RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 CDK15Q96Q40 435 aa6.38□□□□□ -1.39
CLIP1-217ENST00000543205 FHDC1Q9C0D6 1143 aaPredicted RBP6.38□□□□□ -1.39
CLIP1-217ENST00000543205 CWC25Q9NXE8 425 aaPredicted RBP6.38□□□□□ -1.39
CLIP1-217ENST00000543205 CD2APQ9Y5K6 639 aa6.38□□□□□ -1.39
CLIP1-217ENST00000543205 ATP9BO43861 1147 aa6.38□□□□□ -1.39
CLIP1-217ENST00000543205 NTSR2O95665 410 aa6.38□□□□□ -1.39
CLIP1-217ENST00000543205 PDE6BP35913 854 aa6.38□□□□□ -1.39
CLIP1-217ENST00000543205 SUZ12Q15022 739 aaKnown RBP6.38□□□□□ -1.39
CLIP1-217ENST00000543205 CWF19L2Q2TBE0 894 aaKnown RBP6.38□□□□□ -1.39
CLIP1-217ENST00000543205 ZKSCAN2Q63HK3 967 aa6.38□□□□□ -1.39
CLIP1-217ENST00000543205 LINS1Q8NG48 757 aa6.38□□□□□ -1.39
CLIP1-217ENST00000543205 ARHGAP45Q92619 1136 aa6.38□□□□□ -1.39
CLIP1-217ENST00000543205 IBTKQ9P2D0 1353 aaPredicted RBP6.38□□□□□ -1.39
CLIP1-217ENST00000543205 RNF123Q5XPI4 1314 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 SH3TC1Q8TE82 1336 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 TTC24A2A3L6 582 aaPredicted RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 FAM187AA6NFU0 413 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 NEURL1BA8MQ27 555 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 ESPNB1AK53 854 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 GDF9O60383 454 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 ALDH1L1O75891 902 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 ADH1CP00326 375 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 ALDH1A1P00352 501 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 IGKV5-2P06315 115 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 TGFB2P61812 414 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 INTS6LQ5JSJ4 861 aaKnown RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 BEND3Q5T5X7 828 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 CYP4X1Q8N118 509 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 MPNDQ8N594 471 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 ZBTB38Q8NAP3 1195 aaPredicted RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 PLPP7Q8NBV4 271 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 SYT17Q9BSW7 474 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 BRIP1Q9BX63 1249 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 SRCIN1Q9C0H9 1055 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 COL24A1Q17RW2 1714 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 NUP98P52948 1817 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 CACNA1FO60840 1977 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 C10orf71Q711Q0 1435 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 H0YIN7 160 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 PCCAP05165 728 aaPredicted RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 NEFLP07196 543 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 ARID4AP29374 1257 aaPredicted RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 CCT4P50991 539 aaKnown RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 HDLBPQ00341 1268 aaKnown RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 NFX1Q12986 1120 aaKnown RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 GCKRQ14397 625 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 ATF7IPQ6VMQ6 1270 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 PHTF2Q8N3S3 785 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 SNIP1Q8TAD8 396 aaKnown RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 DHX38Q92620 1227 aaKnown RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 FAM89AQ96GI7 184 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 BACH2Q9BYV9 841 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 AAASQ9NRG9 546 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 C9orf78Q9NZ63 289 aaPredicted RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 BIN2Q9UBW5 565 aaPredicted RBP6.37□□□□□ -1.39
CLIP1-217ENST00000543205 DOLKQ9UPQ8 538 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 WASF2Q9Y6W5 498 aa6.37□□□□□ -1.39
CLIP1-217ENST00000543205 A0A0G2JLW4 131 aa6.36□□□□□ -1.39
CLIP1-217ENST00000543205 USP17L5A8MUK1 530 aa6.36□□□□□ -1.39
CLIP1-217ENST00000543205 IRS4O14654 1257 aaPredicted RBP6.36□□□□□ -1.39
CLIP1-217ENST00000543205 PARNO95453 639 aaKnown RBP6.36□□□□□ -1.39
CLIP1-217ENST00000543205 MAP4K4O95819 1239 aaPredicted RBP6.36□□□□□ -1.39
CLIP1-217ENST00000543205 TRIM27P14373 513 aa6.36□□□□□ -1.39
CLIP1-217ENST00000543205 EGFLAMQ63HQ2 1017 aa6.36□□□□□ -1.39
CLIP1-217ENST00000543205 NOP9Q86U38 636 aaKnown RBP6.36□□□□□ -1.39
CLIP1-217ENST00000543205 C2CD5Q86YS7 1000 aa6.36□□□□□ -1.39
CLIP1-217ENST00000543205 FTSJ3Q8IY81 847 aaKnown RBP6.36□□□□□ -1.39
CLIP1-217ENST00000543205 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.36□□□□□ -1.39
CLIP1-217ENST00000543205 NLGN2Q8NFZ4 835 aa6.36□□□□□ -1.39
CLIP1-217ENST00000543205 PIK3R5Q8WYR1 880 aa6.36□□□□□ -1.39
CLIP1-217ENST00000543205 JARID2Q92833 1246 aaPredicted RBP6.36□□□□□ -1.39
CLIP1-217ENST00000543205 NLRP3Q96P20 1036 aa6.36□□□□□ -1.39
CLIP1-217ENST00000543205 CCDC85AQ96PX6 553 aaPredicted RBP6.36□□□□□ -1.39
CLIP1-217ENST00000543205 TMA7Q9Y2S6 64 aaKnown RBP6.36□□□□□ -1.39
CLIP1-217ENST00000543205 PCDHB11Q9Y5F2 797 aa6.36□□□□□ -1.39
CLIP1-217ENST00000543205 ARFGEF2Q9Y6D5 1785 aa6.36□□□□□ -1.39
CLIP1-217ENST00000543205 H7C1W4 665 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 PEX14O75381 377 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 HCLS1P14317 486 aaPredicted RBP6.35□□□□□ -1.39
CLIP1-217ENST00000543205 DPEP1P16444 411 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 CHRNA5P30532 468 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 GRM5P41594 1212 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 RAD51AP2Q09MP3 1159 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 NR5A1Q13285 461 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 SLC10A5Q5PT55 438 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 UBE3BQ7Z3V4 1068 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 CRIPAKQ8N1N5 446 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 SYNE4Q8N205 404 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 ZNF622Q969S3 477 aaKnown RBP eCLIP6.35□□□□□ -1.392e-7■□□□□ 8.5
CLIP1-217ENST00000543205 TANGO6Q9C0B7 1094 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 TLDC2A0PJX2 215 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 USP17L3A6NCW0 530 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 USP17L4A6NCW7 530 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 GRM8O00222 908 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 MAP7D1Q3KQU3 841 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 CCDC144BQ3MJ40 725 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 OXLD1Q5BKU9 147 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 GORABQ5T7V8 394 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 USP17L2Q6R6M4 530 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 USP17L1Q7RTZ2 530 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms