RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 HHIPL1Q96JK4 782 aa15.06■□□□□ 0
VPS33A-207ENST00000542790 PAG1Q9NWQ8 432 aa15.06■□□□□ 0
VPS33A-207ENST00000542790 ERC2O15083 957 aa15.05■□□□□ -0
VPS33A-207ENST00000542790 PLCG2P16885 1265 aa15.05■□□□□ -0
VPS33A-207ENST00000542790 MX1P20591 662 aa15.05■□□□□ -0
VPS33A-207ENST00000542790 CYP7A1P22680 504 aa15.05■□□□□ -0
VPS33A-207ENST00000542790 HUNKP57058 714 aa15.05■□□□□ -0
VPS33A-207ENST00000542790 TTLL12Q14166 644 aaPredicted RBP15.05■□□□□ -0
VPS33A-207ENST00000542790 NBPF12Q5TAG4 269 aaPredicted RBP15.05■□□□□ -0
VPS33A-207ENST00000542790 FAM151AQ8WW52 585 aa15.05■□□□□ -0
VPS33A-207ENST00000542790 KLRG1Q96E93 195 aa15.05■□□□□ -0
VPS33A-207ENST00000542790 IDI2Q9BXS1 227 aa15.05■□□□□ -0
VPS33A-207ENST00000542790 TMEM39BQ9GZU3 492 aa15.05■□□□□ -0
VPS33A-207ENST00000542790 MKRN1Q9UHC7 482 aaKnown RBP15.05■□□□□ -0
VPS33A-207ENST00000542790 CNTNAP1P78357 1384 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 PPP1R12BO60237 982 aaPredicted RBP15.04■□□□□ -0
VPS33A-207ENST00000542790 SEC24BO95487 1268 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 PPP4CP60510 307 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 NUCB1Q02818 461 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 NFIAQ12857 509 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 SLC9C2Q5TAH2 1124 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 ARMC9Q7Z3E5 817 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 CHD1LQ86WJ1 897 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 CERS3Q8IU89 383 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 MAGEB6Q8N7X4 407 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 OTUD7AQ8TE49 926 aaPredicted RBP15.04■□□□□ -0
VPS33A-207ENST00000542790 HOOK2Q96ED9 719 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 TEPSINQ96N21 525 aa15.04■□□□□ -0
VPS33A-207ENST00000542790 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.04■□□□□ -0
VPS33A-207ENST00000542790 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.03■□□□□ -0
VPS33A-207ENST00000542790 ENTPD3O75355 529 aa15.03■□□□□ -0
VPS33A-207ENST00000542790 GLRX3O76003 335 aaKnown RBP15.03■□□□□ -0
VPS33A-207ENST00000542790 ECE1P42892 770 aa15.03■□□□□ -0
VPS33A-207ENST00000542790 RHBDL3P58872 404 aa15.03■□□□□ -0
VPS33A-207ENST00000542790 TCP10Q12799 353 aa15.03■□□□□ -0
VPS33A-207ENST00000542790 TSHZ3Q63HK5 1081 aa15.03■□□□□ -0
VPS33A-207ENST00000542790 PAXIP1Q6ZW49 1069 aaPredicted RBP15.03■□□□□ -0
VPS33A-207ENST00000542790 EDC3Q96F86 508 aaKnown RBP15.03■□□□□ -0
VPS33A-207ENST00000542790 ZFP91Q96JP5 570 aaPredicted RBP15.03■□□□□ -0
VPS33A-207ENST00000542790 LNPKQ9C0E8 428 aa15.03■□□□□ -0
VPS33A-207ENST00000542790 AATFQ9NY61 560 aaKnown RBP eCLIP15.03■□□□□ -0
VPS33A-207ENST00000542790 FAM198AQ9UFP1 575 aa15.03■□□□□ -0
VPS33A-207ENST00000542790 WDHD1O75717 1129 aaPredicted RBP15.02■□□□□ -0
VPS33A-207ENST00000542790 PDE6AP16499 860 aa15.02■□□□□ -0
VPS33A-207ENST00000542790 RGS3P49796 1198 aa15.02■□□□□ -0
VPS33A-207ENST00000542790 PRKG1Q13976 671 aa15.02■□□□□ -0
VPS33A-207ENST00000542790 ZSCAN25Q6NSZ9 544 aa15.02■□□□□ -0
VPS33A-207ENST00000542790 RGMBQ6NW40 437 aa15.02■□□□□ -0
VPS33A-207ENST00000542790 ADGRA1Q86SQ6 560 aa15.02■□□□□ -0
VPS33A-207ENST00000542790 TEX11Q8IYF3 940 aa15.02■□□□□ -0
VPS33A-207ENST00000542790 PI4K2BQ8TCG2 481 aa15.02■□□□□ -0
VPS33A-207ENST00000542790 OTUD5Q96G74 571 aa15.02■□□□□ -0
VPS33A-207ENST00000542790 STAP2Q9UGK3 403 aa15.02■□□□□ -0
VPS33A-207ENST00000542790 SALL3Q9BXA9 1300 aa15.01□□□□□ -0.01
VPS33A-207ENST00000542790 UNCXA6NJT0 531 aa15.01□□□□□ -0.01
VPS33A-207ENST00000542790 UBE2Q2LH0YL09 131 aa15.01□□□□□ -0.01
VPS33A-207ENST00000542790 NEFLP07196 543 aa15.01□□□□□ -0.01
VPS33A-207ENST00000542790 IREB2P48200 963 aaKnown RBP15.01□□□□□ -0.01
VPS33A-207ENST00000542790 VEGFBP49765 207 aa15.01□□□□□ -0.01
VPS33A-207ENST00000542790 PICALMQ13492 652 aa15.01□□□□□ -0.01
VPS33A-207ENST00000542790 MAP3K11Q16584 847 aa15.01□□□□□ -0.01
VPS33A-207ENST00000542790 MOB2Q70IA6 237 aa15.01□□□□□ -0.01
VPS33A-207ENST00000542790 CDAN1Q8IWY9 1227 aa15.01□□□□□ -0.01
VPS33A-207ENST00000542790 SH3RF3Q8TEJ3 882 aaPredicted RBP15.01□□□□□ -0.01
VPS33A-207ENST00000542790 CCDC102AQ96A19 550 aa15.01□□□□□ -0.01
VPS33A-207ENST00000542790 ANGEL1Q9UNK9 670 aaKnown RBP15.01□□□□□ -0.01
VPS33A-207ENST00000542790 RPAP1Q9BWH6 1393 aaPredicted RBP15□□□□□ -0.01
VPS33A-207ENST00000542790 WDR33Q9C0J8 1336 aaKnown RBP15□□□□□ -0.01
VPS33A-207ENST00000542790 ZNF532Q9HCE3 1301 aa15□□□□□ -0.01
VPS33A-207ENST00000542790 ZNF157P51786 506 aaPredicted RBP15□□□□□ -0.01
VPS33A-207ENST00000542790 PDE1AP54750 535 aa15□□□□□ -0.01
VPS33A-207ENST00000542790 UBE3CQ15386 1083 aa15□□□□□ -0.01
VPS33A-207ENST00000542790 LRRFIP1Q32MZ4 808 aaKnown RBP15□□□□□ -0.01
VPS33A-207ENST00000542790 DCAF15Q66K64 600 aa15□□□□□ -0.01
VPS33A-207ENST00000542790 CYP4F22Q6NT55 531 aa15□□□□□ -0.01
VPS33A-207ENST00000542790 ZFPM1Q8IX07 1006 aa15□□□□□ -0.01
VPS33A-207ENST00000542790 KBTBD3Q8NAB2 608 aa15□□□□□ -0.01
VPS33A-207ENST00000542790 MIGA1Q8NAN2 632 aa15□□□□□ -0.01
VPS33A-207ENST00000542790 CAPNS2Q96L46 248 aa15□□□□□ -0.01
VPS33A-207ENST00000542790 MAGEB6P1A0A0J9YX57 407 aa14.99□□□□□ -0.01
VPS33A-207ENST00000542790 USP2O75604 605 aaPredicted RBP14.99□□□□□ -0.01
VPS33A-207ENST00000542790 ADD2P35612 726 aa14.99□□□□□ -0.01
VPS33A-207ENST00000542790 GRM1Q13255 1194 aa14.99□□□□□ -0.01
VPS33A-207ENST00000542790 LDLRAD1Q5T700 205 aa14.99□□□□□ -0.01
VPS33A-207ENST00000542790 ZSCAN29Q8IWY8 852 aaPredicted RBP14.99□□□□□ -0.01
VPS33A-207ENST00000542790 JMYQ8N9B5 988 aa14.99□□□□□ -0.01
VPS33A-207ENST00000542790 DDX4Q9NQI0 724 aaKnown RBP14.99□□□□□ -0.01
VPS33A-207ENST00000542790 RFX7Q2KHR2 1363 aa14.98□□□□□ -0.01
VPS33A-207ENST00000542790 MYH13Q9UKX3 1938 aa14.98□□□□□ -0.01
VPS33A-207ENST00000542790 TCRBV5S4A2TA0A5A2 114 aa14.98□□□□□ -0.01
VPS33A-207ENST00000542790 DYNLL1P63167 89 aaKnown RBP14.98□□□□□ -0.01
VPS33A-207ENST00000542790 ANKRD13AQ8IZ07 590 aa14.98□□□□□ -0.01
VPS33A-207ENST00000542790 TGFBRAP1Q8WUH2 860 aa14.98□□□□□ -0.01
VPS33A-207ENST00000542790 CSRNP1Q96S65 589 aa14.98□□□□□ -0.01
VPS33A-207ENST00000542790 OSBPL5Q9H0X9 879 aaPredicted RBP14.98□□□□□ -0.01
VPS33A-207ENST00000542790 FZD1Q9UP38 647 aa14.98□□□□□ -0.01
VPS33A-207ENST00000542790 ZFYP08048 801 aaPredicted RBP14.97□□□□□ -0.01
VPS33A-207ENST00000542790 MAP2K2P36507 400 aa14.97□□□□□ -0.01
VPS33A-207ENST00000542790 MKRN3Q13064 507 aaKnown RBP14.97□□□□□ -0.01
VPS33A-207ENST00000542790 NOGQ13253 232 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms