RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 TNNI2P48788 182 aa25.42■■□□□ 1.66
VPS29-206ENST00000549578 VPS53Q5VIR6 699 aa25.42■■□□□ 1.66
VPS29-206ENST00000549578 FAM83AQ86UY5 434 aa25.42■■□□□ 1.66
VPS29-206ENST00000549578 RAD50Q92878 1312 aa25.41■■□□□ 1.66
VPS29-206ENST00000549578 SGSM2O43147 1006 aa25.41■■□□□ 1.66
VPS29-206ENST00000549578 ENTPD3O75355 529 aa25.41■■□□□ 1.66
VPS29-206ENST00000549578 GNAT2P19087 354 aa25.41■■□□□ 1.66
VPS29-206ENST00000549578 PRAMEF18Q5VWM3 479 aa25.41■■□□□ 1.66
VPS29-206ENST00000549578 CASC1Q6TDU7 716 aa25.41■■□□□ 1.66
VPS29-206ENST00000549578 CDC37L1Q7L3B6 337 aa25.41■■□□□ 1.66
VPS29-206ENST00000549578 ESYT1Q9BSJ8 1104 aa25.41■■□□□ 1.66
VPS29-206ENST00000549578 OSBPL5Q9H0X9 879 aaPredicted RBP25.41■■□□□ 1.66
VPS29-206ENST00000549578 GSG1L2A8MUP6 293 aa25.4■■□□□ 1.66
VPS29-206ENST00000549578 NPM3O75607 178 aaKnown RBP25.4■■□□□ 1.66
VPS29-206ENST00000549578 TOMM70O94826 608 aa25.4■■□□□ 1.66
VPS29-206ENST00000549578 CDAN1Q8IWY9 1227 aa25.4■■□□□ 1.66
VPS29-206ENST00000549578 FAM151AQ8WW52 585 aa25.4■■□□□ 1.66
VPS29-206ENST00000549578 DCP1AQ9NPI6 582 aaPredicted RBP25.4■■□□□ 1.66
VPS29-206ENST00000549578 MKRN1Q9UHC7 482 aaKnown RBP25.4■■□□□ 1.66
VPS29-206ENST00000549578 SAP30BPQ9UHR5 308 aaKnown RBP25.4■■□□□ 1.66
VPS29-206ENST00000549578 NAV1Q8NEY1 1877 aa25.4■■□□□ 1.66
VPS29-206ENST00000549578 FOXP2O15409 715 aa25.39■■□□□ 1.66
VPS29-206ENST00000549578 APPP05067 770 aa25.39■■□□□ 1.66
VPS29-206ENST00000549578 MFAP1P55081 439 aaKnown RBP25.39■■□□□ 1.66
VPS29-206ENST00000549578 EPB41L4AQ9HCS5 686 aaPredicted RBP25.39■■□□□ 1.66
VPS29-206ENST00000549578 ATP8A2Q9NTI2 1148 aa25.39■■□□□ 1.66
VPS29-206ENST00000549578 PATL2C9JE40 543 aaKnown RBP25.38■■□□□ 1.65
VPS29-206ENST00000549578 TRAF5O00463 557 aa25.38■■□□□ 1.65
VPS29-206ENST00000549578 SH3BP5LQ7L8J4 393 aa25.38■■□□□ 1.65
VPS29-206ENST00000549578 FMR1Q06787 632 aaKnown RBP eCLIP25.37■■□□□ 1.65
VPS29-206ENST00000549578 SLC4A8Q2Y0W8 1093 aa25.37■■□□□ 1.65
VPS29-206ENST00000549578 ZSCAN29Q8IWY8 852 aaPredicted RBP25.37■■□□□ 1.65
VPS29-206ENST00000549578 RBM46Q8TBY0 533 aaKnown RBP25.37■■□□□ 1.65
VPS29-206ENST00000549578 TEPSINQ96N21 525 aa25.37■■□□□ 1.65
VPS29-206ENST00000549578 MCM9Q9NXL9 1143 aa25.37■■□□□ 1.65
VPS29-206ENST00000549578 PPP2R3BQ9Y5P8 575 aa25.37■■□□□ 1.65
VPS29-206ENST00000549578 DDX60LQ5H9U9 1706 aaKnown RBP25.37■■□□□ 1.65
VPS29-206ENST00000549578 BAZ2AQ9UIF9 1905 aaKnown RBP25.37■■□□□ 1.65
VPS29-206ENST00000549578 DDTLA6NHG4 134 aaPredicted RBP25.37■■□□□ 1.65
VPS29-206ENST00000549578 HSPD1P10809 573 aaKnown RBP25.37■■□□□ 1.65
VPS29-206ENST00000549578 SMC1BQ8NDV3 1235 aa25.37■■□□□ 1.65
VPS29-206ENST00000549578 PALD1Q9ULE6 856 aa25.37■■□□□ 1.65
VPS29-206ENST00000549578 MYH1P12882 1939 aa25.36■■□□□ 1.65
VPS29-206ENST00000549578 ITGBL1O95965 494 aaPredicted RBP25.36■■□□□ 1.65
VPS29-206ENST00000549578 IFNL3Q8IZI9 196 aa25.36■■□□□ 1.65
VPS29-206ENST00000549578 CDCA5Q96FF9 252 aa25.36■■□□□ 1.65
VPS29-206ENST00000549578 DDRGK1Q96HY6 314 aa25.36■■□□□ 1.65
VPS29-206ENST00000549578 RPAP1Q9BWH6 1393 aaPredicted RBP25.35■■□□□ 1.65
VPS29-206ENST00000549578 TDO2P48775 406 aa25.35■■□□□ 1.65
VPS29-206ENST00000549578 NBPF12Q5TAG4 269 aaPredicted RBP25.35■■□□□ 1.65
VPS29-206ENST00000549578 ATRNL1Q5VV63 1379 aa25.34■■□□□ 1.65
VPS29-206ENST00000549578 GIMAP6Q6P9H5 292 aa25.34■■□□□ 1.65
VPS29-206ENST00000549578 NACAP1Q9BZK3 213 aa25.34■■□□□ 1.65
VPS29-206ENST00000549578 COL2A1P02458 1487 aaPredicted RBP25.34■■□□□ 1.65
VPS29-206ENST00000549578 CYP2D6P10635 497 aa25.33■■□□□ 1.65
VPS29-206ENST00000549578 PTH1RQ03431 593 aa25.33■■□□□ 1.65
VPS29-206ENST00000549578 EVX2Q03828 476 aa25.33■■□□□ 1.65
VPS29-206ENST00000549578 CSRNP1Q96S65 589 aa25.33■■□□□ 1.65
VPS29-206ENST00000549578 NAPBQ9H115 298 aa25.33■■□□□ 1.65
VPS29-206ENST00000549578 CYP2D7A0A087X1C5 515 aa25.32■■□□□ 1.64
VPS29-206ENST00000549578 USP17L12C9JPN9 530 aa25.32■■□□□ 1.64
VPS29-206ENST00000549578 USP17L21D6R901 530 aa25.32■■□□□ 1.64
VPS29-206ENST00000549578 POLR3DP05423 398 aaPredicted RBP25.32■■□□□ 1.64
VPS29-206ENST00000549578 DHX36Q9H2U1 1008 aaKnown RBP25.32■■□□□ 1.64
VPS29-206ENST00000549578 SSC5DA1L4H1 1573 aa25.32■■□□□ 1.64
VPS29-206ENST00000549578 SLURP2P0DP57 97 aa25.32■■□□□ 1.64
VPS29-206ENST00000549578 CTR9Q6PD62 1173 aa25.32■■□□□ 1.64
VPS29-206ENST00000549578 DSCC1Q9BVC3 393 aa25.32■■□□□ 1.64
VPS29-206ENST00000549578 ANO2Q9NQ90 1003 aa25.32■■□□□ 1.64
VPS29-206ENST00000549578 SMIM22K7EJ46 135 aa25.31■■□□□ 1.64
VPS29-206ENST00000549578 FGAP02671 866 aa25.31■■□□□ 1.64
VPS29-206ENST00000549578 PLCD1P51178 756 aa25.31■■□□□ 1.64
VPS29-206ENST00000549578 KIAA1211Q6ZU35 1233 aa25.31■■□□□ 1.64
VPS29-206ENST00000549578 ZNF408Q9H9D4 720 aa25.31■■□□□ 1.64
VPS29-206ENST00000549578 ARPP21Q9UBL0 812 aaPredicted RBP25.31■■□□□ 1.64
VPS29-206ENST00000549578 SIPA1L1O43166 1804 aa25.3■■□□□ 1.64
VPS29-206ENST00000549578 ALX1Q15699 326 aa25.3■■□□□ 1.64
VPS29-206ENST00000549578 LSG1Q9H089 658 aaKnown RBP25.3■■□□□ 1.64
VPS29-206ENST00000549578 MINDY4BA8MYZ0 360 aa25.29■■□□□ 1.64
VPS29-206ENST00000549578 HLA-DOAP06340 250 aa25.29■■□□□ 1.64
VPS29-206ENST00000549578 FSTL1Q12841 308 aa25.29■■□□□ 1.64
VPS29-206ENST00000549578 SUPT20HL1Q3ZLR7 823 aa25.29■■□□□ 1.64
VPS29-206ENST00000549578 C12orf60Q5U649 245 aa25.29■■□□□ 1.64
VPS29-206ENST00000549578 MIGA2Q7L4E1 593 aa25.29■■□□□ 1.64
VPS29-206ENST00000549578 TTC6Q86TZ1 520 aa25.29■■□□□ 1.64
VPS29-206ENST00000549578 PI4KBQ9UBF8 816 aa25.29■■□□□ 1.64
VPS29-206ENST00000549578 PASKQ96RG2 1323 aa25.29■■□□□ 1.64
VPS29-206ENST00000549578 LAMB1P07942 1786 aa25.28■■□□□ 1.64
VPS29-206ENST00000549578 C8orf34Q49A92 452 aa25.28■■□□□ 1.64
VPS29-206ENST00000549578 SBK1Q52WX2 424 aa25.28■■□□□ 1.64
VPS29-206ENST00000549578 AMOTL1Q8IY63 956 aa25.28■■□□□ 1.64
VPS29-206ENST00000549578 FZD1Q9UP38 647 aa25.28■■□□□ 1.64
VPS29-206ENST00000549578 FAM196BA6NMK8 535 aa25.27■■□□□ 1.64
VPS29-206ENST00000549578 PRKG1Q13976 671 aa25.27■■□□□ 1.64
VPS29-206ENST00000549578 ZMYM6O95789 1325 aa25.27■■□□□ 1.64
VPS29-206ENST00000549578 CELF2O95319 508 aaKnown RBP25.27■■□□□ 1.64
VPS29-206ENST00000549578 NF2P35240 595 aa25.27■■□□□ 1.64
VPS29-206ENST00000549578 MAP4K1Q92918 833 aa25.26■■□□□ 1.63
VPS29-206ENST00000549578 DYNLL2Q96FJ2 89 aa25.26■■□□□ 1.63
VPS29-206ENST00000549578 TRPM7Q96QT4 1865 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms