RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 CTSHP09668 335 aa11.91□□□□□ -0.5
CSDE1-213ENST00000530784 HNRNPUQ00839 825 aaKnown RBP eCLIP11.91□□□□□ -0.5
CSDE1-213ENST00000530784 CCDC85BQ15834 202 aaPredicted RBP11.91□□□□□ -0.5
CSDE1-213ENST00000530784 LLGL2Q6P1M3 1020 aa11.91□□□□□ -0.5
CSDE1-213ENST00000530784 PAOXQ6QHF9 649 aa11.91□□□□□ -0.5
CSDE1-213ENST00000530784 FANCD2OSQ96PS1 177 aa11.91□□□□□ -0.5
CSDE1-213ENST00000530784 BCL2L13Q9BXK5 485 aa11.91□□□□□ -0.5
CSDE1-213ENST00000530784 SEMA6CQ9H3T2 930 aa11.91□□□□□ -0.5
CSDE1-213ENST00000530784 ACSBG1Q96GR2 724 aa11.9□□□□□ -0.5
CSDE1-213ENST00000530784 MFSD14AQ96MC6 490 aa11.9□□□□□ -0.5
CSDE1-213ENST00000530784 DISC1Q9NRI5 854 aa11.9□□□□□ -0.5
CSDE1-213ENST00000530784 RNF112Q9ULX5 631 aa11.9□□□□□ -0.5
CSDE1-213ENST00000530784 TRIM26Q12899 539 aaPredicted RBP11.89□□□□□ -0.51
CSDE1-213ENST00000530784 LRRC14Q15048 493 aa11.89□□□□□ -0.51
CSDE1-213ENST00000530784 ZDHHC13Q8IUH4 622 aa11.89□□□□□ -0.51
CSDE1-213ENST00000530784 CYP8B1Q9UNU6 501 aa11.89□□□□□ -0.51
CSDE1-213ENST00000530784 SORBS3O60504 671 aa11.88□□□□□ -0.51
CSDE1-213ENST00000530784 TRIM37O94972 964 aa11.88□□□□□ -0.51
CSDE1-213ENST00000530784 MFAP1P55081 439 aaKnown RBP11.88□□□□□ -0.51
CSDE1-213ENST00000530784 ZC3H12AQ5D1E8 599 aaKnown RBP11.88□□□□□ -0.51
CSDE1-213ENST00000530784 SHISA5Q8N114 240 aa11.88□□□□□ -0.51
CSDE1-213ENST00000530784 FBXL6Q8N531 539 aa11.88□□□□□ -0.51
CSDE1-213ENST00000530784 SHKBP1Q8TBC3 707 aa11.88□□□□□ -0.51
CSDE1-213ENST00000530784 GIPC2Q8TF65 315 aa11.88□□□□□ -0.51
CSDE1-213ENST00000530784 ATXN3LQ9H3M9 355 aa11.88□□□□□ -0.51
CSDE1-213ENST00000530784 MAP7Q14244 749 aa11.87□□□□□ -0.51
CSDE1-213ENST00000530784 TTBK2Q6IQ55 1244 aa11.87□□□□□ -0.51
CSDE1-213ENST00000530784 LGR6Q9HBX8 967 aa11.87□□□□□ -0.51
CSDE1-213ENST00000530784 MRS2Q9HD23 443 aa11.87□□□□□ -0.51
CSDE1-213ENST00000530784 PRKAG2Q9UGJ0 569 aa11.87□□□□□ -0.51
CSDE1-213ENST00000530784 DAGLAQ9Y4D2 1042 aa11.87□□□□□ -0.51
CSDE1-213ENST00000530784 WDR64B1ANS9 1081 aa11.86□□□□□ -0.51
CSDE1-213ENST00000530784 DYNC1LI2O43237 492 aaPredicted RBP11.86□□□□□ -0.51
CSDE1-213ENST00000530784 TGFB1P01137 390 aa11.86□□□□□ -0.51
CSDE1-213ENST00000530784 TTLL4Q14679 1199 aa11.86□□□□□ -0.51
CSDE1-213ENST00000530784 TAF1CQ15572 869 aaPredicted RBP11.86□□□□□ -0.51
CSDE1-213ENST00000530784 PIDD1Q9HB75 910 aa11.86□□□□□ -0.51
CSDE1-213ENST00000530784 VTI1BQ9UEU0 232 aa11.86□□□□□ -0.51
CSDE1-213ENST00000530784 LOC100996750A0A140TA64 210 aa11.85□□□□□ -0.51
CSDE1-213ENST00000530784 SCO2A0A1W2PP80 73 aa11.85□□□□□ -0.51
CSDE1-213ENST00000530784 ADMP35318 185 aa11.85□□□□□ -0.51
CSDE1-213ENST00000530784 PTPN11Q06124 597 aaPredicted RBP11.85□□□□□ -0.51
CSDE1-213ENST00000530784 MAP3K11Q16584 847 aa11.85□□□□□ -0.51
CSDE1-213ENST00000530784 Q8N3U1 123 aa11.85□□□□□ -0.51
CSDE1-213ENST00000530784 KRTAP4-6Q9BYQ5 205 aa11.85□□□□□ -0.51
CSDE1-213ENST00000530784 CSADQ9Y600 493 aa11.85□□□□□ -0.51
CSDE1-213ENST00000530784 URB2Q14146 1524 aaKnown RBP11.85□□□□□ -0.51
CSDE1-213ENST00000530784 USP31Q70CQ4 1352 aa11.84□□□□□ -0.51
CSDE1-213ENST00000530784 PRR19A6NJB7 356 aa11.84□□□□□ -0.51
CSDE1-213ENST00000530784 F13BP05160 661 aa11.84□□□□□ -0.51
CSDE1-213ENST00000530784 HCLS1P14317 486 aaPredicted RBP11.84□□□□□ -0.51
CSDE1-213ENST00000530784 SEZ6L2Q6UXD5 910 aa11.84□□□□□ -0.51
CSDE1-213ENST00000530784 TBC1D32Q96NH3 1257 aa11.84□□□□□ -0.51
CSDE1-213ENST00000530784 PCDHA4Q9UN74 947 aa11.84□□□□□ -0.51
CSDE1-213ENST00000530784 DCDC2CA8MYV0 355 aa11.83□□□□□ -0.52
CSDE1-213ENST00000530784 ST13P50502 369 aaKnown RBP11.83□□□□□ -0.52
CSDE1-213ENST00000530784 ERVK-24P63145 666 aa11.83□□□□□ -0.52
CSDE1-213ENST00000530784 ZNF326Q5BKZ1 582 aaKnown RBP11.83□□□□□ -0.52
CSDE1-213ENST00000530784 SCARA3Q6AZY7 606 aa11.83□□□□□ -0.52
CSDE1-213ENST00000530784 CRELD1Q96HD1 420 aa11.83□□□□□ -0.52
CSDE1-213ENST00000530784 RNGTTO60942 597 aaKnown RBP11.82□□□□□ -0.52
CSDE1-213ENST00000530784 NEFMP07197 916 aa11.82□□□□□ -0.52
CSDE1-213ENST00000530784 ZAR1Q86SH2 424 aa11.82□□□□□ -0.52
CSDE1-213ENST00000530784 SMYD4Q8IYR2 804 aaPredicted RBP11.82□□□□□ -0.52
CSDE1-213ENST00000530784 GATA6Q92908 595 aa11.82□□□□□ -0.52
CSDE1-213ENST00000530784 C1GALT1Q9NS00 363 aa11.82□□□□□ -0.52
CSDE1-213ENST00000530784 LIG3P49916 1009 aa11.81□□□□□ -0.52
CSDE1-213ENST00000530784 ARTNQ5T4W7 220 aa11.81□□□□□ -0.52
CSDE1-213ENST00000530784 C12orf40Q86WS4 652 aa11.81□□□□□ -0.52
CSDE1-213ENST00000530784 GAL3ST3Q96A11 431 aa11.81□□□□□ -0.52
CSDE1-213ENST00000530784 ATG3Q9NT62 314 aa11.81□□□□□ -0.52
CSDE1-213ENST00000530784 PCDHB5Q9Y5E4 795 aa11.81□□□□□ -0.52
CSDE1-213ENST00000530784 SSTR4P31391 388 aa11.8□□□□□ -0.52
CSDE1-213ENST00000530784 RPS26P62854 115 aaKnown RBP11.8□□□□□ -0.52
CSDE1-213ENST00000530784 LRP8Q14114 963 aa11.8□□□□□ -0.52
CSDE1-213ENST00000530784 PPM1JQ5JR12 505 aa11.8□□□□□ -0.52
CSDE1-213ENST00000530784 RNF214Q8ND24 703 aa11.8□□□□□ -0.52
CSDE1-213ENST00000530784 NOC4LQ9BVI4 516 aaKnown RBP11.8□□□□□ -0.52
CSDE1-213ENST00000530784 FAM170BA6NMN3 283 aa11.79□□□□□ -0.52
CSDE1-213ENST00000530784 HYAL3O43820 417 aaPredicted RBP11.79□□□□□ -0.52
CSDE1-213ENST00000530784 MED26O95402 600 aa11.79□□□□□ -0.52
CSDE1-213ENST00000530784 INPP5AQ14642 412 aa11.79□□□□□ -0.52
CSDE1-213ENST00000530784 AGMOQ6ZNB7 445 aa11.79□□□□□ -0.52
CSDE1-213ENST00000530784 GIMAP7Q8NHV1 300 aa11.79□□□□□ -0.52
CSDE1-213ENST00000530784 ISL2Q96A47 359 aa11.79□□□□□ -0.52
CSDE1-213ENST00000530784 PRDM2Q13029 1718 aa11.79□□□□□ -0.52
CSDE1-213ENST00000530784 CCDC88BA6NC98 1476 aa11.78□□□□□ -0.52
CSDE1-213ENST00000530784 RING1Q06587 406 aa11.78□□□□□ -0.52
CSDE1-213ENST00000530784 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.78□□□□□ -0.52
CSDE1-213ENST00000530784 OSBPL1AQ9BXW6 950 aa11.78□□□□□ -0.52
CSDE1-213ENST00000530784 COBLO75128 1261 aa11.77□□□□□ -0.53
CSDE1-213ENST00000530784 ZNF16P17020 682 aaPredicted RBP11.77□□□□□ -0.53
CSDE1-213ENST00000530784 SEPT6Q14141 434 aa11.77□□□□□ -0.53
CSDE1-213ENST00000530784 LRFN4Q6PJG9 635 aa11.77□□□□□ -0.53
CSDE1-213ENST00000530784 ELMO3Q96BJ8 720 aa11.77□□□□□ -0.53
CSDE1-213ENST00000530784 SSU72Q9NP77 194 aaKnown RBP11.77□□□□□ -0.53
CSDE1-213ENST00000530784 ZFP64Q9NPA5 681 aa11.77□□□□□ -0.53
CSDE1-213ENST00000530784 PCOLCE2Q9UKZ9 415 aa11.77□□□□□ -0.53
CSDE1-213ENST00000530784 TLR6Q9Y2C9 796 aa11.77□□□□□ -0.53
CSDE1-213ENST00000530784 TFE3P19532 575 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms