RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, human

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-215	ENST00000540904	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
SNHG1-215	ENST00000540904	RPAP1	Q9BWH6	1393 aa	Predicted RBP	11.21	□□□□□ -0.61
SNHG1-215	ENST00000540904	IGSF3	O75054	1194 aa		11.21	□□□□□ -0.61
SNHG1-215	ENST00000540904	ENTPD3	O75355	529 aa		11.21	□□□□□ -0.61
SNHG1-215	ENST00000540904	PLCG2	P16885	1265 aa		11.21	□□□□□ -0.61
SNHG1-215	ENST00000540904	KIF23	Q02241	960 aa	Predicted RBP	11.21	□□□□□ -0.61
SNHG1-215	ENST00000540904	MIGA2	Q7L4E1	593 aa		11.21	□□□□□ -0.61
SNHG1-215	ENST00000540904	TEX11	Q8IYF3	940 aa		11.21	□□□□□ -0.61
SNHG1-215	ENST00000540904	MIGA1	Q8NAN2	632 aa		11.21	□□□□□ -0.61
SNHG1-215	ENST00000540904	AIDA	Q96BJ3	306 aa		11.21	□□□□□ -0.61
SNHG1-215	ENST00000540904	BEGAIN	Q9BUH8	593 aa		11.21	□□□□□ -0.61
SNHG1-215	ENST00000540904	WBP1L	Q9NX94	342 aa		11.21	□□□□□ -0.61
SNHG1-215	ENST00000540904	RFX7	Q2KHR2	1363 aa		11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	AKAP11	Q9UKA4	1901 aa		11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	MAP4K4	O95819	1239 aa	Predicted RBP	11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	IGHD	P01880	384 aa		11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	PPP4C	P60510	307 aa		11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	DYNLL1	P63167	89 aa	Known RBP	11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	SLC9C2	Q5TAH2	1124 aa		11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	DCAF15	Q66K64	600 aa		11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	SH3BP5L	Q7L8J4	393 aa		11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	ANKRD13A	Q8IZ07	590 aa		11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	WRNIP1	Q96S55	665 aa		11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	CSRNP1	Q96S65	589 aa		11.2	□□□□□ -0.62
SNHG1-215	ENST00000540904	MYH2	Q9UKX2	1941 aa		11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	DDTL	A6NHG4	134 aa	Predicted RBP	11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	UNCX	A6NJT0	531 aa		11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	FOXN1	O15353	648 aa		11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	PDE6A	P16499	860 aa		11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	MAP3K9	P80192	1104 aa		11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	VGLL4	Q14135	290 aa		11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	SPRYD7	Q5W111	196 aa		11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	B4GALNT3	Q6L9W6	998 aa		11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	TGFBRAP1	Q8WUH2	860 aa		11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	OSBPL5	Q9H0X9	879 aa	Predicted RBP	11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	ELP3	Q9H9T3	547 aa		11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	CSAD	Q9Y600	493 aa		11.19	□□□□□ -0.62
SNHG1-215	ENST00000540904	ZNF532	Q9HCE3	1301 aa		11.18	□□□□□ -0.62
SNHG1-215	ENST00000540904	MX1	P20591	662 aa		11.18	□□□□□ -0.62
SNHG1-215	ENST00000540904	TMED8	Q6PL24	325 aa	Predicted RBP	11.18	□□□□□ -0.62
SNHG1-215	ENST00000540904	MAPKAPK5	Q8IW41	473 aa		11.18	□□□□□ -0.62
SNHG1-215	ENST00000540904	ZKSCAN4	Q969J2	545 aa	Predicted RBP	11.18	□□□□□ -0.62
SNHG1-215	ENST00000540904	OPTN	Q96CV9	577 aa		11.18	□□□□□ -0.62
SNHG1-215	ENST00000540904	ZNF341	Q9BYN7	854 aa		11.18	□□□□□ -0.62
SNHG1-215	ENST00000540904	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
SNHG1-215	ENST00000540904	FLT1	P17948	1338 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	TTC41P	Q6P2S7	1318 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	MAGEB6P1	A0A0J9YX57	407 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	TCRBV5S4A2T	A0A5A2	114 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	ERC2	O15083	957 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	SLURP2	P0DP57	97 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	INPP5B	P32019	993 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	ADD2	P35612	726 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	USP5	P45974	858 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	SLFNL1	Q499Z3	407 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	CERS3	Q8IU89	383 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	SMC5	Q8IY18	1101 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	PI4K2B	Q8TCG2	481 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	WNK4	Q96J92	1243 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	LNPK	Q9C0E8	428 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	TSKS	Q9UJT2	592 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	THSD7B	Q9C0I4	1608 aa		11.17	□□□□□ -0.62
SNHG1-215	ENST00000540904	ATRNL1	Q5VV63	1379 aa		11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	MAST2	Q6P0Q8	1798 aa		11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	GLRX3	O76003	335 aa	Known RBP	11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	CHGB	P05060	677 aa		11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	ZBTB48	P10074	688 aa	Predicted RBP	11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	GJA5	P36382	358 aa		11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	CTCF	P49711	727 aa	Predicted RBP	11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	SLC4A8	Q2Y0W8	1093 aa		11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	OTUD5	Q96G74	571 aa		11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	SAP30BP	Q9UHR5	308 aa	Known RBP	11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	ZNF112	Q9UJU3	913 aa		11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	PALD1	Q9ULE6	856 aa		11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	SNCAIP	Q9Y6H5	919 aa		11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	PCNT	O95613	3336 aa		11.16	□□□□□ -0.62
SNHG1-215	ENST00000540904	MANSC4	A6NHS7	340 aa	Predicted RBP	11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	FAM196B	A6NMK8	535 aa		11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	CA12	O43570	354 aa		11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	LBX1	P52954	281 aa		11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	PDE1A	P54750	535 aa		11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	SREBF2	Q12772	1141 aa		11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	ZSCAN25	Q6NSZ9	544 aa		11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	CHD1L	Q86WJ1	897 aa		11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	REM2	Q8IYK8	340 aa	Predicted RBP	11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	KBTBD3	Q8NAB2	608 aa		11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	RIOK1	Q9BRS2	568 aa	Known RBP	11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	DHX36	Q9H2U1	1008 aa	Known RBP	11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	PI4KB	Q9UBF8	816 aa		11.15	□□□□□ -0.62
SNHG1-215	ENST00000540904	SALL3	Q9BXA9	1300 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	SPDYE5	A6NIY4	337 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	PHF20L1	A8MW92	1017 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	TRPA1	O75762	1119 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	MBD4	O95243	580 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	HSPA8	P11142	646 aa	Known RBP	11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	TM4SF4	P48230	202 aa		11.14	□□□□□ -0.63

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