RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 IGHA2P01877 340 aa9.07□□□□□ -0.96
SYNE1-232ENST00000535081 OXCT1P55809 520 aa9.07□□□□□ -0.96
SYNE1-232ENST00000535081 AOC3Q16853 763 aa9.07□□□□□ -0.96
SYNE1-232ENST00000535081 NIF3L1Q9GZT8 377 aa9.07□□□□□ -0.96
SYNE1-232ENST00000535081 GPN3Q9UHW5 284 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-232ENST00000535081 DBX1A6NMT0 343 aa9.06□□□□□ -0.96
SYNE1-232ENST00000535081 NEFMP07197 916 aa9.06□□□□□ -0.96
SYNE1-232ENST00000535081 PPP2R3AQ06190 1150 aa9.06□□□□□ -0.96
SYNE1-232ENST00000535081 DTHD1Q6ZMT9 781 aa9.06□□□□□ -0.96
SYNE1-232ENST00000535081 PDZD3Q86UT5 571 aa9.06□□□□□ -0.96
SYNE1-232ENST00000535081 TMEM40Q8WWA1 233 aa9.06□□□□□ -0.96
SYNE1-232ENST00000535081 C1orf115Q9H7X2 142 aa9.06□□□□□ -0.96
SYNE1-232ENST00000535081 TMEM265A0A087WTH1 108 aa9.05□□□□□ -0.96
SYNE1-232ENST00000535081 ANGEL2Q5VTE6 544 aaKnown RBP9.05□□□□□ -0.96
SYNE1-232ENST00000535081 TMC1Q8TDI8 760 aa9.05□□□□□ -0.96
SYNE1-232ENST00000535081 KCNB2Q92953 911 aa9.05□□□□□ -0.96
SYNE1-232ENST00000535081 TMEM39AQ9NV64 488 aa9.05□□□□□ -0.96
SYNE1-232ENST00000535081 PLAGL2Q9UPG8 496 aa9.05□□□□□ -0.96
SYNE1-232ENST00000535081 PKN1Q16512 942 aa9.04□□□□□ -0.96
SYNE1-232ENST00000535081 TOP6BLQ8N6T0 577 aa9.04□□□□□ -0.96
SYNE1-232ENST00000535081 EPS8L3Q8TE67 593 aaKnown RBP9.04□□□□□ -0.96
SYNE1-232ENST00000535081 ISL2Q96A47 359 aa9.04□□□□□ -0.96
SYNE1-232ENST00000535081 CSRNP1Q96S65 589 aa9.04□□□□□ -0.96
SYNE1-232ENST00000535081 ITIH2P19823 946 aa9.03□□□□□ -0.96
SYNE1-232ENST00000535081 FCGRTP55899 365 aa9.03□□□□□ -0.96
SYNE1-232ENST00000535081 KSR1Q8IVT5 923 aa9.03□□□□□ -0.96
SYNE1-232ENST00000535081 SSU72Q9NP77 194 aaKnown RBP9.03□□□□□ -0.96
SYNE1-232ENST00000535081 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.02□□□□□ -0.97
SYNE1-232ENST00000535081 SULF2Q8IWU5 870 aa9.02□□□□□ -0.97
SYNE1-232ENST00000535081 ALKBH8Q96BT7 664 aaKnown RBP9.02□□□□□ -0.97
SYNE1-232ENST00000535081 KRTAP4-9Q9BYQ8 210 aa9.02□□□□□ -0.97
SYNE1-232ENST00000535081 TNKS2Q9H2K2 1166 aa9.02□□□□□ -0.97
SYNE1-232ENST00000535081 ZC3H12AQ5D1E8 599 aaKnown RBP9.01□□□□□ -0.97
SYNE1-232ENST00000535081 SLC23A3Q6PIS1 610 aa9.01□□□□□ -0.97
SYNE1-232ENST00000535081 RNF214Q8ND24 703 aa9.01□□□□□ -0.97
SYNE1-232ENST00000535081 FLAD1Q8NFF5 587 aa9.01□□□□□ -0.97
SYNE1-232ENST00000535081 STK35Q8TDR2 534 aa9.01□□□□□ -0.97
SYNE1-232ENST00000535081 DMRTB1Q96MA1 342 aa9.01□□□□□ -0.97
SYNE1-232ENST00000535081 ERVK-24P63145 666 aa9□□□□□ -0.97
SYNE1-232ENST00000535081 LCE4AQ5TA78 99 aa9□□□□□ -0.97
SYNE1-232ENST00000535081 SPOCD1Q6ZMY3 1216 aa9□□□□□ -0.97
SYNE1-232ENST00000535081 SLC38A3Q99624 504 aa9□□□□□ -0.97
SYNE1-232ENST00000535081 SNX11Q9Y5W9 270 aa9□□□□□ -0.97
SYNE1-232ENST00000535081 XRCC5P13010 732 aaKnown RBP8.99□□□□□ -0.97
SYNE1-232ENST00000535081 MAP1SQ66K74 1059 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-232ENST00000535081 HEXIM2Q96MH2 286 aaKnown RBP8.99□□□□□ -0.97
SYNE1-232ENST00000535081 NLRP2Q9NX02 1062 aa8.99□□□□□ -0.97
SYNE1-232ENST00000535081 PPP4R2Q9NY27 417 aa8.99□□□□□ -0.97
SYNE1-232ENST00000535081 ARNTP27540 789 aa8.98□□□□□ -0.97
SYNE1-232ENST00000535081 FBLN7Q53RD9 439 aa8.98□□□□□ -0.97
SYNE1-232ENST00000535081 PI16Q6UXB8 463 aa8.98□□□□□ -0.97
SYNE1-232ENST00000535081 ZSWIM9Q86XI8 627 aa8.98□□□□□ -0.97
SYNE1-232ENST00000535081 RBCK1Q9BYM8 510 aa8.98□□□□□ -0.97
SYNE1-232ENST00000535081 BCO2Q9BYV7 579 aa8.98□□□□□ -0.97
SYNE1-232ENST00000535081 PRDM7Q9NQW5 492 aa8.98□□□□□ -0.97
SYNE1-232ENST00000535081 TXNDC2Q86VQ3 553 aa8.97□□□□□ -0.97
SYNE1-232ENST00000535081 GPBAR1Q8TDU6 330 aa8.97□□□□□ -0.97
SYNE1-232ENST00000535081 ASB11Q8WXH4 323 aa8.97□□□□□ -0.97
SYNE1-232ENST00000535081 EMILIN2Q9BXX0 1053 aa8.97□□□□□ -0.97
SYNE1-232ENST00000535081 GTF2IRD1Q9UHL9 959 aa8.97□□□□□ -0.97
SYNE1-232ENST00000535081 NME2P22392 152 aa8.96□□□□□ -0.98
SYNE1-232ENST00000535081 ZNF252P-AS1Q0IIN9 211 aa8.96□□□□□ -0.98
SYNE1-232ENST00000535081 MESP2Q0VG99 397 aa8.96□□□□□ -0.98
SYNE1-232ENST00000535081 IKZF1Q13422 519 aa8.96□□□□□ -0.98
SYNE1-232ENST00000535081 FAM214BQ7L5A3 538 aa8.96□□□□□ -0.98
SYNE1-232ENST00000535081 SPACA3Q8IXA5 215 aa8.96□□□□□ -0.98
SYNE1-232ENST00000535081 ACSBG1Q96GR2 724 aa8.96□□□□□ -0.98
SYNE1-232ENST00000535081 FAM84AQ96KN4 292 aa8.96□□□□□ -0.98
SYNE1-232ENST00000535081 AKAP2Q9Y2D5 859 aa8.96□□□□□ -0.98
SYNE1-232ENST00000535081 LRRC10BA6NIK2 292 aa8.95□□□□□ -0.98
SYNE1-232ENST00000535081 IGF2BP3O00425 579 aaKnown RBP eCLIP8.95□□□□□ -0.98
SYNE1-232ENST00000535081 PRDM10Q9NQV6 1147 aa8.95□□□□□ -0.98
SYNE1-232ENST00000535081 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.95□□□□□ -0.98
SYNE1-232ENST00000535081 ZP2Q05996 745 aa8.94□□□□□ -0.98
SYNE1-232ENST00000535081 KCNMB1Q16558 191 aa8.94□□□□□ -0.98
SYNE1-232ENST00000535081 PPM1JQ5JR12 505 aa8.94□□□□□ -0.98
SYNE1-232ENST00000535081 CBX8Q9HC52 389 aa8.94□□□□□ -0.98
SYNE1-232ENST00000535081 CACNA2D2Q9NY47 1150 aa8.94□□□□□ -0.98
SYNE1-232ENST00000535081 FAM53CQ9NYF3 392 aa8.94□□□□□ -0.98
SYNE1-232ENST00000535081 NTF4P34130 210 aa8.93□□□□□ -0.98
SYNE1-232ENST00000535081 BHLHE22Q8NFJ8 381 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-232ENST00000535081 ZNF503-AS2A6NEH8 195 aa8.92□□□□□ -0.98
SYNE1-232ENST00000535081 MLANAQ16655 118 aa8.92□□□□□ -0.98
SYNE1-232ENST00000535081 NKPD1Q17RQ9 610 aa8.92□□□□□ -0.98
SYNE1-232ENST00000535081 CTNND2Q9UQB3 1225 aa8.92□□□□□ -0.98
SYNE1-232ENST00000535081 CSADQ9Y600 493 aa8.92□□□□□ -0.98
SYNE1-232ENST00000535081 PITPNM2Q9BZ72 1349 aa8.91□□□□□ -0.98
SYNE1-232ENST00000535081 CLCN7P51798 805 aa8.91□□□□□ -0.98
SYNE1-232ENST00000535081 NXPE4Q6UWF7 544 aa8.91□□□□□ -0.98
SYNE1-232ENST00000535081 MPRIPQ6WCQ1 1025 aa8.91□□□□□ -0.98
SYNE1-232ENST00000535081 TMC7Q7Z402 723 aa8.91□□□□□ -0.98
SYNE1-232ENST00000535081 UBE3DQ7Z6J8 389 aa8.91□□□□□ -0.98
SYNE1-232ENST00000535081 PICK1Q9NRD5 415 aa8.91□□□□□ -0.98
SYNE1-232ENST00000535081 GNAT3A8MTJ3 354 aa8.9□□□□□ -0.98
SYNE1-232ENST00000535081 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.9□□□□□ -0.98
SYNE1-232ENST00000535081 NECAB3Q96P71 396 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-232ENST00000535081 GTF3C3Q9Y5Q9 886 aa8.9□□□□□ -0.98
SYNE1-232ENST00000535081 DCDC2CA8MYV0 355 aa8.89□□□□□ -0.99
SYNE1-232ENST00000535081 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-232ENST00000535081 KRTAP19-4Q3LI73 84 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms