KRTAP19-1Q8IUB9 90 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 UTP4Q969X6 686 aaKnown RBP5.48□□□□□ -1.53
LIMA1-208ENST00000551691 SPACA7Q96KW9 195 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 PUS7Q96PZ0 661 aaKnown RBP5.48□□□□□ -1.53
LIMA1-208ENST00000551691 BACH2Q9BYV9 841 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms