RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SLC23A3Q6PIS1 610 aa6.98□□□□□ -1.29
VPS29-205ENST00000548539 CILP2Q8IUL8 1156 aa6.98□□□□□ -1.29
VPS29-205ENST00000548539 WDR18Q9BV38 432 aa6.98□□□□□ -1.29
VPS29-205ENST00000548539 PIDD1Q9HB75 910 aa6.98□□□□□ -1.29
VPS29-205ENST00000548539 ZFYVE28Q9HCC9 887 aa6.98□□□□□ -1.29
VPS29-205ENST00000548539 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.98□□□□□ -1.29
VPS29-205ENST00000548539 DCTN4Q9UJW0 460 aa6.98□□□□□ -1.29
VPS29-205ENST00000548539 SYNGAP1Q96PV0 1343 aa6.98□□□□□ -1.29
VPS29-205ENST00000548539 TMEM265A0A087WTH1 108 aa6.97□□□□□ -1.29
VPS29-205ENST00000548539 POLR3DP05423 398 aaPredicted RBP6.97□□□□□ -1.29
VPS29-205ENST00000548539 GRIA4P48058 902 aa6.97□□□□□ -1.29
VPS29-205ENST00000548539 LCE5AQ5TCM9 118 aa6.97□□□□□ -1.29
VPS29-205ENST00000548539 FLAD1Q8NFF5 587 aa6.97□□□□□ -1.29
VPS29-205ENST00000548539 PPP1R16BQ96T49 567 aa6.97□□□□□ -1.29
VPS29-205ENST00000548539 LIN7BQ9HAP6 207 aa6.97□□□□□ -1.29
VPS29-205ENST00000548539 MKNK2Q9HBH9 465 aa6.97□□□□□ -1.29
VPS29-205ENST00000548539 ZNF503-AS2A6NEH8 195 aa6.96□□□□□ -1.3
VPS29-205ENST00000548539 B3GALT4O96024 378 aa6.96□□□□□ -1.3
VPS29-205ENST00000548539 NPR3P17342 541 aa6.96□□□□□ -1.3
VPS29-205ENST00000548539 CCDC87Q9NVE4 849 aa6.96□□□□□ -1.3
VPS29-205ENST00000548539 NCANO14594 1321 aa6.96□□□□□ -1.3
VPS29-205ENST00000548539 A0A1W2PP55 124 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 PRRG2O14669 202 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 TSPAN15O95858 294 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 CEACAM5P06731 702 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 ANKLE2Q86XL3 938 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 NPAS4Q8IUM7 802 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 SIAH1Q8IUQ4 282 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 LRRC56Q8IYG6 542 aaPredicted RBP6.95□□□□□ -1.3
VPS29-205ENST00000548539 TCF12Q99081 682 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 BCL2L13Q9BXK5 485 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 ATXN3LQ9H3M9 355 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 CRIM1Q9NZV1 1036 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 U3KQE9 123 aa6.95□□□□□ -1.3
VPS29-205ENST00000548539 B8ZZF3 427 aa6.94□□□□□ -1.3
VPS29-205ENST00000548539 NDUFB5O43674 189 aa6.94□□□□□ -1.3
VPS29-205ENST00000548539 SLFN14P0C7P3 912 aa6.94□□□□□ -1.3
VPS29-205ENST00000548539 ERCC3P19447 782 aa6.94□□□□□ -1.3
VPS29-205ENST00000548539 OXCT1P55809 520 aa6.94□□□□□ -1.3
VPS29-205ENST00000548539 LCNL1Q6ZST4 164 aa6.94□□□□□ -1.3
VPS29-205ENST00000548539 SMYD4Q8IYR2 804 aaPredicted RBP6.94□□□□□ -1.3
VPS29-205ENST00000548539 TMC1Q8TDI8 760 aa6.94□□□□□ -1.3
VPS29-205ENST00000548539 ASB16Q96NS5 453 aa6.94□□□□□ -1.3
VPS29-205ENST00000548539 BRPF3Q9ULD4 1205 aa6.94□□□□□ -1.3
VPS29-205ENST00000548539 UNCXA6NJT0 531 aa6.93□□□□□ -1.3
VPS29-205ENST00000548539 TMPRSS2O15393 492 aa6.93□□□□□ -1.3
VPS29-205ENST00000548539 FZD6O60353 706 aa6.93□□□□□ -1.3
VPS29-205ENST00000548539 AP3B2Q13367 1082 aa6.93□□□□□ -1.3
VPS29-205ENST00000548539 C1QL4Q86Z23 238 aa6.93□□□□□ -1.3
VPS29-205ENST00000548539 ZSCAN29Q8IWY8 852 aaPredicted RBP6.93□□□□□ -1.3
VPS29-205ENST00000548539 GIPC2Q8TF65 315 aa6.93□□□□□ -1.3
VPS29-205ENST00000548539 FANCD2OSQ96PS1 177 aa6.93□□□□□ -1.3
VPS29-205ENST00000548539 PRDM7Q9NQW5 492 aa6.93□□□□□ -1.3
VPS29-205ENST00000548539 PLAGL2Q9UPG8 496 aa6.93□□□□□ -1.3
VPS29-205ENST00000548539 LEFTY1O75610 366 aa6.92□□□□□ -1.3
VPS29-205ENST00000548539 ZSCAN22P10073 491 aaPredicted RBP6.92□□□□□ -1.3
VPS29-205ENST00000548539 LIG1P18858 919 aa6.92□□□□□ -1.3
VPS29-205ENST00000548539 TAGLNQ01995 201 aaKnown RBP6.92□□□□□ -1.3
VPS29-205ENST00000548539 SYDE1Q6ZW31 735 aaPredicted RBP6.92□□□□□ -1.3
VPS29-205ENST00000548539 TMC7Q7Z402 723 aa6.92□□□□□ -1.3
VPS29-205ENST00000548539 GALNT12Q8IXK2 581 aa6.92□□□□□ -1.3
VPS29-205ENST00000548539 LIN37Q96GY3 246 aaPredicted RBP6.92□□□□□ -1.3
VPS29-205ENST00000548539 ZNF576Q9H609 170 aa6.92□□□□□ -1.3
VPS29-205ENST00000548539 RBM47A0AV96 593 aaKnown RBP6.91□□□□□ -1.3
VPS29-205ENST00000548539 E9PSI1 815 aa6.91□□□□□ -1.3
VPS29-205ENST00000548539 RNGTTO60942 597 aaKnown RBP6.91□□□□□ -1.3
VPS29-205ENST00000548539 ITIH2P19823 946 aa6.91□□□□□ -1.3
VPS29-205ENST00000548539 ID3Q02535 119 aa6.91□□□□□ -1.3
VPS29-205ENST00000548539 DUSP23Q9BVJ7 150 aa6.91□□□□□ -1.3
VPS29-205ENST00000548539 RBCK1Q9BYM8 510 aa6.91□□□□□ -1.3
VPS29-205ENST00000548539 SNX11Q9Y5W9 270 aa6.91□□□□□ -1.3
VPS29-205ENST00000548539 ZNF16P17020 682 aaPredicted RBP6.9□□□□□ -1.3
VPS29-205ENST00000548539 AFMP43652 599 aa6.9□□□□□ -1.3
VPS29-205ENST00000548539 ZP2Q05996 745 aa6.9□□□□□ -1.3
VPS29-205ENST00000548539 IKZF1Q13422 519 aa6.9□□□□□ -1.3
VPS29-205ENST00000548539 ASB11Q8WXH4 323 aa6.9□□□□□ -1.3
VPS29-205ENST00000548539 WDR89Q96FK6 387 aaPredicted RBP6.9□□□□□ -1.3
VPS29-205ENST00000548539 DISC1Q9NRI5 854 aa6.9□□□□□ -1.3
VPS29-205ENST00000548539 LMCD1Q9NZU5 365 aa6.9□□□□□ -1.3
VPS29-205ENST00000548539 PCOLCE2Q9UKZ9 415 aa6.9□□□□□ -1.3
VPS29-205ENST00000548539 HNRNPUQ00839 825 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS29-205ENST00000548539 TTLL4Q14679 1199 aa6.89□□□□□ -1.31
VPS29-205ENST00000548539 MPZL3Q6UWV2 235 aa6.89□□□□□ -1.31
VPS29-205ENST00000548539 GJD3Q8N144 294 aa6.89□□□□□ -1.31
VPS29-205ENST00000548539 ZC3H12CQ9C0D7 883 aaKnown RBP6.89□□□□□ -1.31
VPS29-205ENST00000548539 TNKS2Q9H2K2 1166 aa6.89□□□□□ -1.31
VPS29-205ENST00000548539 CCDC86Q9H6F5 360 aaKnown RBP6.89□□□□□ -1.31
VPS29-205ENST00000548539 CTNND2Q9UQB3 1225 aa6.89□□□□□ -1.31
VPS29-205ENST00000548539 P4HBP07237 508 aaKnown RBP6.88□□□□□ -1.31
VPS29-205ENST00000548539 HCLS1P14317 486 aaPredicted RBP6.88□□□□□ -1.31
VPS29-205ENST00000548539 ITPKAP23677 461 aa6.88□□□□□ -1.31
VPS29-205ENST00000548539 KIAA0319Q5VV43 1072 aa6.88□□□□□ -1.31
VPS29-205ENST00000548539 TTLL10Q6ZVT0 673 aa6.88□□□□□ -1.31
VPS29-205ENST00000548539 FBXO33Q7Z6M2 555 aa6.88□□□□□ -1.31
VPS29-205ENST00000548539 EHD4Q9H223 541 aa6.88□□□□□ -1.31
VPS29-205ENST00000548539 SSU72Q9NP77 194 aaKnown RBP6.88□□□□□ -1.31
VPS29-205ENST00000548539 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.87□□□□□ -1.31
VPS29-205ENST00000548539 NFIBO00712 420 aa6.87□□□□□ -1.31
VPS29-205ENST00000548539 GPR182O15218 404 aa6.87□□□□□ -1.31
VPS29-205ENST00000548539 GLI1P08151 1106 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms