RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 CAMK4Q16566 473 aa16.98■□□□□ 0.31
CLIP1-216ENST00000541410 CTR9Q6PD62 1173 aa16.98■□□□□ 0.31
CLIP1-216ENST00000541410 PGBD1Q96JS3 809 aa16.98■□□□□ 0.31
CLIP1-216ENST00000541410 SCAND2PQ9GZW5 306 aaPredicted RBP16.98■□□□□ 0.31
CLIP1-216ENST00000541410 ZSCAN16Q9H4T2 348 aaPredicted RBP16.98■□□□□ 0.31
CLIP1-216ENST00000541410 GOLGA6L4A6NEF3 574 aa16.97■□□□□ 0.31
CLIP1-216ENST00000541410 CCDC183Q5T5S1 534 aa16.97■□□□□ 0.31
CLIP1-216ENST00000541410 USP28Q96RU2 1077 aa16.97■□□□□ 0.31
CLIP1-216ENST00000541410 FAM217BQ9NTX9 383 aaPredicted RBP16.97■□□□□ 0.31
CLIP1-216ENST00000541410 POLLQ9UGP5 575 aa16.97■□□□□ 0.31
CLIP1-216ENST00000541410 TIAM2Q8IVF5 1701 aa16.97■□□□□ 0.31
CLIP1-216ENST00000541410 C6orf229H3BNL8 230 aa16.97■□□□□ 0.31
CLIP1-216ENST00000541410 RANBP6O60518 1105 aaKnown RBP16.97■□□□□ 0.31
CLIP1-216ENST00000541410 WTAPQ15007 396 aa16.97■□□□□ 0.31
CLIP1-216ENST00000541410 TDRD7Q8NHU6 1098 aaKnown RBP16.97■□□□□ 0.31
CLIP1-216ENST00000541410 NUP133Q8WUM0 1156 aa16.97■□□□□ 0.31
CLIP1-216ENST00000541410 LDHBP07195 334 aaKnown RBP16.96■□□□□ 0.31
CLIP1-216ENST00000541410 ZNF804AQ7Z570 1209 aa16.96■□□□□ 0.31
CLIP1-216ENST00000541410 DCP1AQ9NPI6 582 aaPredicted RBP16.96■□□□□ 0.31
CLIP1-216ENST00000541410 GGA1Q9UJY5 639 aa16.96■□□□□ 0.31
CLIP1-216ENST00000541410 RIMBP2O15034 1052 aa16.96■□□□□ 0.31
CLIP1-216ENST00000541410 RXRBP28702 533 aa16.96■□□□□ 0.31
CLIP1-216ENST00000541410 SGMS1Q86VZ5 419 aa16.96■□□□□ 0.31
CLIP1-216ENST00000541410 AKT1S1Q96B36 256 aa16.96■□□□□ 0.31
CLIP1-216ENST00000541410 TSPY26PQ9H489 355 aa16.96■□□□□ 0.31
CLIP1-216ENST00000541410 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.95■□□□□ 0.3
CLIP1-216ENST00000541410 BICD2Q8TD16 824 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 UBAC1Q9BSL1 405 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 RNF41Q9H4P4 317 aaPredicted RBP16.95■□□□□ 0.3
CLIP1-216ENST00000541410 CD209Q9NNX6 404 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 ANKRD31Q8N7Z5 1873 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 ELP1O95163 1332 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 ERICH2A1L162 156 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 KIF28PB7ZC32 967 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 NMT2O60551 498 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 MMP10P09238 476 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 USP17L8P0C7I0 530 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 LIFRP42702 1097 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 FBXO18Q8NFZ0 1043 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 ALG1Q9BT22 464 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 BRIP1Q9BX63 1249 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 SLC26A6Q9BXS9 759 aa16.95■□□□□ 0.3
CLIP1-216ENST00000541410 CRNKL1Q9BZJ0 848 aaKnown RBP16.95■□□□□ 0.3
CLIP1-216ENST00000541410 BAZ2BQ9UIF8 2168 aaKnown RBP16.95■□□□□ 0.3
CLIP1-216ENST00000541410 TNKSO95271 1327 aa16.94■□□□□ 0.3
CLIP1-216ENST00000541410 SART3Q15020 963 aaKnown RBP16.94■□□□□ 0.3
CLIP1-216ENST00000541410 NTRK3Q16288 839 aa16.94■□□□□ 0.3
CLIP1-216ENST00000541410 FAM47AQ5JRC9 791 aa16.94■□□□□ 0.3
CLIP1-216ENST00000541410 TBC1D16Q8TBP0 767 aa16.94■□□□□ 0.3
CLIP1-216ENST00000541410 DACT1Q9NYF0 836 aa16.94■□□□□ 0.3
CLIP1-216ENST00000541410 PDS5AQ29RF7 1337 aaKnown RBP16.94■□□□□ 0.3
CLIP1-216ENST00000541410 ECM29Q5VYK3 1845 aa16.94■□□□□ 0.3
CLIP1-216ENST00000541410 PLSCR1O15162 318 aa16.94■□□□□ 0.3
CLIP1-216ENST00000541410 WDR66Q8TBY9 1149 aa16.94■□□□□ 0.3
CLIP1-216ENST00000541410 SH3RF3Q8TEJ3 882 aaPredicted RBP16.94■□□□□ 0.3
CLIP1-216ENST00000541410 ESR2Q92731 530 aa16.94■□□□□ 0.3
CLIP1-216ENST00000541410 MCM9Q9NXL9 1143 aa16.94■□□□□ 0.3
CLIP1-216ENST00000541410 CFAP45Q9UL16 551 aa16.94■□□□□ 0.3
CLIP1-216ENST00000541410 BBOX1O75936 387 aa16.93■□□□□ 0.3
CLIP1-216ENST00000541410 GUCY1A2P33402 732 aa16.93■□□□□ 0.3
CLIP1-216ENST00000541410 IARSP41252 1262 aaKnown RBP16.93■□□□□ 0.3
CLIP1-216ENST00000541410 SYNE3Q6ZMZ3 975 aa16.93■□□□□ 0.3
CLIP1-216ENST00000541410 CHMP4CQ96CF2 233 aa16.93■□□□□ 0.3
CLIP1-216ENST00000541410 ANAPC4Q9UJX5 808 aa16.93■□□□□ 0.3
CLIP1-216ENST00000541410 PPEF1O14829 653 aaPredicted RBP16.93■□□□□ 0.3
CLIP1-216ENST00000541410 NR1I2O75469 434 aa16.93■□□□□ 0.3
CLIP1-216ENST00000541410 ATP2B4P23634 1241 aa16.93■□□□□ 0.3
CLIP1-216ENST00000541410 SPTY2D1Q68D10 685 aaPredicted RBP16.93■□□□□ 0.3
CLIP1-216ENST00000541410 FBXW7Q969H0 707 aa16.93■□□□□ 0.3
CLIP1-216ENST00000541410 HOXA10P31260 410 aaPredicted RBP16.92■□□□□ 0.3
CLIP1-216ENST00000541410 CKAP2LQ8IYA6 745 aa16.92■□□□□ 0.3
CLIP1-216ENST00000541410 ZNF654Q8IZM8 581 aa16.92■□□□□ 0.3
CLIP1-216ENST00000541410 NLGN1Q8N2Q7 840 aa16.92■□□□□ 0.3
CLIP1-216ENST00000541410 ENAHQ8N8S7 591 aaPredicted RBP16.92■□□□□ 0.3
CLIP1-216ENST00000541410 CLIC4Q9Y696 253 aa16.92■□□□□ 0.3
CLIP1-216ENST00000541410 DUOX1Q9NRD9 1551 aa16.92■□□□□ 0.3
CLIP1-216ENST00000541410 USP5P45974 858 aa16.92■□□□□ 0.3
CLIP1-216ENST00000541410 CPLX2Q6PUV4 134 aaKnown RBP16.92■□□□□ 0.3
CLIP1-216ENST00000541410 DYNLL2Q96FJ2 89 aa16.92■□□□□ 0.3
CLIP1-216ENST00000541410 hCG_1642624A0A1W2PR95 340 aa16.91■□□□□ 0.3
CLIP1-216ENST00000541410 SEC23AQ15436 765 aa16.91■□□□□ 0.3
CLIP1-216ENST00000541410 RTN1Q16799 776 aa16.91■□□□□ 0.3
CLIP1-216ENST00000541410 KRT40Q6A162 431 aa16.91■□□□□ 0.3
CLIP1-216ENST00000541410 TGFBRAP1Q8WUH2 860 aa16.91■□□□□ 0.3
CLIP1-216ENST00000541410 CRAMP1Q96RY5 1269 aa16.91■□□□□ 0.3
CLIP1-216ENST00000541410 ZSCAN10Q96SZ4 725 aaPredicted RBP16.91■□□□□ 0.3
CLIP1-216ENST00000541410 MAST2Q6P0Q8 1798 aa16.91■□□□□ 0.3
CLIP1-216ENST00000541410 CDKL5O76039 1030 aa16.91■□□□□ 0.3
CLIP1-216ENST00000541410 SRGNP10124 158 aa16.91■□□□□ 0.3
CLIP1-216ENST00000541410 MFSD14BQ5SR56 506 aa16.91■□□□□ 0.3
CLIP1-216ENST00000541410 ZNF219Q9P2Y4 722 aaPredicted RBP16.91■□□□□ 0.3
CLIP1-216ENST00000541410 SAP30BPQ9UHR5 308 aaKnown RBP16.91■□□□□ 0.3
CLIP1-216ENST00000541410 F8W031 263 aaPredicted RBP16.9■□□□□ 0.3
CLIP1-216ENST00000541410 ME1P48163 572 aa16.9■□□□□ 0.3
CLIP1-216ENST00000541410 KIF23Q02241 960 aaPredicted RBP16.9■□□□□ 0.3
CLIP1-216ENST00000541410 SSRP1Q08945 709 aaKnown RBP16.9■□□□□ 0.3
CLIP1-216ENST00000541410 ZNF396Q96N95 335 aaPredicted RBP16.9■□□□□ 0.3
CLIP1-216ENST00000541410 KLRG2A4D1S0 409 aaPredicted RBP16.89■□□□□ 0.3
CLIP1-216ENST00000541410 GTF2IP78347 998 aa16.89■□□□□ 0.3
CLIP1-216ENST00000541410 MAPKAPK5Q8IW41 473 aa16.89■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms