RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 VSNL1P62760 191 aa10.76□□□□□ -0.69
CLIP1-214ENST00000540539 TMC6Q7Z403 805 aa10.76□□□□□ -0.69
CLIP1-214ENST00000540539 ABTB2Q8N961 1025 aa10.76□□□□□ -0.69
CLIP1-214ENST00000540539 PXDNQ92626 1479 aa10.76□□□□□ -0.69
CLIP1-214ENST00000540539 EIF3HO15372 352 aaKnown RBP eCLIP10.75□□□□□ -0.69
CLIP1-214ENST00000540539 GNG11P61952 73 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 PARP9Q8IXQ6 854 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 CCDC13Q8IYE1 715 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 ATL2Q8NHH9 583 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 KIFC2Q96AC6 838 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 COG3Q96JB2 828 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 SCLT1Q96NL6 688 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 NHSL1Q5SYE7 1610 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 POTEB2H3BUK9 544 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 DTNBO60941 627 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 WDHD1O75717 1129 aaPredicted RBP10.75□□□□□ -0.69
CLIP1-214ENST00000540539 SMNDC1O75940 238 aaKnown RBP eCLIP10.75□□□□□ -0.69
CLIP1-214ENST00000540539 ARHGAP25P42331 645 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 CDR1P51861 262 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 PIP4K2BP78356 416 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 HSP90AB4PQ58FF6 505 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 BZW1Q7L1Q6 419 aaKnown RBP10.75□□□□□ -0.69
CLIP1-214ENST00000540539 ARHGAP22Q7Z5H3 698 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 KIAA0825Q8IV33 1275 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 HOOK2Q96ED9 719 aa10.75□□□□□ -0.69
CLIP1-214ENST00000540539 NLRP6P59044 892 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 KRT85P78386 507 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 ACCSLQ4AC99 568 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 RRP12Q5JTH9 1297 aaKnown RBP10.74□□□□□ -0.69
CLIP1-214ENST00000540539 B4GALNT4Q76KP1 1039 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 SRGAP1Q7Z6B7 1085 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 RIN2Q8WYP3 895 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-214ENST00000540539 MMADHCQ9H3L0 296 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-214ENST00000540539 TPX2Q9ULW0 747 aaKnown RBP10.74□□□□□ -0.69
CLIP1-214ENST00000540539 ZNF202O95125 648 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 SCNN1BP51168 640 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 PLCB4Q15147 1175 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 AKNAD1Q5T1N1 836 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 LMOD2Q6P5Q4 547 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 CYB5D1Q6P9G0 228 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 OSBPL9Q96SU4 736 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 SUN2Q9UH99 717 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 SOS2Q07890 1332 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-214ENST00000540539 SBNO1A3KN83 1393 aa10.74□□□□□ -0.69
CLIP1-214ENST00000540539 PAPOLAP51003 745 aaKnown RBP10.73□□□□□ -0.69
CLIP1-214ENST00000540539 ROR2Q01974 943 aaKnown RBP10.73□□□□□ -0.69
CLIP1-214ENST00000540539 STX1AQ16623 288 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 PRPF40BQ6NWY9 871 aaKnown RBP10.73□□□□□ -0.69
CLIP1-214ENST00000540539 CCDC50Q8IVM0 306 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 FAM76AQ8TAV0 307 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 USP31Q70CQ4 1352 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 OVOS2A0A0J9YW53 1432 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 OVOS2Q6IE36 1432 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 ALS2Q96Q42 1657 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 ZC3H4Q9UPT8 1303 aaKnown RBP10.73□□□□□ -0.69
CLIP1-214ENST00000540539 A0A087WWV3 80 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 ERICH2A1L162 156 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 VPS37CA5D8V6 355 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-214ENST00000540539 CUTAO60888 179 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 SSBP05455 408 aaKnown RBP eCLIP10.73□□□□□ -0.69
CLIP1-214ENST00000540539 FAM173BQ6P4H8 233 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 IL17RAQ96F46 866 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 CCDC114Q96M63 670 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 XPO4Q9C0E2 1151 aaKnown RBP10.73□□□□□ -0.69
CLIP1-214ENST00000540539 GBP3Q9H0R5 595 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 VIPAS39Q9H9C1 493 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 PUF60Q9UHX1 559 aaKnown RBP10.73□□□□□ -0.69
CLIP1-214ENST00000540539 TRPC6Q9Y210 931 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 TNS3Q68CZ2 1445 aa10.73□□□□□ -0.69
CLIP1-214ENST00000540539 GOLGA6L4A6NEF3 574 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 ATP6V1G1O75348 118 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 CAPN15O75808 1086 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 RNF8O76064 485 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 SLC8A1P32418 973 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 GNGT1P63211 74 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 DBN1Q16643 649 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 KIF4BQ2VIQ3 1234 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 DZIP3Q86Y13 1208 aaKnown RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 ALS2CR12Q96Q35 445 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 LARP6Q9BRS8 491 aaKnown RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 CAPS2Q9BXY5 557 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 IQCGQ9H095 443 aaKnown RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 DCTPP1Q9H773 170 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 PAPOLBQ9NRJ5 636 aaKnown RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 MARF1Q9Y4F3 1742 aaKnown RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 SPATA31A3Q5VYP0 1347 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 A0A1B0GVG6 124 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 NAT1P18440 290 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 EIF2S2P20042 333 aaKnown RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 GCLCP48506 637 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 CCDC15Q0P6D6 951 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 PPFIA1Q13136 1202 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 YTHDF3Q7Z739 585 aaKnown RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 AOPEPQ8N6M6 819 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 ARL10Q8N8L6 244 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 RBM41Q96IZ5 413 aaKnown RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 FMNL2Q96PY5 1086 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 ESYT1Q9BSJ8 1104 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 ZCWPW1Q9H0M4 648 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 CORO1CQ9ULV4 474 aaPredicted RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms