RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 MAGEA10P43363 369 aaPredicted RBP11.86□□□□□ -0.51
CHD4-212ENST00000545083 METTL24Q5JXM2 366 aa11.86□□□□□ -0.51
CHD4-212ENST00000545083 GADL1Q6ZQY3 521 aa11.86□□□□□ -0.51
CHD4-212ENST00000545083 PDE8BO95263 885 aa11.85□□□□□ -0.51
CHD4-212ENST00000545083 NBPF7P0C2Y1 421 aaPredicted RBP11.85□□□□□ -0.51
CHD4-212ENST00000545083 PTPRAP18433 802 aa11.85□□□□□ -0.51
CHD4-212ENST00000545083 EXOSC9Q06265 439 aaKnown RBP11.85□□□□□ -0.51
CHD4-212ENST00000545083 TRIM32Q13049 653 aa11.85□□□□□ -0.51
CHD4-212ENST00000545083 FASTKD5Q7L8L6 764 aaKnown RBP11.85□□□□□ -0.51
CHD4-212ENST00000545083 TDHQ8IZJ6 230 aa11.85□□□□□ -0.51
CHD4-212ENST00000545083 KLHDC4Q8TBB5 520 aa11.85□□□□□ -0.51
CHD4-212ENST00000545083 BICC1Q9H694 974 aaKnown RBP11.85□□□□□ -0.51
CHD4-212ENST00000545083 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.85□□□□□ -0.51
CHD4-212ENST00000545083 AFG3L2Q9Y4W6 797 aa11.85□□□□□ -0.51
CHD4-212ENST00000545083 DOCK3Q8IZD9 2030 aa11.85□□□□□ -0.51
CHD4-212ENST00000545083 ALDH1L1O75891 902 aa11.84□□□□□ -0.51
CHD4-212ENST00000545083 FGFR2P21802 821 aa11.84□□□□□ -0.51
CHD4-212ENST00000545083 PRDX5P30044 214 aa11.84□□□□□ -0.51
CHD4-212ENST00000545083 CCDC184Q52MB2 194 aa11.84□□□□□ -0.51
CHD4-212ENST00000545083 CCDC84Q86UT8 332 aaPredicted RBP11.84□□□□□ -0.51
CHD4-212ENST00000545083 SCYL3Q8IZE3 742 aa11.84□□□□□ -0.51
CHD4-212ENST00000545083 ANKRD13CQ8N6S4 541 aa11.84□□□□□ -0.51
CHD4-212ENST00000545083 ANKRD44Q8N8A2 993 aa11.84□□□□□ -0.51
CHD4-212ENST00000545083 SPINK5Q9NQ38 1064 aaPredicted RBP11.84□□□□□ -0.51
CHD4-212ENST00000545083 SLC45A1Q9Y2W3 748 aa11.84□□□□□ -0.51
CHD4-212ENST00000545083 CACNA1FO60840 1977 aa11.84□□□□□ -0.51
CHD4-212ENST00000545083 RABL6Q3YEC7 729 aaPredicted RBP11.83□□□□□ -0.52
CHD4-212ENST00000545083 SLC4A10Q6U841 1118 aa11.83□□□□□ -0.52
CHD4-212ENST00000545083 SH3BP5LQ7L8J4 393 aa11.83□□□□□ -0.52
CHD4-212ENST00000545083 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.83□□□□□ -0.52
CHD4-212ENST00000545083 ANKLE1Q8NAG6 615 aa11.83□□□□□ -0.52
CHD4-212ENST00000545083 SMCR8Q8TEV9 937 aaPredicted RBP11.83□□□□□ -0.52
CHD4-212ENST00000545083 SRCIN1Q9C0H9 1055 aa11.83□□□□□ -0.52
CHD4-212ENST00000545083 PICK1Q9NRD5 415 aa11.83□□□□□ -0.52
CHD4-212ENST00000545083 USP40Q9NVE5 1235 aa11.83□□□□□ -0.52
CHD4-212ENST00000545083 AK9Q5TCS8 1911 aa11.82□□□□□ -0.52
CHD4-212ENST00000545083 TRIM75PA6NK02 468 aa11.82□□□□□ -0.52
CHD4-212ENST00000545083 TREML2Q5T2D2 321 aa11.82□□□□□ -0.52
CHD4-212ENST00000545083 WDR66Q8TBY9 1149 aa11.82□□□□□ -0.52
CHD4-212ENST00000545083 COA7Q96BR5 231 aa11.82□□□□□ -0.52
CHD4-212ENST00000545083 NBPF3Q9H094 633 aa11.82□□□□□ -0.52
CHD4-212ENST00000545083 GJD2Q9UKL4 321 aa11.82□□□□□ -0.52
CHD4-212ENST00000545083 UTYO14607 1347 aa11.82□□□□□ -0.52
CHD4-212ENST00000545083 PFASO15067 1338 aa11.82□□□□□ -0.52
CHD4-212ENST00000545083 KIF16BQ96L93 1317 aa11.82□□□□□ -0.52
CHD4-212ENST00000545083 LAMA2P24043 3122 aaKnown RBP11.82□□□□□ -0.52
CHD4-212ENST00000545083 RFX7Q2KHR2 1363 aa11.81□□□□□ -0.52
CHD4-212ENST00000545083 TTC28Q96AY4 2481 aa11.81□□□□□ -0.52
CHD4-212ENST00000545083 HMGCRP04035 888 aa11.81□□□□□ -0.52
CHD4-212ENST00000545083 IFIT1P09914 478 aaKnown RBP11.81□□□□□ -0.52
CHD4-212ENST00000545083 RGS3P49796 1198 aa11.81□□□□□ -0.52
CHD4-212ENST00000545083 PUM3Q15397 648 aaKnown RBP11.81□□□□□ -0.52
CHD4-212ENST00000545083 FAM110CQ1W6H9 321 aa11.81□□□□□ -0.52
CHD4-212ENST00000545083 GUCD1Q96NT3 240 aa11.81□□□□□ -0.52
CHD4-212ENST00000545083 UBE2OQ9C0C9 1292 aaKnown RBP11.81□□□□□ -0.52
CHD4-212ENST00000545083 C11orf49Q9H6J7 331 aa11.81□□□□□ -0.52
CHD4-212ENST00000545083 AGTPBP1Q9UPW5 1226 aa11.81□□□□□ -0.52
CHD4-212ENST00000545083 PTPRFP10586 1907 aa11.81□□□□□ -0.52
CHD4-212ENST00000545083 RPTORQ8N122 1335 aa11.81□□□□□ -0.52
CHD4-212ENST00000545083 DDX60LQ5H9U9 1706 aaKnown RBP11.8□□□□□ -0.52
CHD4-212ENST00000545083 DDTLA6NHG4 134 aaPredicted RBP11.8□□□□□ -0.52
CHD4-212ENST00000545083 MAP3K10Q02779 954 aa11.8□□□□□ -0.52
CHD4-212ENST00000545083 IDI2Q9BXS1 227 aa11.8□□□□□ -0.52
CHD4-212ENST00000545083 HMX1Q9NP08 348 aaPredicted RBP11.8□□□□□ -0.52
CHD4-212ENST00000545083 DDX4Q9NQI0 724 aaKnown RBP11.8□□□□□ -0.52
CHD4-212ENST00000545083 OGDHLQ9ULD0 1010 aa11.8□□□□□ -0.52
CHD4-212ENST00000545083 LRRFIP2Q9Y608 721 aaKnown RBP11.8□□□□□ -0.52
CHD4-212ENST00000545083 EYSQ5T1H1 3165 aa11.79□□□□□ -0.52
CHD4-212ENST00000545083 PHIPQ8WWQ0 1821 aa11.79□□□□□ -0.52
CHD4-212ENST00000545083 DOCK2Q92608 1830 aa11.79□□□□□ -0.52
CHD4-212ENST00000545083 POTEB2H3BUK9 544 aa11.79□□□□□ -0.52
CHD4-212ENST00000545083 ENTPD3O75355 529 aa11.79□□□□□ -0.52
CHD4-212ENST00000545083 ZEB1P37275 1124 aaPredicted RBP11.79□□□□□ -0.52
CHD4-212ENST00000545083 TRIB2Q92519 343 aa11.79□□□□□ -0.52
CHD4-212ENST00000545083 SALL2Q9Y467 1007 aaPredicted RBP11.79□□□□□ -0.52
CHD4-212ENST00000545083 CTNND1O60716 968 aaKnown RBP11.78□□□□□ -0.52
CHD4-212ENST00000545083 LDHBP07195 334 aaKnown RBP11.78□□□□□ -0.52
CHD4-212ENST00000545083 COL6A1P12109 1028 aa11.78□□□□□ -0.52
CHD4-212ENST00000545083 SLC5A1P13866 664 aa11.78□□□□□ -0.52
CHD4-212ENST00000545083 RFX5P48382 616 aaPredicted RBP11.78□□□□□ -0.52
CHD4-212ENST00000545083 MDM2Q00987 491 aaPredicted RBP11.78□□□□□ -0.52
CHD4-212ENST00000545083 MAP3K21Q5TCX8 1036 aa11.78□□□□□ -0.52
CHD4-212ENST00000545083 LPIN2Q92539 896 aa11.78□□□□□ -0.52
CHD4-212ENST00000545083 FAM161BQ96MY7 647 aa11.78□□□□□ -0.52
CHD4-212ENST00000545083 DOCK1Q14185 1865 aa11.78□□□□□ -0.52
CHD4-212ENST00000545083 COL2A1P02458 1487 aaPredicted RBP11.77□□□□□ -0.52
CHD4-212ENST00000545083 PRUNE2Q8WUY3 3088 aa11.77□□□□□ -0.53
CHD4-212ENST00000545083 FAM196BA6NMK8 535 aa11.77□□□□□ -0.53
CHD4-212ENST00000545083 EYA2O00167 538 aa11.77□□□□□ -0.53
CHD4-212ENST00000545083 PEX10O60683 326 aa11.77□□□□□ -0.53
CHD4-212ENST00000545083 LRRC26Q2I0M4 334 aa11.77□□□□□ -0.53
CHD4-212ENST00000545083 NCBP3Q53F19 620 aaKnown RBP11.77□□□□□ -0.53
CHD4-212ENST00000545083 ATG9AQ7Z3C6 839 aa11.77□□□□□ -0.53
CHD4-212ENST00000545083 WDR63Q8IWG1 891 aa11.77□□□□□ -0.53
CHD4-212ENST00000545083 ZSCAN29Q8IWY8 852 aaPredicted RBP11.77□□□□□ -0.53
CHD4-212ENST00000545083 PNMA3Q9UL41 463 aa11.77□□□□□ -0.53
CHD4-212ENST00000545083 GAKO14976 1311 aa11.77□□□□□ -0.53
CHD4-212ENST00000545083 SALL1Q9NSC2 1324 aa11.77□□□□□ -0.53
CHD4-212ENST00000545083 PLXNB2O15031 1838 aa11.76□□□□□ -0.53
CHD4-212ENST00000545083 MYH13Q9UKX3 1938 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms