RNA–Protein interactions for RNA: ENST00000537934.5

SEMA4D-221, Transcript of semaphorin 4D, humanhuman

TSL 2

Gene SEMA4D, Length 2,710 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-221ENST00000537934 SSH3Q8TE77 659 aa13□□□□□ -0.33
SEMA4D-221ENST00000537934 DHX58Q96C10 678 aa13□□□□□ -0.33
SEMA4D-221ENST00000537934 FANCCQ00597 558 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 HSP90AB3PQ58FF7 597 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 UBE3BQ7Z3V4 1068 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 BRF1Q92994 677 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 FBXW7Q969H0 707 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 A1CFQ9NQ94 594 aaKnown RBP12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 H3BQV1 296 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 ONECUT3O60422 494 aaPredicted RBP12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 CEBPZQ03701 1054 aaKnown RBP12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 DPCR1Q3MIW9 517 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 IFFO2Q5TF58 517 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 RHPN1Q8TCX5 695 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 ACBD3Q9H3P7 528 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 PLEKHA4Q9H4M7 779 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 FAM204AQ9H8W3 233 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 ABCB6Q9NP58 842 aa12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 RBM8AQ9Y5S9 174 aaKnown RBP12.99□□□□□ -0.33
SEMA4D-221ENST00000537934 A0A087WZG4 1122 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 POLA2Q14181 598 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 CASP8Q14790 479 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 NCAPHQ15003 741 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 EPHA10Q5JZY3 1008 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 ATL3Q6DD88 541 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 KCNV1Q6PIU1 500 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 BLOC1S2Q6QNY1 142 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 FSIP1Q8NA03 581 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 STAG1Q8WVM7 1258 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 ERCC4Q92889 916 aaPredicted RBP12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 CCDC102AQ96A19 550 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 KIAA1468Q9P260 1216 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 USP42Q9H9J4 1324 aaKnown RBP12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 C21orf2O43822 256 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 CUTAO60888 179 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 RPS6KB1P23443 525 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 CRKLP46109 303 aaKnown RBP12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 TOB2Q14106 344 aaPredicted RBP12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 TMEM139Q8IV31 216 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 DDX11Q96FC9 970 aa12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 MYH14Q7Z406 1995 aaKnown RBP12.98□□□□□ -0.33
SEMA4D-221ENST00000537934 PPP1R12AO14974 1030 aaPredicted RBP12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 CBFA2T2O43439 604 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 INTS5Q6P9B9 1019 aaKnown RBP12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 FMR1NBQ8N0W7 255 aaPredicted RBP12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 CEP112Q8N8E3 955 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 FAM212AQ96EL1 285 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 SDF4Q9BRK5 362 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 GBP3Q9H0R5 595 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 IKBKBO14920 756 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 SURF6O75683 361 aaKnown RBP12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 GLRX3O76003 335 aaKnown RBP12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 HLFQ16534 295 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 TTLL5Q6EMB2 1281 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 KIF6Q6ZMV9 814 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 MAP4K1Q92918 833 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 PNKPQ96T60 521 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 TBC1D2BQ9UPU7 963 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 SLC27A2O14975 620 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 JAK2O60674 1132 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 LIG3P49916 1009 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 STK3Q13188 491 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 AFAP1L1Q8TED9 768 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 SUGCTQ9HAC7 445 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 RAI14Q9P0K7 980 aa12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 PA2G4Q9UQ80 394 aaKnown RBP12.97□□□□□ -0.33
SEMA4D-221ENST00000537934 BTAF1O14981 1849 aa12.96□□□□□ -0.33
SEMA4D-221ENST00000537934 PHACTR2O75167 634 aa12.96□□□□□ -0.33
SEMA4D-221ENST00000537934 TUBBP07437 444 aa12.96□□□□□ -0.33
SEMA4D-221ENST00000537934 NLRP12P59046 1061 aa12.96□□□□□ -0.33
SEMA4D-221ENST00000537934 SETQ01105 290 aaPredicted RBP12.96□□□□□ -0.33
SEMA4D-221ENST00000537934 MTX1Q13505 466 aa12.96□□□□□ -0.33
SEMA4D-221ENST00000537934 LRCH2Q5VUJ6 765 aa12.96□□□□□ -0.33
SEMA4D-221ENST00000537934 VSTM4Q8IW00 320 aa12.96□□□□□ -0.33
SEMA4D-221ENST00000537934 SMARCC1Q92922 1105 aaPredicted RBP12.96□□□□□ -0.33
SEMA4D-221ENST00000537934 CCDC87Q9NVE4 849 aa12.96□□□□□ -0.33
SEMA4D-221ENST00000537934 GOLGB1Q14789 3259 aaKnown RBP12.96□□□□□ -0.33
SEMA4D-221ENST00000537934 MAP3K15Q6ZN16 1313 aa12.96□□□□□ -0.34
SEMA4D-221ENST00000537934 CASP7P55210 303 aa12.96□□□□□ -0.34
SEMA4D-221ENST00000537934 UBASH3AP57075 661 aa12.96□□□□□ -0.34
SEMA4D-221ENST00000537934 COL9A3Q14050 684 aaPredicted RBP12.96□□□□□ -0.34
SEMA4D-221ENST00000537934 WWC2Q6AWC2 1192 aa12.96□□□□□ -0.34
SEMA4D-221ENST00000537934 CCDC12Q8WUD4 166 aaPredicted RBP12.96□□□□□ -0.34
SEMA4D-221ENST00000537934 MRPS27Q92552 414 aaKnown RBP12.96□□□□□ -0.34
SEMA4D-221ENST00000537934 ZNF396Q96N95 335 aaPredicted RBP12.96□□□□□ -0.34
SEMA4D-221ENST00000537934 CWC25Q9NXE8 425 aaPredicted RBP12.96□□□□□ -0.34
SEMA4D-221ENST00000537934 WDHD1O75717 1129 aaPredicted RBP12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 IL6STP40189 918 aaPredicted RBP12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 POTEDQ86YR6 584 aa12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 ZSWIM4Q9H7M6 989 aa12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 NHSQ6T4R5 1651 aa12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 STX10O60499 249 aa12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 RNF40O75150 1001 aa12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 TOP1P11387 765 aaKnown RBP12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 GPTP24298 496 aa12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 LMOD1P29536 600 aaPredicted RBP12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 ME1P48163 572 aa12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 AARSP49588 968 aaKnown RBP eCLIP12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 TCIRG1Q13488 830 aa12.95□□□□□ -0.34
SEMA4D-221ENST00000537934 TUBB2AQ13885 445 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms