RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 ZNF862O60290 1169 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 GDF11O95390 407 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 HMGB1P09429 215 aaKnown RBP5.3□□□□□ -1.56
CSMD3-210ENST00000534172 HSP90B1P14625 803 aaKnown RBP5.3□□□□□ -1.56
CSMD3-210ENST00000534172 LIG1P18858 919 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 PDE4BQ07343 736 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 MLECQ14165 292 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 FAM177A1Q8N128 213 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-210ENST00000534172 C12orf50Q8NA57 414 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-210ENST00000534172 GRIN3AQ8TCU5 1115 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 CILPO75339 1184 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 TIAF1O95411 115 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 IGHA1P01876 353 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 GATA4P43694 442 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 GOLM1Q8NBJ4 401 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 GSX1Q9H4S2 264 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-210ENST00000534172 CAPN10Q9HC96 672 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 COPRSQ9NQ92 184 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 INPP5FQ9Y2H2 1132 aa5.3□□□□□ -1.56
CSMD3-210ENST00000534172 FANCGO15287 622 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 WISP1O95388 367 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 ADH5P11766 374 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 GLB1P16278 677 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 NOS3P29474 1203 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 IREB2P48200 963 aaKnown RBP5.29□□□□□ -1.56
CSMD3-210ENST00000534172 ZC3H12AQ5D1E8 599 aaKnown RBP5.29□□□□□ -1.56
CSMD3-210ENST00000534172 SHISA2Q6UWI4 295 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 ZNF507Q8TCN5 953 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 JARID2Q92833 1246 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-210ENST00000534172 NKD1Q969G9 470 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 GAL3ST3Q96A11 431 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 ZC3H12CQ9C0D7 883 aaKnown RBP5.29□□□□□ -1.56
CSMD3-210ENST00000534172 PIDD1Q9HB75 910 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 PICK1Q9NRD5 415 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 CRIM1Q9NZV1 1036 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 TLR6Q9Y2C9 796 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 KRBA1A5PL33 1030 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 IMPDH2P12268 514 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 GARTP22102 1010 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 ZNF165P49910 485 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 USP11P51784 963 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 NAALADL2Q58DX5 795 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 AKAP4Q5JQC9 854 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 SLC51AQ86UW1 340 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 DZIP1LQ8IYY4 767 aaKnown RBP5.29□□□□□ -1.56
CSMD3-210ENST00000534172 REXO1Q8N1G1 1221 aaKnown RBP5.29□□□□□ -1.56
CSMD3-210ENST00000534172 RASGRP4Q8TDF6 673 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 FAM46AQ96IP4 442 aaKnown RBP5.29□□□□□ -1.56
CSMD3-210ENST00000534172 SEC16BQ96JE7 1060 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 ADAMTS1Q9UHI8 967 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 ADAM30Q9UKF2 790 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 STRIP2Q9ULQ0 834 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 PCDHB5Q9Y5E4 795 aa5.29□□□□□ -1.56
CSMD3-210ENST00000534172 CTSBP07858 339 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 RAD51AP2Q09MP3 1159 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 ZNF394Q53GI3 561 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 RNF214Q8ND24 703 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 GPRASP2Q96D09 838 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 FAM221AA4D161 298 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 C1QTNF9BB2RNN3 333 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 TMPRSS2O15393 492 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 DHX15O43143 795 aaKnown RBP5.28□□□□□ -1.56
CSMD3-210ENST00000534172 EIF5BO60841 1220 aaKnown RBP5.28□□□□□ -1.56
CSMD3-210ENST00000534172 GJA8P48165 433 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 APOBRQ0VD83 1088 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 SEPT6Q14141 434 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 MAP7Q14244 749 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 FBXL19Q6PCT2 694 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-210ENST00000534172 CYFIP1Q7L576 1253 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 SLITRK4Q8IW52 837 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 GIMAP7Q8NHV1 300 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 PCOLCE2Q9UKZ9 415 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 AP4E1Q9UPM8 1137 aa5.28□□□□□ -1.56
CSMD3-210ENST00000534172 DLGAP3O95886 979 aa5.27□□□□□ -1.57
CSMD3-210ENST00000534172 F13A1P00488 732 aa5.27□□□□□ -1.57
CSMD3-210ENST00000534172 ASPAP45381 313 aa5.27□□□□□ -1.57
CSMD3-210ENST00000534172 RACK1P63244 317 aaKnown RBP5.27□□□□□ -1.57
CSMD3-210ENST00000534172 FAM160A1Q05DH4 1040 aa5.27□□□□□ -1.57
CSMD3-210ENST00000534172 LRRFIP1Q32MZ4 808 aaKnown RBP5.27□□□□□ -1.57
CSMD3-210ENST00000534172 C9orf131Q5VYM1 1079 aa5.27□□□□□ -1.57
CSMD3-210ENST00000534172 CDC37L1Q7L3B6 337 aa5.27□□□□□ -1.57
CSMD3-210ENST00000534172 DYMQ7RTS9 669 aa5.27□□□□□ -1.57
CSMD3-210ENST00000534172 PCDHGC5Q9Y5F6 944 aa5.27□□□□□ -1.57
CSMD3-210ENST00000534172 ERCC6Q03468 1493 aa5.27□□□□□ -1.57
CSMD3-210ENST00000534172 ECEL1O95672 775 aa5.26□□□□□ -1.57
CSMD3-210ENST00000534172 SF3A1Q15459 793 aaKnown RBP5.26□□□□□ -1.57
CSMD3-210ENST00000534172 RASIP1Q5U651 963 aa5.26□□□□□ -1.57
CSMD3-210ENST00000534172 CD163Q86VB7 1156 aa5.26□□□□□ -1.57
CSMD3-210ENST00000534172 PPP1R1BQ9UD71 204 aaPredicted RBP5.26□□□□□ -1.57
CSMD3-210ENST00000534172 PAK2Q13177 524 aa5.26□□□□□ -1.57
CSMD3-210ENST00000534172 WIPI1Q5MNZ9 446 aaPredicted RBP5.26□□□□□ -1.57
CSMD3-210ENST00000534172 BNC2Q6ZN30 1099 aaPredicted RBP5.26□□□□□ -1.57
CSMD3-210ENST00000534172 C2CD4AQ8NCU7 369 aaPredicted RBP5.26□□□□□ -1.57
CSMD3-210ENST00000534172 OR6P1Q8NGX9 317 aa5.26□□□□□ -1.57
CSMD3-210ENST00000534172 FBXO41Q8TF61 875 aa5.26□□□□□ -1.57
CSMD3-210ENST00000534172 UTP4Q969X6 686 aaKnown RBP5.26□□□□□ -1.57
CSMD3-210ENST00000534172 MYRFLQ96LU7 910 aa5.26□□□□□ -1.57
CSMD3-210ENST00000534172 FANCD2OSQ96PS1 177 aa5.26□□□□□ -1.57
CSMD3-210ENST00000534172 WNT10AQ9GZT5 417 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms