RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ZNF654Q8IZM8 581 aa12.4□□□□□ -0.43
CLIP1-213ENST00000540338 AATFQ9NY61 560 aaKnown RBP eCLIP12.4□□□□□ -0.43
CLIP1-213ENST00000540338 CLIC4Q9Y696 253 aa12.4□□□□□ -0.43
CLIP1-213ENST00000540338 A0A1W2PQ27 194 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 A0A1W2PQ64 194 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 A0A1W2PQD8 194 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 TRIM75PA6NK02 468 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 BMP15O95972 392 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 PTGS1P23219 599 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 PES1O00541 588 aaKnown RBP12.39□□□□□ -0.43
CLIP1-213ENST00000540338 GSDMDP57764 484 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-213ENST00000540338 POLR3EQ9NVU0 708 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 SPATA31A5Q5VU36 1347 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 SPATA31A7Q8IWB4 1347 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 SEMA3EO15041 775 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 CCDC178Q5BJE1 867 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 SOGA3Q5TF21 947 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 BARGINQ6ZT62 677 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 FANCBQ8NB91 859 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 LINC00301Q8NCQ3 95 aa12.39□□□□□ -0.43
CLIP1-213ENST00000540338 USP17L12C9JPN9 530 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 USP17L21D6R901 530 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 SFPQP23246 707 aaKnown RBP eCLIP12.38□□□□□ -0.43
CLIP1-213ENST00000540338 ZNF75DP51815 510 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 KIF23Q02241 960 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-213ENST00000540338 CYB5R4Q7L1T6 521 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 WDR66Q8TBY9 1149 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 CUTAO60888 179 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 RPS6KA4O75676 772 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 SMARCE1Q969G3 411 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 MAP7D2Q96T17 732 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 RBM10P98175 930 aaKnown RBP12.38□□□□□ -0.43
CLIP1-213ENST00000540338 ALS2Q96Q42 1657 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 CTDNEP1O95476 244 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 CMA1P23946 247 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 KRT2P35908 639 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 FILIP1LQ4L180 1135 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 MTERF4Q7Z6M4 381 aaKnown RBP12.38□□□□□ -0.43
CLIP1-213ENST00000540338 CABP5Q9NP86 173 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 KCNJ14Q9UNX9 436 aa12.38□□□□□ -0.43
CLIP1-213ENST00000540338 V9GY48 417 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-213ENST00000540338 TNKSO95271 1327 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 RGPD5Q99666 1765 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 NTSR2O95665 410 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 TSPY3P0CV98 308 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 TSPY8P0CW00 308 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 GNAQP50148 359 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 SRP68Q9UHB9 627 aaKnown RBP12.37□□□□□ -0.43
CLIP1-213ENST00000540338 STX8Q9UNK0 236 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 CCP110O43303 1012 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 NARFQ9UHQ1 456 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 MINPP1Q9UNW1 487 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 TNS2Q63HR2 1409 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 CCDC194A0A1B0GVG4 234 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 NDUFA8P51970 172 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 SLC39A14Q15043 492 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 ZSCAN10Q96SZ4 725 aaPredicted RBP12.37□□□□□ -0.43
CLIP1-213ENST00000540338 AGXT2Q9BYV1 514 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 KIAA1468Q9P260 1216 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 KCNH3Q9ULD8 1083 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 ZNF804BA4D1E1 1349 aa12.37□□□□□ -0.43
CLIP1-213ENST00000540338 GSG1L2A8MUP6 293 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 TMC6Q7Z403 805 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 NOSTRINQ8IVI9 506 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 ERCC4Q92889 916 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-213ENST00000540338 PRIMPOLQ96LW4 560 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 NEDD4P46934 1319 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 PCP11498 1178 aaKnown RBP12.36□□□□□ -0.43
CLIP1-213ENST00000540338 PFKFB1P16118 471 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 IFNAR1P17181 557 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 COL9A3Q14050 684 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-213ENST00000540338 CCDC112Q8NEF3 446 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 AIFM3Q96NN9 605 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 INCENPQ9NQS7 918 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 MARF1Q9Y4F3 1742 aaKnown RBP12.36□□□□□ -0.43
CLIP1-213ENST00000540338 ANTXR2P58335 489 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 TSR1Q2NL82 804 aaKnown RBP12.36□□□□□ -0.43
CLIP1-213ENST00000540338 FAM182BQ5T319 152 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 STAG1Q8WVM7 1258 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 GJB4Q9NTQ9 266 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 FMNL1O95466 1100 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-213ENST00000540338 FGFR2P21802 821 aa12.36□□□□□ -0.43
CLIP1-213ENST00000540338 CMTR1Q8N1G2 835 aaKnown RBP12.36□□□□□ -0.43
CLIP1-213ENST00000540338 TDRD7Q8NHU6 1098 aaKnown RBP12.36□□□□□ -0.43
CLIP1-213ENST00000540338 BTBD18B2RXH4 712 aa12.35□□□□□ -0.43
CLIP1-213ENST00000540338 DYNLL1P63167 89 aaKnown RBP12.35□□□□□ -0.43
CLIP1-213ENST00000540338 SF3B3Q15393 1217 aaKnown RBP12.35□□□□□ -0.43
CLIP1-213ENST00000540338 TBC1D9BQ66K14 1250 aa12.35□□□□□ -0.43
CLIP1-213ENST00000540338 CELF1Q92879 486 aaKnown RBP12.35□□□□□ -0.43
CLIP1-213ENST00000540338 SCN11AQ9UI33 1791 aa12.35□□□□□ -0.43
CLIP1-213ENST00000540338 LMOD1P29536 600 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-213ENST00000540338 C16orf45Q96MC5 204 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-213ENST00000540338 SEC63Q9UGP8 760 aaKnown RBP12.35□□□□□ -0.43
CLIP1-213ENST00000540338 PLCG2P16885 1265 aa12.35□□□□□ -0.43
CLIP1-213ENST00000540338 ATP2B2Q01814 1243 aa12.35□□□□□ -0.43
CLIP1-213ENST00000540338 PTPN14Q15678 1187 aa12.35□□□□□ -0.43
CLIP1-213ENST00000540338 RBM17Q96I25 401 aaKnown RBP12.35□□□□□ -0.43
CLIP1-213ENST00000540338 LY9Q9HBG7 655 aa12.35□□□□□ -0.43
CLIP1-213ENST00000540338 ARPP21Q9UBL0 812 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms