RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 CBX8Q9HC52 389 aa6.82□□□□□ -1.32
VPS13A-213ENST00000539950 P4HBP07237 508 aaKnown RBP6.81□□□□□ -1.32
VPS13A-213ENST00000539950 BMP6P22004 513 aa6.81□□□□□ -1.32
VPS13A-213ENST00000539950 COL19A1Q14993 1142 aa6.81□□□□□ -1.32
VPS13A-213ENST00000539950 RASIP1Q5U651 963 aa6.81□□□□□ -1.32
VPS13A-213ENST00000539950 ALG1LQ6GMV1 187 aa6.81□□□□□ -1.32
VPS13A-213ENST00000539950 TP53INP2Q8IXH6 220 aa6.81□□□□□ -1.32
VPS13A-213ENST00000539950 FBXL18Q96ME1 805 aa6.81□□□□□ -1.32
VPS13A-213ENST00000539950 EMILIN2Q9BXX0 1053 aa6.81□□□□□ -1.32
VPS13A-213ENST00000539950 SRCIN1Q9C0H9 1055 aa6.81□□□□□ -1.32
VPS13A-213ENST00000539950 CACNA2D2Q9NY47 1150 aa6.81□□□□□ -1.32
VPS13A-213ENST00000539950 PAX4O43316 350 aa6.8□□□□□ -1.32
VPS13A-213ENST00000539950 LEFTY1O75610 366 aa6.8□□□□□ -1.32
VPS13A-213ENST00000539950 HNRNPUQ00839 825 aaKnown RBP eCLIP6.8□□□□□ -1.32
VPS13A-213ENST00000539950 CYP27C1Q4G0S4 372 aa6.8□□□□□ -1.32
VPS13A-213ENST00000539950 FLCNQ8NFG4 579 aa6.8□□□□□ -1.32
VPS13A-213ENST00000539950 ISL2Q96A47 359 aa6.8□□□□□ -1.32
VPS13A-213ENST00000539950 ACSBG1Q96GR2 724 aa6.8□□□□□ -1.32
VPS13A-213ENST00000539950 TRAIPQ9BWF2 469 aa6.8□□□□□ -1.32
VPS13A-213ENST00000539950 PAK6Q9NQU5 681 aaPredicted RBP6.8□□□□□ -1.32
VPS13A-213ENST00000539950 PCOLCE2Q9UKZ9 415 aa6.8□□□□□ -1.32
VPS13A-213ENST00000539950 U3KQE9 123 aa6.8□□□□□ -1.32
VPS13A-213ENST00000539950 ERVK-24P63145 666 aa6.79□□□□□ -1.32
VPS13A-213ENST00000539950 FAM181AQ8N9Y4 354 aa6.79□□□□□ -1.32
VPS13A-213ENST00000539950 DUSP23Q9BVJ7 150 aa6.79□□□□□ -1.32
VPS13A-213ENST00000539950 CEP44Q9C0F1 390 aa6.79□□□□□ -1.32
VPS13A-213ENST00000539950 PPM1HQ9ULR3 514 aa6.79□□□□□ -1.32
VPS13A-213ENST00000539950 GIPC1O14908 333 aa6.78□□□□□ -1.32
VPS13A-213ENST00000539950 ATP2B2Q01814 1243 aa6.78□□□□□ -1.32
VPS13A-213ENST00000539950 CBLL1Q75N03 491 aa6.78□□□□□ -1.32
VPS13A-213ENST00000539950 WFDC3Q8IUB2 231 aa6.78□□□□□ -1.32
VPS13A-213ENST00000539950 PLD6Q8N2A8 252 aaKnown RBP6.78□□□□□ -1.32
VPS13A-213ENST00000539950 RNF214Q8ND24 703 aa6.78□□□□□ -1.32
VPS13A-213ENST00000539950 BCL7CQ8WUZ0 217 aaPredicted RBP6.78□□□□□ -1.32
VPS13A-213ENST00000539950 C12orf49Q9H741 205 aa6.78□□□□□ -1.32
VPS13A-213ENST00000539950 SSU72Q9NP77 194 aaKnown RBP6.78□□□□□ -1.32
VPS13A-213ENST00000539950 SPG7Q9UQ90 795 aa6.78□□□□□ -1.32
VPS13A-213ENST00000539950 CSADQ9Y600 493 aa6.78□□□□□ -1.32
VPS13A-213ENST00000539950 LDHBP07195 334 aaKnown RBP6.77□□□□□ -1.33
VPS13A-213ENST00000539950 CELA3AP09093 270 aa6.77□□□□□ -1.33
VPS13A-213ENST00000539950 NTF4P34130 210 aa6.77□□□□□ -1.33
VPS13A-213ENST00000539950 PPM1JQ5JR12 505 aa6.77□□□□□ -1.33
VPS13A-213ENST00000539950 ZNF574Q6ZN55 896 aaPredicted RBP6.77□□□□□ -1.33
VPS13A-213ENST00000539950 KRTAP19-1Q8IUB9 90 aa6.77□□□□□ -1.33
VPS13A-213ENST00000539950 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.77□□□□□ -1.33
VPS13A-213ENST00000539950 FMNL2Q96PY5 1086 aa6.77□□□□□ -1.33
VPS13A-213ENST00000539950 DCDC2CA8MYV0 355 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 TRIM37O94972 964 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 USP17L7P0C7H9 530 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 LCE3BQ5TA77 95 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 LLGL2Q6P1M3 1020 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 SPRED2Q7Z698 418 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 UBE3DQ7Z6J8 389 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 C12orf40Q86WS4 652 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 ANKRD24Q8TF21 1146 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 FAM8A1Q9UBU6 413 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 SLC5A6Q9Y289 635 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 SAMM50Q9Y512 469 aa6.76□□□□□ -1.33
VPS13A-213ENST00000539950 RING1Q06587 406 aa6.75□□□□□ -1.33
VPS13A-213ENST00000539950 BNIP3Q12983 259 aa6.75□□□□□ -1.33
VPS13A-213ENST00000539950 PCNX4Q63HM2 1172 aa6.75□□□□□ -1.33
VPS13A-213ENST00000539950 TOP6BLQ8N6T0 577 aa6.75□□□□□ -1.33
VPS13A-213ENST00000539950 RNF114Q9Y508 228 aa6.75□□□□□ -1.33
VPS13A-213ENST00000539950 PTPN11Q06124 597 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-213ENST00000539950 AGBL5Q8NDL9 886 aa6.74□□□□□ -1.33
VPS13A-213ENST00000539950 NETO1Q8TDF5 533 aa6.74□□□□□ -1.33
VPS13A-213ENST00000539950 RNF19AQ9NV58 838 aa6.74□□□□□ -1.33
VPS13A-213ENST00000539950 PCDHA4Q9UN74 947 aa6.74□□□□□ -1.33
VPS13A-213ENST00000539950 CD96P40200 585 aa6.73□□□□□ -1.33
VPS13A-213ENST00000539950 OXCT1P55809 520 aa6.73□□□□□ -1.33
VPS13A-213ENST00000539950 LRRC14Q15048 493 aa6.73□□□□□ -1.33
VPS13A-213ENST00000539950 ZBTB37Q5TC79 503 aa6.73□□□□□ -1.33
VPS13A-213ENST00000539950 MISP3Q96FF7 219 aa6.73□□□□□ -1.33
VPS13A-213ENST00000539950 HEXIM2Q96MH2 286 aaKnown RBP6.73□□□□□ -1.33
VPS13A-213ENST00000539950 KRTAP9-9Q9BYP9 154 aa6.73□□□□□ -1.33
VPS13A-213ENST00000539950 KRTAP9-4Q9BYQ2 154 aa6.73□□□□□ -1.33
VPS13A-213ENST00000539950 GOLGA2P5Q9HBQ8 144 aa6.73□□□□□ -1.33
VPS13A-213ENST00000539950 CYP8B1Q9UNU6 501 aa6.73□□□□□ -1.33
VPS13A-213ENST00000539950 TTF2Q9UNY4 1162 aaKnown RBP6.73□□□□□ -1.33
VPS13A-213ENST00000539950 PLAGL2Q9UPG8 496 aa6.73□□□□□ -1.33
VPS13A-213ENST00000539950 KRTAP4-8A0A0G2JLE6 195 aa6.72□□□□□ -1.33
VPS13A-213ENST00000539950 CD8BP10966 210 aa6.72□□□□□ -1.33
VPS13A-213ENST00000539950 TXKP42681 527 aa6.72□□□□□ -1.33
VPS13A-213ENST00000539950 INPP5AQ14642 412 aa6.72□□□□□ -1.33
VPS13A-213ENST00000539950 IFI16Q16666 785 aaKnown RBP6.72□□□□□ -1.33
VPS13A-213ENST00000539950 FAM214BQ7L5A3 538 aa6.72□□□□□ -1.33
VPS13A-213ENST00000539950 STK11IPQ8N1F8 1099 aa6.72□□□□□ -1.33
VPS13A-213ENST00000539950 PICK1Q9NRD5 415 aa6.72□□□□□ -1.33
VPS13A-213ENST00000539950 PATL2C9JE40 543 aaKnown RBP6.71□□□□□ -1.34
VPS13A-213ENST00000539950 FANCGO15287 622 aa6.71□□□□□ -1.34
VPS13A-213ENST00000539950 CEACAM5P06731 702 aa6.71□□□□□ -1.34
VPS13A-213ENST00000539950 GNA15P30679 374 aa6.71□□□□□ -1.34
VPS13A-213ENST00000539950 PLCL1Q15111 1095 aa6.71□□□□□ -1.34
VPS13A-213ENST00000539950 SCARA3Q6AZY7 606 aa6.71□□□□□ -1.34
VPS13A-213ENST00000539950 LRFN4Q6PJG9 635 aa6.71□□□□□ -1.34
VPS13A-213ENST00000539950 ARHGAP27Q6ZUM4 889 aa6.71□□□□□ -1.34
VPS13A-213ENST00000539950 GAL3ST3Q96A11 431 aa6.71□□□□□ -1.34
VPS13A-213ENST00000539950 ELMO3Q96BJ8 720 aa6.71□□□□□ -1.34
VPS13A-213ENST00000539950 FRMD6Q96NE9 622 aa6.71□□□□□ -1.34
VPS13A-213ENST00000539950 MKNK2Q9HBH9 465 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms