RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	MRI	Q9BWK5	157 aa		11.22	□□□□□ -0.61
DDX55-208	ENST00000541259	CNOT7	Q9UIV1	285 aa	Known RBP	11.22	□□□□□ -0.61
DDX55-208	ENST00000541259	NAV1	Q8NEY1	1877 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	CCDC171	Q6TFL3	1326 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	RAD50	Q92878	1312 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	FOXP2	O15409	715 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	EPS15	P42566	896 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	MFAP1	P55081	439 aa	Known RBP	11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	ZNF280A	P59817	542 aa	Predicted RBP	11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	PPP4C	P60510	307 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	RBM26	Q5T8P6	1007 aa	Known RBP	11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	SAMD7	Q7Z3H4	446 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	SLF2	Q8IX21	1173 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	PRMT6	Q96LA8	375 aa	Predicted RBP	11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	ZDHHC15	Q96MV8	337 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	LSG1	Q9H089	658 aa	Known RBP	11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	GPRC5D	Q9NZD1	345 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	SERPINA10	Q9UK55	444 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	HDAC9	Q9UKV0	1011 aa		11.21	□□□□□ -0.61
DDX55-208	ENST00000541259	SCN4A	P35499	1836 aa		11.21	□□□□□ -0.62
DDX55-208	ENST00000541259	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	GLTPD2	A6NH11	291 aa		11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	PPP1R37	O75864	691 aa		11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	RHBDL3	P58872	404 aa		11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	DPY19L2	Q6NUT2	758 aa		11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	CDC42EP5	Q6NZY7	148 aa		11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	TMED8	Q6PL24	325 aa	Predicted RBP	11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	OGFOD1	Q8N543	542 aa		11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	ZBED3	Q96IU2	234 aa	Predicted RBP	11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	MS4A4A	Q96JQ5	239 aa		11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	MYOZ2	Q9NPC6	264 aa		11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	ANO2	Q9NQ90	1003 aa		11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	USP40	Q9NVE5	1235 aa		11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	SLC4A4	Q9Y6R1	1079 aa		11.2	□□□□□ -0.62
DDX55-208	ENST00000541259	WDR90	Q96KV7	1748 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	GSG1L2	A8MUP6	293 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259		H7C1D1	291 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	BAG3	O95817	575 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	HSPD1	P10809	573 aa	Known RBP	11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	PLCG2	P16885	1265 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	DLGAP5	Q15398	846 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	NBPF9	Q3BBW0	867 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	MTMR14	Q8NCE2	650 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	TRPM4	Q8TD43	1214 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	SDR42E1	Q8WUS8	393 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	NOL10	Q9BSC4	688 aa	Known RBP	11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	USP26	Q9BXU7	913 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	TDRD3	Q9H7E2	651 aa	Known RBP	11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	LAMA4	Q16363	1823 aa		11.19	□□□□□ -0.62
DDX55-208	ENST00000541259	ASTN2	O75129	1339 aa	Predicted RBP	11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	CLRN2	A0PK11	232 aa		11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	POTEC	B2RU33	542 aa		11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	PATL2	C9JE40	543 aa	Known RBP	11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	WNT10B	O00744	389 aa		11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	HIRA	P54198	1017 aa	Predicted RBP	11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	CACNB3	P54284	484 aa		11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	KIAA1211	Q6ZU35	1233 aa		11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	TEX11	Q8IYF3	940 aa		11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	TGFBRAP1	Q8WUH2	860 aa		11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	MAP4K1	Q92918	833 aa		11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	LAMB1	P07942	1786 aa		11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	DDX60L	Q5H9U9	1706 aa	Known RBP	11.18	□□□□□ -0.62
DDX55-208	ENST00000541259	WDHD1	O75717	1129 aa	Predicted RBP	11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	REC8	O95072	547 aa		11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	APP	P05067	770 aa		11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	NFIA	Q12857	509 aa		11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	KIF4B	Q2VIQ3	1234 aa		11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	MAPKAPK5	Q8IW41	473 aa		11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	IFNL3	Q8IZI9	196 aa		11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	DSCC1	Q9BVC3	393 aa		11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	CRNKL1	Q9BZJ0	848 aa	Known RBP	11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	OCEL1	Q9H607	264 aa		11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	DDX4	Q9NQI0	724 aa	Known RBP	11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	ZNF70	Q9UC06	446 aa	Predicted RBP	11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	SCAF8	Q9UPN6	1271 aa	Known RBP	11.17	□□□□□ -0.62
DDX55-208	ENST00000541259	SIPA1L1	O43166	1804 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	MYH8	P13535	1937 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	SMIM22	K7EJ46	135 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	FGA	P02671	866 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	GNAT2	P19087	354 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	LMOD1	P29536	600 aa	Predicted RBP	11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	USP5	P45974	858 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	MMP14	P50281	582 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	PICALM	Q13492	652 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	ZFPM1	Q8IX07	1006 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	SLC39A7	Q92504	469 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	DCP1A	Q9NPI6	582 aa	Predicted RBP	11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	FAM198A	Q9UFP1	575 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	MKRN1	Q9UHC7	482 aa	Known RBP	11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	SAP30BP	Q9UHR5	308 aa	Known RBP	11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	HACL1	Q9UJ83	578 aa		11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	RBM8A	Q9Y5S9	174 aa	Known RBP	11.16	□□□□□ -0.62
DDX55-208	ENST00000541259	CYP2D7	A0A087X1C5	515 aa		11.15	□□□□□ -0.62
DDX55-208	ENST00000541259	TCP10L2	B9ZVM9	353 aa		11.15	□□□□□ -0.62
DDX55-208	ENST00000541259	CYP2D6	P10635	497 aa		11.15	□□□□□ -0.62
DDX55-208	ENST00000541259	ALX1	Q15699	326 aa		11.15	□□□□□ -0.62
DDX55-208	ENST00000541259	SLC4A8	Q2Y0W8	1093 aa		11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms