RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 CPA4Q9UI42 421 aa15.94■□□□□ 0.14
PTCH1-221ENST00000550914 RARSP54136 660 aaKnown RBP15.93■□□□□ 0.14
PTCH1-221ENST00000550914 HABP4Q5JVS0 413 aaKnown RBP15.93■□□□□ 0.14
PTCH1-221ENST00000550914 FASTKD5Q7L8L6 764 aaKnown RBP15.93■□□□□ 0.14
PTCH1-221ENST00000550914 SCYL3Q8IZE3 742 aa15.93■□□□□ 0.14
PTCH1-221ENST00000550914 SH3TC2Q8TF17 1288 aa15.93■□□□□ 0.14
PTCH1-221ENST00000550914 A0A0G2JLL6 359 aaPredicted RBP15.92■□□□□ 0.14
PTCH1-221ENST00000550914 NPM3O75607 178 aaKnown RBP15.92■□□□□ 0.14
PTCH1-221ENST00000550914 BCRP11274 1271 aa15.92■□□□□ 0.14
PTCH1-221ENST00000550914 CTGFP29279 349 aa15.92■□□□□ 0.14
PTCH1-221ENST00000550914 TIMM10P62072 90 aa15.92■□□□□ 0.14
PTCH1-221ENST00000550914 MVPQ14764 893 aaKnown RBP15.92■□□□□ 0.14
PTCH1-221ENST00000550914 GPAT2Q6NUI2 795 aa15.92■□□□□ 0.14
PTCH1-221ENST00000550914 PRRT2Q7Z6L0 340 aaPredicted RBP15.92■□□□□ 0.14
PTCH1-221ENST00000550914 PICK1Q9NRD5 415 aa15.92■□□□□ 0.14
PTCH1-221ENST00000550914 SLC45A1Q9Y2W3 748 aa15.92■□□□□ 0.14
PTCH1-221ENST00000550914 A0A1B0GUL7 405 aa15.91■□□□□ 0.14
PTCH1-221ENST00000550914 SRGAP3O43295 1099 aa15.91■□□□□ 0.14
PTCH1-221ENST00000550914 CTNND1O60716 968 aaKnown RBP15.91■□□□□ 0.14
PTCH1-221ENST00000550914 FMNL1O95466 1100 aaPredicted RBP15.91■□□□□ 0.14
PTCH1-221ENST00000550914 MAP4K4O95819 1239 aaPredicted RBP15.91■□□□□ 0.14
PTCH1-221ENST00000550914 PTPRAP18433 802 aa15.91■□□□□ 0.14
PTCH1-221ENST00000550914 OSBPP22059 807 aa15.91■□□□□ 0.14
PTCH1-221ENST00000550914 SH3BP5LQ7L8J4 393 aa15.91■□□□□ 0.14
PTCH1-221ENST00000550914 RAET1EQ8TD07 263 aa15.91■□□□□ 0.14
PTCH1-221ENST00000550914 XAGE2Q96GT9 111 aa15.91■□□□□ 0.14
PTCH1-221ENST00000550914 ABCF2Q9UG63 623 aa15.91■□□□□ 0.14
PTCH1-221ENST00000550914 ZHX2Q9Y6X8 837 aa15.91■□□□□ 0.14
PTCH1-221ENST00000550914 RANBP2P49792 3224 aaKnown RBP15.91■□□□□ 0.14
PTCH1-221ENST00000550914 MROH7-TTC4A0A0A0MT08 1334 aa15.91■□□□□ 0.14
PTCH1-221ENST00000550914 GPR75-ASB3A0A0A6YYF3 556 aa15.9■□□□□ 0.14
PTCH1-221ENST00000550914 GRK4P32298 578 aa15.9■□□□□ 0.14
PTCH1-221ENST00000550914 BTDP43251 543 aa15.9■□□□□ 0.14
PTCH1-221ENST00000550914 TFCP2Q12800 502 aa15.9■□□□□ 0.14
PTCH1-221ENST00000550914 ZSCAN29Q8IWY8 852 aaPredicted RBP15.9■□□□□ 0.14
PTCH1-221ENST00000550914 NKX2-3Q8TAU0 364 aa15.9■□□□□ 0.14
PTCH1-221ENST00000550914 AFG3L2Q9Y4W6 797 aa15.9■□□□□ 0.14
PTCH1-221ENST00000550914 DOCK3Q8IZD9 2030 aa15.9■□□□□ 0.14
PTCH1-221ENST00000550914 MYPNQ86TC9 1320 aa15.9■□□□□ 0.14
PTCH1-221ENST00000550914 COL2A1P02458 1487 aaPredicted RBP15.9■□□□□ 0.14
PTCH1-221ENST00000550914 DDTLA6NHG4 134 aaPredicted RBP15.89■□□□□ 0.13
PTCH1-221ENST00000550914 CCER2I3L3R5 266 aa15.89■□□□□ 0.13
PTCH1-221ENST00000550914 IPO8O15397 1037 aaKnown RBP15.89■□□□□ 0.13
PTCH1-221ENST00000550914 TBC1D12O60347 775 aa15.89■□□□□ 0.13
PTCH1-221ENST00000550914 FCGRTP55899 365 aa15.89■□□□□ 0.13
PTCH1-221ENST00000550914 ERICH6Q7L0X2 663 aa15.89■□□□□ 0.13
PTCH1-221ENST00000550914 DDX4Q9NQI0 724 aaKnown RBP15.89■□□□□ 0.13
PTCH1-221ENST00000550914 MYCP01106 439 aaPredicted RBP15.88■□□□□ 0.13
PTCH1-221ENST00000550914 LDHCP07864 332 aa15.88■□□□□ 0.13
PTCH1-221ENST00000550914 CYP2C8P10632 490 aa15.88■□□□□ 0.13
PTCH1-221ENST00000550914 RHBDL3P58872 404 aa15.88■□□□□ 0.13
PTCH1-221ENST00000550914 GSTO1P78417 241 aa15.88■□□□□ 0.13
PTCH1-221ENST00000550914 MECOMQ03112 1051 aa15.88■□□□□ 0.13
PTCH1-221ENST00000550914 ATAD5Q96QE3 1844 aa15.88■□□□□ 0.13
PTCH1-221ENST00000550914 GJB1P08034 283 aa15.87■□□□□ 0.13
PTCH1-221ENST00000550914 CAPN2P17655 700 aa15.87■□□□□ 0.13
PTCH1-221ENST00000550914 ARID4AP29374 1257 aaPredicted RBP15.87■□□□□ 0.13
PTCH1-221ENST00000550914 MTFR1Q15390 333 aa15.87■□□□□ 0.13
PTCH1-221ENST00000550914 SPATA5Q8NB90 893 aa15.87■□□□□ 0.13
PTCH1-221ENST00000550914 SLAIN1Q8ND83 568 aa15.87■□□□□ 0.13
PTCH1-221ENST00000550914 ZNF384Q8TF68 577 aa15.87■□□□□ 0.13
PTCH1-221ENST00000550914 SHISA4Q96DD7 197 aa15.87■□□□□ 0.13
PTCH1-221ENST00000550914 HMG20BQ9P0W2 317 aa15.87■□□□□ 0.13
PTCH1-221ENST00000550914 LOC285556D6RIA3 1793 aa15.86■□□□□ 0.13
PTCH1-221ENST00000550914 GNAI2P04899 355 aa15.86■□□□□ 0.13
PTCH1-221ENST00000550914 GJA8P48165 433 aa15.86■□□□□ 0.13
PTCH1-221ENST00000550914 UBXN2AP68543 259 aa15.86■□□□□ 0.13
PTCH1-221ENST00000550914 PRKCZQ05513 592 aa15.86■□□□□ 0.13
PTCH1-221ENST00000550914 PICALMQ13492 652 aa15.86■□□□□ 0.13
PTCH1-221ENST00000550914 GADL1Q6ZQY3 521 aa15.86■□□□□ 0.13
PTCH1-221ENST00000550914 NSUN4Q96CB9 384 aaKnown RBP15.86■□□□□ 0.13
PTCH1-221ENST00000550914 NEUROD6Q96NK8 337 aa15.86■□□□□ 0.13
PTCH1-221ENST00000550914 TBC1D2Q9BYX2 928 aa15.86■□□□□ 0.13
PTCH1-221ENST00000550914 OSBPL5Q9H0X9 879 aaPredicted RBP15.86■□□□□ 0.13
PTCH1-221ENST00000550914 ECM2O94769 699 aaPredicted RBP15.85■□□□□ 0.13
PTCH1-221ENST00000550914 CCL5P13501 91 aa15.85■□□□□ 0.13
PTCH1-221ENST00000550914 TRIM27P14373 513 aa15.85■□□□□ 0.13
PTCH1-221ENST00000550914 GORABQ5T7V8 394 aa15.85■□□□□ 0.13
PTCH1-221ENST00000550914 ATF7IPQ6VMQ6 1270 aa15.85■□□□□ 0.13
PTCH1-221ENST00000550914 AGTPBP1Q9UPW5 1226 aa15.85■□□□□ 0.13
PTCH1-221ENST00000550914 UQCRFS1P1P0C7P4 283 aa15.84■□□□□ 0.13
PTCH1-221ENST00000550914 FXR1P51114 621 aaKnown RBP eCLIP15.84■□□□□ 0.13
PTCH1-221ENST00000550914 G3BP1Q13283 466 aaKnown RBP eCLIP15.84■□□□□ 0.13
PTCH1-221ENST00000550914 IRF5Q13568 498 aa15.84■□□□□ 0.13
PTCH1-221ENST00000550914 UBE2Q1Q7Z7E8 422 aa15.84■□□□□ 0.13
PTCH1-221ENST00000550914 PROCA1Q8NCQ7 364 aaPredicted RBP15.84■□□□□ 0.13
PTCH1-221ENST00000550914 PXYLP1Q8TE99 480 aa15.84■□□□□ 0.13
PTCH1-221ENST00000550914 SMCR8Q8TEV9 937 aaPredicted RBP15.84■□□□□ 0.13
PTCH1-221ENST00000550914 RNF208Q9H0X6 261 aa15.84■□□□□ 0.13
PTCH1-221ENST00000550914 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.84■□□□□ 0.13
PTCH1-221ENST00000550914 BIN2Q9UBW5 565 aaPredicted RBP15.84■□□□□ 0.13
PTCH1-221ENST00000550914 PNMA3Q9UL41 463 aa15.84■□□□□ 0.13
PTCH1-221ENST00000550914 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.84■□□□□ 0.13
PTCH1-221ENST00000550914 MAST2Q6P0Q8 1798 aa15.84■□□□□ 0.13
PTCH1-221ENST00000550914 FOCADQ5VW36 1801 aa15.84■□□□□ 0.13
PTCH1-221ENST00000550914 CDK5RAP2Q96SN8 1893 aa15.84■□□□□ 0.13
PTCH1-221ENST00000550914 SZT2Q5T011 3432 aa15.84■□□□□ 0.13
PTCH1-221ENST00000550914 TRIM75PA6NK02 468 aa15.83■□□□□ 0.12
PTCH1-221ENST00000550914 H0YGN5 161 aa15.83■□□□□ 0.12
PTCH1-221ENST00000550914 IGSF3O75054 1194 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms