RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 RARSP54136 660 aaKnown RBP15.93■□□□□ 0.14
PTCH1-218ENST00000548945 HABP4Q5JVS0 413 aaKnown RBP15.93■□□□□ 0.14
PTCH1-218ENST00000548945 FASTKD5Q7L8L6 764 aaKnown RBP15.93■□□□□ 0.14
PTCH1-218ENST00000548945 SCYL3Q8IZE3 742 aa15.93■□□□□ 0.14
PTCH1-218ENST00000548945 SH3TC2Q8TF17 1288 aa15.93■□□□□ 0.14
PTCH1-218ENST00000548945 A0A0G2JLL6 359 aaPredicted RBP15.92■□□□□ 0.14
PTCH1-218ENST00000548945 NPM3O75607 178 aaKnown RBP15.92■□□□□ 0.14
PTCH1-218ENST00000548945 BCRP11274 1271 aa15.92■□□□□ 0.14
PTCH1-218ENST00000548945 CTGFP29279 349 aa15.92■□□□□ 0.14
PTCH1-218ENST00000548945 TIMM10P62072 90 aa15.92■□□□□ 0.14
PTCH1-218ENST00000548945 MVPQ14764 893 aaKnown RBP15.92■□□□□ 0.14
PTCH1-218ENST00000548945 GPAT2Q6NUI2 795 aa15.92■□□□□ 0.14
PTCH1-218ENST00000548945 PRRT2Q7Z6L0 340 aaPredicted RBP15.92■□□□□ 0.14
PTCH1-218ENST00000548945 PICK1Q9NRD5 415 aa15.92■□□□□ 0.14
PTCH1-218ENST00000548945 SLC45A1Q9Y2W3 748 aa15.92■□□□□ 0.14
PTCH1-218ENST00000548945 A0A1B0GUL7 405 aa15.91■□□□□ 0.14
PTCH1-218ENST00000548945 SRGAP3O43295 1099 aa15.91■□□□□ 0.14
PTCH1-218ENST00000548945 CTNND1O60716 968 aaKnown RBP15.91■□□□□ 0.14
PTCH1-218ENST00000548945 FMNL1O95466 1100 aaPredicted RBP15.91■□□□□ 0.14
PTCH1-218ENST00000548945 MAP4K4O95819 1239 aaPredicted RBP15.91■□□□□ 0.14
PTCH1-218ENST00000548945 PTPRAP18433 802 aa15.91■□□□□ 0.14
PTCH1-218ENST00000548945 OSBPP22059 807 aa15.91■□□□□ 0.14
PTCH1-218ENST00000548945 SH3BP5LQ7L8J4 393 aa15.91■□□□□ 0.14
PTCH1-218ENST00000548945 RAET1EQ8TD07 263 aa15.91■□□□□ 0.14
PTCH1-218ENST00000548945 XAGE2Q96GT9 111 aa15.91■□□□□ 0.14
PTCH1-218ENST00000548945 ABCF2Q9UG63 623 aa15.91■□□□□ 0.14
PTCH1-218ENST00000548945 ZHX2Q9Y6X8 837 aa15.91■□□□□ 0.14
PTCH1-218ENST00000548945 RANBP2P49792 3224 aaKnown RBP15.91■□□□□ 0.14
PTCH1-218ENST00000548945 MROH7-TTC4A0A0A0MT08 1334 aa15.91■□□□□ 0.14
PTCH1-218ENST00000548945 GPR75-ASB3A0A0A6YYF3 556 aa15.9■□□□□ 0.14
PTCH1-218ENST00000548945 GRK4P32298 578 aa15.9■□□□□ 0.14
PTCH1-218ENST00000548945 BTDP43251 543 aa15.9■□□□□ 0.14
PTCH1-218ENST00000548945 TFCP2Q12800 502 aa15.9■□□□□ 0.14
PTCH1-218ENST00000548945 ZSCAN29Q8IWY8 852 aaPredicted RBP15.9■□□□□ 0.14
PTCH1-218ENST00000548945 NKX2-3Q8TAU0 364 aa15.9■□□□□ 0.14
PTCH1-218ENST00000548945 AFG3L2Q9Y4W6 797 aa15.9■□□□□ 0.14
PTCH1-218ENST00000548945 DOCK3Q8IZD9 2030 aa15.9■□□□□ 0.14
PTCH1-218ENST00000548945 MYPNQ86TC9 1320 aa15.9■□□□□ 0.14
PTCH1-218ENST00000548945 COL2A1P02458 1487 aaPredicted RBP15.9■□□□□ 0.14
PTCH1-218ENST00000548945 DDTLA6NHG4 134 aaPredicted RBP15.89■□□□□ 0.13
PTCH1-218ENST00000548945 CCER2I3L3R5 266 aa15.89■□□□□ 0.13
PTCH1-218ENST00000548945 IPO8O15397 1037 aaKnown RBP15.89■□□□□ 0.13
PTCH1-218ENST00000548945 TBC1D12O60347 775 aa15.89■□□□□ 0.13
PTCH1-218ENST00000548945 FCGRTP55899 365 aa15.89■□□□□ 0.13
PTCH1-218ENST00000548945 ERICH6Q7L0X2 663 aa15.89■□□□□ 0.13
PTCH1-218ENST00000548945 DDX4Q9NQI0 724 aaKnown RBP15.89■□□□□ 0.13
PTCH1-218ENST00000548945 MYCP01106 439 aaPredicted RBP15.88■□□□□ 0.13
PTCH1-218ENST00000548945 LDHCP07864 332 aa15.88■□□□□ 0.13
PTCH1-218ENST00000548945 CYP2C8P10632 490 aa15.88■□□□□ 0.13
PTCH1-218ENST00000548945 RHBDL3P58872 404 aa15.88■□□□□ 0.13
PTCH1-218ENST00000548945 GSTO1P78417 241 aa15.88■□□□□ 0.13
PTCH1-218ENST00000548945 MECOMQ03112 1051 aa15.88■□□□□ 0.13
PTCH1-218ENST00000548945 ATAD5Q96QE3 1844 aa15.88■□□□□ 0.13
PTCH1-218ENST00000548945 GJB1P08034 283 aa15.87■□□□□ 0.13
PTCH1-218ENST00000548945 CAPN2P17655 700 aa15.87■□□□□ 0.13
PTCH1-218ENST00000548945 ARID4AP29374 1257 aaPredicted RBP15.87■□□□□ 0.13
PTCH1-218ENST00000548945 MTFR1Q15390 333 aa15.87■□□□□ 0.13
PTCH1-218ENST00000548945 SPATA5Q8NB90 893 aa15.87■□□□□ 0.13
PTCH1-218ENST00000548945 SLAIN1Q8ND83 568 aa15.87■□□□□ 0.13
PTCH1-218ENST00000548945 ZNF384Q8TF68 577 aa15.87■□□□□ 0.13
PTCH1-218ENST00000548945 SHISA4Q96DD7 197 aa15.87■□□□□ 0.13
PTCH1-218ENST00000548945 HMG20BQ9P0W2 317 aa15.87■□□□□ 0.13
PTCH1-218ENST00000548945 LOC285556D6RIA3 1793 aa15.86■□□□□ 0.13
PTCH1-218ENST00000548945 GNAI2P04899 355 aa15.86■□□□□ 0.13
PTCH1-218ENST00000548945 GJA8P48165 433 aa15.86■□□□□ 0.13
PTCH1-218ENST00000548945 UBXN2AP68543 259 aa15.86■□□□□ 0.13
PTCH1-218ENST00000548945 PRKCZQ05513 592 aa15.86■□□□□ 0.13
PTCH1-218ENST00000548945 PICALMQ13492 652 aa15.86■□□□□ 0.13
PTCH1-218ENST00000548945 GADL1Q6ZQY3 521 aa15.86■□□□□ 0.13
PTCH1-218ENST00000548945 NSUN4Q96CB9 384 aaKnown RBP15.86■□□□□ 0.13
PTCH1-218ENST00000548945 NEUROD6Q96NK8 337 aa15.86■□□□□ 0.13
PTCH1-218ENST00000548945 TBC1D2Q9BYX2 928 aa15.86■□□□□ 0.13
PTCH1-218ENST00000548945 OSBPL5Q9H0X9 879 aaPredicted RBP15.86■□□□□ 0.13
PTCH1-218ENST00000548945 ECM2O94769 699 aaPredicted RBP15.85■□□□□ 0.13
PTCH1-218ENST00000548945 CCL5P13501 91 aa15.85■□□□□ 0.13
PTCH1-218ENST00000548945 TRIM27P14373 513 aa15.85■□□□□ 0.13
PTCH1-218ENST00000548945 GORABQ5T7V8 394 aa15.85■□□□□ 0.13
PTCH1-218ENST00000548945 ATF7IPQ6VMQ6 1270 aa15.85■□□□□ 0.13
PTCH1-218ENST00000548945 AGTPBP1Q9UPW5 1226 aa15.85■□□□□ 0.13
PTCH1-218ENST00000548945 UQCRFS1P1P0C7P4 283 aa15.84■□□□□ 0.13
PTCH1-218ENST00000548945 FXR1P51114 621 aaKnown RBP eCLIP15.84■□□□□ 0.13
PTCH1-218ENST00000548945 G3BP1Q13283 466 aaKnown RBP eCLIP15.84■□□□□ 0.13
PTCH1-218ENST00000548945 IRF5Q13568 498 aa15.84■□□□□ 0.13
PTCH1-218ENST00000548945 UBE2Q1Q7Z7E8 422 aa15.84■□□□□ 0.13
PTCH1-218ENST00000548945 PROCA1Q8NCQ7 364 aaPredicted RBP15.84■□□□□ 0.13
PTCH1-218ENST00000548945 PXYLP1Q8TE99 480 aa15.84■□□□□ 0.13
PTCH1-218ENST00000548945 SMCR8Q8TEV9 937 aaPredicted RBP15.84■□□□□ 0.13
PTCH1-218ENST00000548945 RNF208Q9H0X6 261 aa15.84■□□□□ 0.13
PTCH1-218ENST00000548945 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.84■□□□□ 0.13
PTCH1-218ENST00000548945 BIN2Q9UBW5 565 aaPredicted RBP15.84■□□□□ 0.13
PTCH1-218ENST00000548945 PNMA3Q9UL41 463 aa15.84■□□□□ 0.13
PTCH1-218ENST00000548945 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.84■□□□□ 0.13
PTCH1-218ENST00000548945 MAST2Q6P0Q8 1798 aa15.84■□□□□ 0.13
PTCH1-218ENST00000548945 FOCADQ5VW36 1801 aa15.84■□□□□ 0.13
PTCH1-218ENST00000548945 CDK5RAP2Q96SN8 1893 aa15.84■□□□□ 0.13
PTCH1-218ENST00000548945 SZT2Q5T011 3432 aa15.84■□□□□ 0.13
PTCH1-218ENST00000548945 TRIM75PA6NK02 468 aa15.83■□□□□ 0.12
PTCH1-218ENST00000548945 H0YGN5 161 aa15.83■□□□□ 0.12
PTCH1-218ENST00000548945 IGSF3O75054 1194 aa15.83■□□□□ 0.12
PTCH1-218ENST00000548945 PI16Q6UXB8 463 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms