RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 BSDC1Q9NW68 430 aaPredicted RBP8.78□□□□□ -1
VPS13D-211ENST00000543710 RTEL1Q9NZ71 1219 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 ADGRL3Q9HAR2 1447 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 DCDC2CA8MYV0 355 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 SETSIPP0DME0 302 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 RPL13P26373 211 aaKnown RBP8.78□□□□□ -1
VPS13D-211ENST00000543710 GNA11P29992 359 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 ACTN2P35609 894 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 APBA1Q02410 837 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 CAMK4Q16566 473 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 CYP26C1Q6V0L0 522 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 LDHAL6AQ6ZMR3 332 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 CCDC110Q8TBZ0 833 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 RRP36Q96EU6 259 aaKnown RBP8.78□□□□□ -1
VPS13D-211ENST00000543710 ORC3Q9UBD5 711 aaPredicted RBP8.78□□□□□ -1
VPS13D-211ENST00000543710 CDC42BPAQ5VT25 1732 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 ZBBXA8MT70 800 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 ACTN1P12814 892 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 KIFAP3Q92845 792 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 SECISBP2LQ93073 1101 aaKnown RBP8.78□□□□□ -1
VPS13D-211ENST00000543710 CCDC85AQ96PX6 553 aaPredicted RBP8.78□□□□□ -1
VPS13D-211ENST00000543710 MKRN1Q9UHC7 482 aaKnown RBP8.78□□□□□ -1
VPS13D-211ENST00000543710 DISP1Q96F81 1524 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 ADGRF5Q8IZF2 1346 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 CA12O43570 354 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 C8orf34Q49A92 452 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 CFAP58Q5T655 872 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 CCDC121Q6ZUS5 278 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 REM2Q8IYK8 340 aaPredicted RBP8.78□□□□□ -1
VPS13D-211ENST00000543710 MTUS1Q9ULD2 1270 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 HECW2Q9P2P5 1572 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 KBTBD13C9JR72 458 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 EIF3DO15371 548 aaKnown RBP eCLIP8.78□□□□□ -1
VPS13D-211ENST00000543710 RUFY4Q6ZNE9 571 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 TRIM47Q96LD4 638 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.78□□□□□ -1
VPS13D-211ENST00000543710 IFIT1BQ5T764 474 aaKnown RBP8.77□□□□□ -1
VPS13D-211ENST00000543710 RRAGBQ5VZM2 374 aa8.77□□□□□ -1
VPS13D-211ENST00000543710 NAA16Q6N069 864 aaPredicted RBP8.77□□□□□ -1
VPS13D-211ENST00000543710 GOPCQ9HD26 462 aa8.77□□□□□ -1
VPS13D-211ENST00000543710 BCAP29Q9UHQ4 241 aa8.77□□□□□ -1
VPS13D-211ENST00000543710 PCP11498 1178 aaKnown RBP8.77□□□□□ -1.01
VPS13D-211ENST00000543710 KCNJ6P48051 423 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 TRPC3Q13507 836 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 TDRD12Q587J7 1177 aaKnown RBP8.77□□□□□ -1.01
VPS13D-211ENST00000543710 CNNM4Q6P4Q7 775 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 AFAP1L2Q8N4X5 818 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 CLSTN2Q9H4D0 955 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 EXOC7Q9UPT5 735 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 TARBP1Q13395 1621 aaKnown RBP8.77□□□□□ -1.01
VPS13D-211ENST00000543710 CUTAO60888 179 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 ARID4AP29374 1257 aaPredicted RBP8.77□□□□□ -1.01
VPS13D-211ENST00000543710 ANO6Q4KMQ2 910 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 MAATS1Q7Z4T9 603 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 FAM193BQ96PV7 902 aaPredicted RBP8.77□□□□□ -1.01
VPS13D-211ENST00000543710 CENPHQ9H3R5 247 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 LCMT1Q9UIC8 334 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 UBA7P41226 1012 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 CTCFP49711 727 aaPredicted RBP8.77□□□□□ -1.01
VPS13D-211ENST00000543710 PPFIA1Q13136 1202 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 TXNRD1Q16881 649 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 PLCD4Q9BRC7 762 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 ANAPC4Q9UJX5 808 aa8.77□□□□□ -1.01
VPS13D-211ENST00000543710 GSTTP1A0A1W2PQM5 241 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 ARHGAP25P42331 645 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 SETBP1Q9Y6X0 1596 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 NOL3O60936 208 aaKnown RBP8.76□□□□□ -1.01
VPS13D-211ENST00000543710 TFRCP02786 760 aaKnown RBP8.76□□□□□ -1.01
VPS13D-211ENST00000543710 SDSP20132 328 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 ATP2B4P23634 1241 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 SEL1L2Q5TEA6 688 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 GALNT17Q6IS24 598 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 APOBEC3FQ8IUX4 373 aaKnown RBP8.76□□□□□ -1.01
VPS13D-211ENST00000543710 ABI1Q8IZP0 508 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 GPR161Q8N6U8 529 aaKnown RBP8.76□□□□□ -1.01
VPS13D-211ENST00000543710 CTNNBL1Q8WYA6 563 aaPredicted RBP8.76□□□□□ -1.01
VPS13D-211ENST00000543710 ALG1Q9BT22 464 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 DENND2AQ9ULE3 1009 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS13D-211ENST00000543710 PPFIA3O75145 1194 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 MYCP01106 439 aaPredicted RBP8.76□□□□□ -1.01
VPS13D-211ENST00000543710 NPR1P16066 1061 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 ATP2B1P20020 1258 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 CTNNA2P26232 953 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 RNF187Q5TA31 235 aaPredicted RBP8.76□□□□□ -1.01
VPS13D-211ENST00000543710 TAOK1Q7L7X3 1001 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 NEK11Q8NG66 645 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 TM6SF1Q9BZW5 370 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 IL1RAPL2Q9NP60 686 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 HOMER2Q9NSB8 354 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 IBTKQ9P2D0 1353 aaPredicted RBP8.76□□□□□ -1.01
VPS13D-211ENST00000543710 SPTLC2O15270 562 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 MMP10P09238 476 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 IRX4P78413 519 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 FAM160A1Q05DH4 1040 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 RILPL1Q5EBL4 403 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 NKX2-3Q8TAU0 364 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 WDR66Q8TBY9 1149 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 EXOC6BQ9Y2D4 811 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 A0A1B0GUL7 405 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms