RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 DDX60LQ5H9U9 1706 aaKnown RBP15.6■□□□□ 0.09
CLSTN3-208ENST00000538933 POTEB2H3BUK9 544 aa15.6■□□□□ 0.09
CLSTN3-208ENST00000538933 CXCL11O14625 94 aa15.6■□□□□ 0.09
CLSTN3-208ENST00000538933 NEFLP07196 543 aa15.6■□□□□ 0.09
CLSTN3-208ENST00000538933 ANKLE1Q8NAG6 615 aa15.6■□□□□ 0.09
CLSTN3-208ENST00000538933 CDH23Q9H251 3354 aa15.59■□□□□ 0.09
CLSTN3-208ENST00000538933 PHIPQ8WWQ0 1821 aa15.59■□□□□ 0.09
CLSTN3-208ENST00000538933 SYN1P17600 705 aa15.59■□□□□ 0.09
CLSTN3-208ENST00000538933 FLIIQ13045 1269 aa15.59■□□□□ 0.09
CLSTN3-208ENST00000538933 MRPL50Q8N5N7 158 aaKnown RBP15.59■□□□□ 0.09
CLSTN3-208ENST00000538933 FAM151AQ8WW52 585 aa15.59■□□□□ 0.09
CLSTN3-208ENST00000538933 GUCD1Q96NT3 240 aa15.59■□□□□ 0.09
CLSTN3-208ENST00000538933 CNNM1Q9NRU3 951 aa15.59■□□□□ 0.09
CLSTN3-208ENST00000538933 IQSEC3Q9UPP2 1182 aaPredicted RBP15.59■□□□□ 0.09
CLSTN3-208ENST00000538933 CHMP3Q9Y3E7 222 aa15.59■□□□□ 0.09
CLSTN3-208ENST00000538933 RRP1P56182 461 aaKnown RBP15.58■□□□□ 0.08
CLSTN3-208ENST00000538933 CCDC57Q2TAC2 916 aa15.58■□□□□ 0.08
CLSTN3-208ENST00000538933 ZKSCAN2Q63HK3 967 aa15.58■□□□□ 0.08
CLSTN3-208ENST00000538933 TBC1D22AQ8WUA7 517 aa15.58■□□□□ 0.08
CLSTN3-208ENST00000538933 PUS3Q9BZE2 481 aaKnown RBP15.58■□□□□ 0.08
CLSTN3-208ENST00000538933 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.58■□□□□ 0.08
CLSTN3-208ENST00000538933 TMOD2Q9NZR1 351 aa15.58■□□□□ 0.08
CLSTN3-208ENST00000538933 NOB1Q9ULX3 412 aaKnown RBP15.58■□□□□ 0.08
CLSTN3-208ENST00000538933 A0A0G2JLL6 359 aaPredicted RBP15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 TNPO2O14787 897 aaKnown RBP15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 MS4A1P11836 297 aa15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 FKBP5Q13451 457 aaPredicted RBP15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 FAM109BQ6ICB4 259 aaPredicted RBP15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 HHIPL2Q6UWX4 724 aa15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 PRRT2Q7Z6L0 340 aaPredicted RBP15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 FTSJ3Q8IY81 847 aaKnown RBP15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 NBPF3Q9H094 633 aa15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 PRDM6Q9NQX0 595 aa15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 RPTORQ8N122 1335 aa15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 COL2A1P02458 1487 aaPredicted RBP15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 PLXNB2O15031 1838 aa15.57■□□□□ 0.08
CLSTN3-208ENST00000538933 PHF20L1A8MW92 1017 aa15.56■□□□□ 0.08
CLSTN3-208ENST00000538933 CHAF1AQ13111 956 aaPredicted RBP15.56■□□□□ 0.08
CLSTN3-208ENST00000538933 BEND3Q5T5X7 828 aa15.56■□□□□ 0.08
CLSTN3-208ENST00000538933 UBE2OQ9C0C9 1292 aaKnown RBP15.56■□□□□ 0.08
CLSTN3-208ENST00000538933 SLC45A1Q9Y2W3 748 aa15.56■□□□□ 0.08
CLSTN3-208ENST00000538933 PTPRCP08575 1304 aa15.55■□□□□ 0.08
CLSTN3-208ENST00000538933 FASTKD5Q7L8L6 764 aaKnown RBP15.55■□□□□ 0.08
CLSTN3-208ENST00000538933 API5Q9BZZ5 524 aaKnown RBP15.55■□□□□ 0.08
CLSTN3-208ENST00000538933 SUGT1Q9Y2Z0 365 aa15.55■□□□□ 0.08
CLSTN3-208ENST00000538933 AFG3L2Q9Y4W6 797 aa15.55■□□□□ 0.08
CLSTN3-208ENST00000538933 ATRNL1Q5VV63 1379 aa15.54■□□□□ 0.08
CLSTN3-208ENST00000538933 NFIAQ12857 509 aa15.54■□□□□ 0.08
CLSTN3-208ENST00000538933 TAF7LQ5H9L4 462 aa15.54■□□□□ 0.08
CLSTN3-208ENST00000538933 FAM198AQ9UFP1 575 aa15.54■□□□□ 0.08
CLSTN3-208ENST00000538933 GJD2Q9UKL4 321 aa15.54■□□□□ 0.08
CLSTN3-208ENST00000538933 OGDHLQ9ULD0 1010 aa15.54■□□□□ 0.08
CLSTN3-208ENST00000538933 ZHX2Q9Y6X8 837 aa15.54■□□□□ 0.08
CLSTN3-208ENST00000538933 PFASO15067 1338 aa15.53■□□□□ 0.08
CLSTN3-208ENST00000538933 PTPRAP18433 802 aa15.53■□□□□ 0.08
CLSTN3-208ENST00000538933 TCP10Q12799 353 aa15.53■□□□□ 0.08
CLSTN3-208ENST00000538933 TRIM32Q13049 653 aa15.53■□□□□ 0.08
CLSTN3-208ENST00000538933 CDC42EP5Q6NZY7 148 aa15.53■□□□□ 0.08
CLSTN3-208ENST00000538933 ATF7IPQ6VMQ6 1270 aa15.53■□□□□ 0.08
CLSTN3-208ENST00000538933 ZFPM1Q8IX07 1006 aa15.53■□□□□ 0.08
CLSTN3-208ENST00000538933 KAZALD1Q96I82 304 aa15.53■□□□□ 0.08
CLSTN3-208ENST00000538933 C11orf49Q9H6J7 331 aa15.53■□□□□ 0.08
CLSTN3-208ENST00000538933 MYH13Q9UKX3 1938 aa15.53■□□□□ 0.08
CLSTN3-208ENST00000538933 DOCK2Q92608 1830 aa15.52■□□□□ 0.08
CLSTN3-208ENST00000538933 F6X3S4 739 aa15.52■□□□□ 0.08
CLSTN3-208ENST00000538933 GRM8O00222 908 aa15.52■□□□□ 0.08
CLSTN3-208ENST00000538933 HMGCRP04035 888 aa15.52■□□□□ 0.08
CLSTN3-208ENST00000538933 VGLL2Q8N8G2 317 aa15.52■□□□□ 0.08
CLSTN3-208ENST00000538933 ARHGAP45Q92619 1136 aa15.52■□□□□ 0.08
CLSTN3-208ENST00000538933 CLUAP1Q96AJ1 413 aa15.52■□□□□ 0.08
CLSTN3-208ENST00000538933 COA7Q96BR5 231 aa15.52■□□□□ 0.08
CLSTN3-208ENST00000538933 MAST3O60307 1309 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 MROH5Q6ZUA9 1318 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 COL6A1P12109 1028 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 MAP3K10Q02779 954 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 SLC4A10Q6U841 1118 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 GADL1Q6ZQY3 521 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 VPS37DQ86XT2 251 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 SCYL3Q8IZE3 742 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 ANKRD13CQ8N6S4 541 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 HMX1Q9NP08 348 aaPredicted RBP15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 TAOK2Q9UL54 1235 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 DAGLAQ9Y4D2 1042 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 BDP1A6H8Y1 2624 aa15.51■□□□□ 0.07
CLSTN3-208ENST00000538933 DOCK1Q14185 1865 aa15.5■□□□□ 0.07
CLSTN3-208ENST00000538933 TRIM27P14373 513 aa15.5■□□□□ 0.07
CLSTN3-208ENST00000538933 CAVIN4Q5BKX8 364 aa15.5■□□□□ 0.07
CLSTN3-208ENST00000538933 FRAT2O75474 233 aaPredicted RBP15.49■□□□□ 0.07
CLSTN3-208ENST00000538933 IRX6P78412 446 aaPredicted RBP15.49■□□□□ 0.07
CLSTN3-208ENST00000538933 PDE3AQ14432 1141 aa15.49■□□□□ 0.07
CLSTN3-208ENST00000538933 FAM110CQ1W6H9 321 aa15.49■□□□□ 0.07
CLSTN3-208ENST00000538933 LRRC24Q50LG9 513 aa15.49■□□□□ 0.07
CLSTN3-208ENST00000538933 MAP3K21Q5TCX8 1036 aa15.49■□□□□ 0.07
CLSTN3-208ENST00000538933 SMCR8Q8TEV9 937 aaPredicted RBP15.49■□□□□ 0.07
CLSTN3-208ENST00000538933 FAM161BQ96MY7 647 aa15.49■□□□□ 0.07
CLSTN3-208ENST00000538933 PDE8BO95263 885 aa15.48■□□□□ 0.07
CLSTN3-208ENST00000538933 SLURP2P0DP57 97 aa15.48■□□□□ 0.07
CLSTN3-208ENST00000538933 MDM2Q00987 491 aaPredicted RBP15.48■□□□□ 0.07
CLSTN3-208ENST00000538933 DIXDC1Q155Q3 683 aa15.48■□□□□ 0.07
CLSTN3-208ENST00000538933 LRRC26Q2I0M4 334 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms