RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 MIGA1Q8NAN2 632 aa21.02■□□□□ 0.96
CLSTN3-210ENST00000540931 NACAP1Q9BZK3 213 aa21.02■□□□□ 0.96
CLSTN3-210ENST00000540931 MYO5AQ9Y4I1 1855 aaKnown RBP21.02■□□□□ 0.96
CLSTN3-210ENST00000540931 LBX1P52954 281 aa21.01■□□□□ 0.95
CLSTN3-210ENST00000540931 RASA3Q14644 834 aa21.01■□□□□ 0.95
CLSTN3-210ENST00000540931 DEFB115Q30KQ5 88 aa21.01■□□□□ 0.95
CLSTN3-210ENST00000540931 ADGRA1Q86SQ6 560 aa21.01■□□□□ 0.95
CLSTN3-210ENST00000540931 UNCXA6NJT0 531 aa21■□□□□ 0.95
CLSTN3-210ENST00000540931 TCP10L2B9ZVM9 353 aa21■□□□□ 0.95
CLSTN3-210ENST00000540931 WDHD1O75717 1129 aaPredicted RBP21■□□□□ 0.95
CLSTN3-210ENST00000540931 MBD4O95243 580 aa21■□□□□ 0.95
CLSTN3-210ENST00000540931 DCAF15Q66K64 600 aa21■□□□□ 0.95
CLSTN3-210ENST00000540931 USP48Q86UV5 1035 aa21■□□□□ 0.95
CLSTN3-210ENST00000540931 SH3RF3Q8TEJ3 882 aaPredicted RBP21■□□□□ 0.95
CLSTN3-210ENST00000540931 PUS7LQ9H0K6 701 aaKnown RBP21■□□□□ 0.95
CLSTN3-210ENST00000540931 PCDHAC2Q9Y5I4 1007 aa21■□□□□ 0.95
CLSTN3-210ENST00000540931 PPP1R12BO60237 982 aaPredicted RBP20.99■□□□□ 0.95
CLSTN3-210ENST00000540931 HLA-DOAP06340 250 aa20.99■□□□□ 0.95
CLSTN3-210ENST00000540931 TTC6Q86TZ1 520 aa20.99■□□□□ 0.95
CLSTN3-210ENST00000540931 OSBP2Q969R2 916 aa20.99■□□□□ 0.95
CLSTN3-210ENST00000540931 STRBPQ96SI9 672 aaKnown RBP20.99■□□□□ 0.95
CLSTN3-210ENST00000540931 GPAA1O43292 621 aa20.98■□□□□ 0.95
CLSTN3-210ENST00000540931 ZSCAN29Q8IWY8 852 aaPredicted RBP20.98■□□□□ 0.95
CLSTN3-210ENST00000540931 TGFBRAP1Q8WUH2 860 aa20.98■□□□□ 0.95
CLSTN3-210ENST00000540931 GLIS2Q9BZE0 524 aaPredicted RBP20.98■□□□□ 0.95
CLSTN3-210ENST00000540931 OSBPL5Q9H0X9 879 aaPredicted RBP20.98■□□□□ 0.95
CLSTN3-210ENST00000540931 SLC4A4Q9Y6R1 1079 aa20.98■□□□□ 0.95
CLSTN3-210ENST00000540931 ATRNL1Q5VV63 1379 aa20.97■□□□□ 0.95
CLSTN3-210ENST00000540931 PATL2C9JE40 543 aaKnown RBP20.97■□□□□ 0.95
CLSTN3-210ENST00000540931 HSPA8P11142 646 aaKnown RBP20.97■□□□□ 0.95
CLSTN3-210ENST00000540931 DYNLL1P63167 89 aaKnown RBP20.97■□□□□ 0.95
CLSTN3-210ENST00000540931 ARMT1Q9H993 441 aa20.97■□□□□ 0.95
CLSTN3-210ENST00000540931 PI4KBQ9UBF8 816 aa20.97■□□□□ 0.95
CLSTN3-210ENST00000540931 FAM198AQ9UFP1 575 aa20.97■□□□□ 0.95
CLSTN3-210ENST00000540931 FLT1P17948 1338 aa20.97■□□□□ 0.95
CLSTN3-210ENST00000540931 WDR33Q9C0J8 1336 aaKnown RBP20.97■□□□□ 0.95
CLSTN3-210ENST00000540931 CDC45O75419 566 aa20.96■□□□□ 0.95
CLSTN3-210ENST00000540931 CHMLP26374 656 aa20.96■□□□□ 0.95
CLSTN3-210ENST00000540931 PICALMQ13492 652 aa20.96■□□□□ 0.95
CLSTN3-210ENST00000540931 CWC27Q6UX04 472 aaKnown RBP20.96■□□□□ 0.95
CLSTN3-210ENST00000540931 FOXP4Q8IVH2 680 aaPredicted RBP20.96■□□□□ 0.95
CLSTN3-210ENST00000540931 LCORLQ8N3X6 602 aa20.96■□□□□ 0.95
CLSTN3-210ENST00000540931 C2orf69Q8N8R5 385 aa20.96■□□□□ 0.95
CLSTN3-210ENST00000540931 CDCA5Q96FF9 252 aa20.96■□□□□ 0.95
CLSTN3-210ENST00000540931 HERC5Q9UII4 1024 aaKnown RBP20.96■□□□□ 0.95
CLSTN3-210ENST00000540931 ASTN2O75129 1339 aaPredicted RBP20.96■□□□□ 0.95
CLSTN3-210ENST00000540931 TBC1D12O60347 775 aa20.95■□□□□ 0.94
CLSTN3-210ENST00000540931 MAP2K1Q02750 393 aaPredicted RBP20.95■□□□□ 0.94
CLSTN3-210ENST00000540931 NFIAQ12857 509 aa20.95■□□□□ 0.94
CLSTN3-210ENST00000540931 NMIQ13287 307 aaPredicted RBP20.95■□□□□ 0.94
CLSTN3-210ENST00000540931 ARMC9Q7Z3E5 817 aa20.95■□□□□ 0.94
CLSTN3-210ENST00000540931 TRIM34Q9BYJ4 488 aa20.95■□□□□ 0.94
CLSTN3-210ENST00000540931 ZNF287Q9HBT7 754 aa20.95■□□□□ 0.94
CLSTN3-210ENST00000540931 ARPP21Q9UBL0 812 aaPredicted RBP20.95■□□□□ 0.94
CLSTN3-210ENST00000540931 POLR2AP24928 1970 aaKnown RBP20.95■□□□□ 0.94
CLSTN3-210ENST00000540931 CCDC171Q6TFL3 1326 aa20.95■□□□□ 0.94
CLSTN3-210ENST00000540931 ADM5C9JUS6 153 aa20.94■□□□□ 0.94
CLSTN3-210ENST00000540931 APPP05067 770 aa20.94■□□□□ 0.94
CLSTN3-210ENST00000540931 IREB2P48200 963 aaKnown RBP20.94■□□□□ 0.94
CLSTN3-210ENST00000540931 CACNB3P54284 484 aa20.94■□□□□ 0.94
CLSTN3-210ENST00000540931 TCP10Q12799 353 aa20.94■□□□□ 0.94
CLSTN3-210ENST00000540931 CSRNP1Q96S65 589 aa20.94■□□□□ 0.94
CLSTN3-210ENST00000540931 DCP1AQ9NPI6 582 aaPredicted RBP20.94■□□□□ 0.94
CLSTN3-210ENST00000540931 ABT1Q9ULW3 272 aaKnown RBP20.94■□□□□ 0.94
CLSTN3-210ENST00000540931 POLR3DP05423 398 aaPredicted RBP20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 SLC3A2P08195 630 aaKnown RBP20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 NT5C2P49902 561 aa20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 ALX1Q15699 326 aa20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 KIAA1211Q6ZU35 1233 aa20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 MAPKAPK5Q8IW41 473 aa20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 ABHD8Q96I13 439 aa20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 TEPSINQ96N21 525 aa20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 TMEM39BQ9GZU3 492 aa20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 EHD4Q9H223 541 aa20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 MCM9Q9NXL9 1143 aa20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 CTNNA3Q9UI47 895 aa20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 ZMYM6O95789 1325 aa20.93■□□□□ 0.94
CLSTN3-210ENST00000540931 FOCADQ5VW36 1801 aa20.92■□□□□ 0.94
CLSTN3-210ENST00000540931 A0A0D9SFI3 127 aa20.92■□□□□ 0.94
CLSTN3-210ENST00000540931 M0R2C6 588 aa20.92■□□□□ 0.94
CLSTN3-210ENST00000540931 CELF2O95319 508 aaKnown RBP20.92■□□□□ 0.94
CLSTN3-210ENST00000540931 SBK1Q52WX2 424 aa20.92■□□□□ 0.94
CLSTN3-210ENST00000540931 FAM227BQ96M60 508 aa20.92■□□□□ 0.94
CLSTN3-210ENST00000540931 DSCC1Q9BVC3 393 aa20.92■□□□□ 0.94
CLSTN3-210ENST00000540931 NAPBQ9H115 298 aa20.92■□□□□ 0.94
CLSTN3-210ENST00000540931 GBA2Q9HCG7 927 aaPredicted RBP20.92■□□□□ 0.94
CLSTN3-210ENST00000540931 DDX4Q9NQI0 724 aaKnown RBP20.92■□□□□ 0.94
CLSTN3-210ENST00000540931 TDO2P48775 406 aa20.91■□□□□ 0.94
CLSTN3-210ENST00000540931 MAP3K10Q02779 954 aa20.91■□□□□ 0.94
CLSTN3-210ENST00000540931 FMR1Q06787 632 aaKnown RBP eCLIP20.91■□□□□ 0.94
CLSTN3-210ENST00000540931 MAP3K11Q16584 847 aa20.91■□□□□ 0.94
CLSTN3-210ENST00000540931 CRACR2BQ8N4Y2 399 aaPredicted RBP20.91■□□□□ 0.94
CLSTN3-210ENST00000540931 HHIPL1Q96JK4 782 aa20.91■□□□□ 0.94
CLSTN3-210ENST00000540931 ZNF341Q9BYN7 854 aa20.91■□□□□ 0.94
CLSTN3-210ENST00000540931 GINM1Q9NU53 330 aa20.91■□□□□ 0.94
CLSTN3-210ENST00000540931 TRPM7Q96QT4 1865 aa20.9■□□□□ 0.94
CLSTN3-210ENST00000540931 GSG1L2A8MUP6 293 aa20.9■□□□□ 0.94
CLSTN3-210ENST00000540931 EPB41L2O43491 1005 aaKnown RBP20.9■□□□□ 0.94
CLSTN3-210ENST00000540931 IFNL3Q8IZI9 196 aa20.9■□□□□ 0.94
CLSTN3-210ENST00000540931 SDR42E1Q8WUS8 393 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms